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FIGURE 7 in The Agauopsis brevipalpus group (Acari: Halacaridae), descriptions of tropical Indo-West Pacific species, a key to all species, their geographical distribution and reflections on dispersal routes
FIGURE 7: Geographical distribution of named and unnamed species of the Agauopsis brevipalpus group. Different symbols are used depending on number of spines on telofemur I. Species with one or two spines are marked by a diamond: (1, collaris; 2, rosea; X, Agauopsis sp.); with three spines by a circle: (1, filirostris; 2, glabra; 3, ivanomorselii; 4, luxtoni; 5, newelli; 6, novaezelandiae; 7, reticulata); with four spines by a quadrat (1, arabia; 2, arborea; 3, atacamae; 4, borealis; 5, brevipalpus; 6, dissimilis; 7, ibssi; 8, legionium; 9, littoralis;10, longirostris; 11, moorea; 12, obtusa; 13, ripa; 14, sordida; 15, youngilensis; X, Agauopsis sp.); with five or more spines by a triangle (1, tricuspis; X, Agauopsis sp.).
FIGURE 2 in The Agauopsis brevipalpus group (Acari: Halacaridae), descriptions of tropical Indo-West Pacific species, a key to all species, their geographical distribution and reflections on dispersal routes
FIGURE 2: Agauopsis dissimilis n.sp.: A – median part of PD level with ds-5, female; B – idiosoma, dorsal, female; C – idiosoma, ventral, female; D – gnathosoma, ventral, female; E – lateral margin of OC, female; F – gnathosomal base, dorsal, female; G – palp, lateral, female; H – AD, OC and PD, dorsal, male; I – idiosoma, ventral, male; J – genitoanal plate, male. (ds-5, fifth dorsal seta; glp, gland pore; L-Ba, length of gnathosomal base; L-Ro, length of rostrum; pa, porose areola; pc, pore canaliculus) Scale line = 50 µm
FIGURE 5 in The Agauopsis brevipalpus group (Acari: Halacaridae), descriptions of tropical Indo-West Pacific species, a key to all species, their geographical distribution and reflections on dispersal routes
FIGURE 5: Agauopsis ripa Otto, 1999, male: A – lateral margin of OC; B – genitoanal plate; C – gnathosoma, ventral; D – P-3 and P-4; E – tip of tarsus I, ventromedial; F – tip of tarsus II, ventromedial (one of lateral parambulacral setae obscured, the other in broken line); G – tip of tarsus III, ventral. (T, tectum) Scale line = 50 µm.
FIGURE 6 in The Agauopsis brevipalpus group (Acari: Halacaridae), descriptions of tropical Indo-West Pacific species, a key to all species, their geographical distribution and reflections on dispersal routes
FIGURE 6: Agauopsis sordida Bartsch, 1992: A – idiosoma, dorsal, female; B – idiosoma, ventral, female; C – lateral margin of OC, female; D – genitoanal plate, male; E – idiosoma, dorsal, male; F – idiosoma, ventral, male; G – gnathosoma, ventral, female. (pa, porose areola; spp, spermatopositor) Scale line = 50 µm.
FIGURE 1 in The Agauopsis brevipalpus group (Acari: Halacaridae), descriptions of tropical Indo-West Pacific species, a key to all species, their geographical distribution and reflections on dispersal routes
FIGURE 1: Agauopsis arabia Bartsch and Chatterjee, 2001: A – idiosoma, dorsal, female; B – lateral margin of OC, male; C – gnathosomal base, dorsal, female; D – gnathosoma, lateral, female; E – tip of tarsus IV, ventral, female. (glp, gland pore; pa, porose areola; pc, pore canaliculus; T, tectum) Scale line = 50 µm.
FIGURE 4 in The Agauopsis brevipalpus group (Acari: Halacaridae), descriptions of tropical Indo-West Pacific species, a key to all species, their geographical distribution and reflections on dispersal routes
FIGURE 4: Agauopsis moorea Bartsch, 1992: A – idiosoma, dorsal, male; B – idiosoma, ventral, male; C – lateral margin of OC, female; D – genitoanal plate, male; E – gnathosomal base, dorsal, female; F – gnathosoma, ventral, female; G – tip of tarsus II, ventromedial, male (lateral fossary seta and claw omitted). (spp, spermatopositor) Scale line = 50 µm.
FIGURE 3 in The Agauopsis brevipalpus group (Acari: Halacaridae), descriptions of tropical Indo-West Pacific species, a key to all species, their geographical distribution and reflections on dispersal routes
FIGURE 3: Agauopsis dissimilis n.sp.: A – leg I, medial, female; B – leg III, medial, female; C – leg IV, medial, female; D – malformed leg IV, medial, female; E – basifemur to tarsus II, medial, male; F – tip of tarsus I, lateral, female (medial setae and claw omitted); G – apical tibia and tarsus II, medial, male; H – tip of tarsus II, lateral, male (medial fossary seta and claw omitted); I – tip of tarsus II, medial, male (lateral fossary seta and claw omitted). (fa, membrane with famulus; so, solenidion) Scale line = 50 µm
FIGURE 2 in Arhodeoporus, Camactognathus, Plegadognathus, and Winlundia (Acari: Halacaridae), re-evaluation and geographical distribution
FIGURE 2: Phylogenetic tree of Arhodeoporus s.l., Camactognathus and Winlundia and a new classification, prepared on the basis of characters mentioned in Table 1, with Copidognathus as outgroup. (A. eclogarius and A. thyreophorus omitted)
FIGURE 4 in Arhodeoporus, Camactognathus, Plegadognathus, and Winlundia (Acari: Halacaridae), re-evaluation and geographical distribution
FIGURE 4: Geographical distribution of the genera Arhodeoporus s.str., Camactognathus, Plegadognathus, Winlundia, and Maracarus n. gen., the latter with the natural groups eclogarius (diamond), gracilipes (circle), longirostris (quadrat) and five species not belonging to any of these groups (triangle); Arhodeoporus: 1, arenarius; 2, submarinus. Camactognathus: 1, borealis; 2, grossipes; 3, tesselatus. Plegadognathus: 1, bonairensis; 2, bucculentus; 3, disparilis; 4, labronicus; 5, robustus; 6, thyreophorus; 7, wadjemupis, x, spec. Maracarus eclogarius group (diamond): 1, eclogarius; 2, leptopus; 3, longicrus; 4, mammillifer; 5, mirabilis; 6, mooreus; x - spec. M. gracilipes group (circle): 1, gracilipes; 2, minor; 3, perlucidus; 4, subtilis; x, spec. M. longirostris group (quadrat): 1, caudatus; 2, clypeatus; 3, corallicolus; 4, lizardensis; 5, longirostris; 6, mactanus; 7, psammophilus; 8, tanzanicus. Maracarus, others (triangle): 1, brevocularis; 2, kunzi; 3, lineatus; 4, minusculus; 5, nanus.
FIGURE 1 in Arhodeoporus, Camactognathus, Plegadognathus, and Winlundia (Acari: Halacaridae), re-evaluation and geographical distribution
FIGURE 1: A-E: Winlundia filistoma Newell, 1984, male: A – tarsus II, medial (lateral setae in broken line, lateral claw omitted); B – OC; C – PD (of a slightly compressed male); D – AE (areolae with ostia illustrated on one side only); E – GO. F-I: Winlundia forcipata Newell, 1984, male: F – part of left AE with epimeral pore; G – leg I, lateral; H – tarsus I, lateral; I – tarsus II, medial. (ep, epimeral pore; gac, genital acetabula; glp, gland pore; l-pas, lateral parambulacral seta; m-pas, medial parambulacral seta; os, ostia of rosette pores; so, solenidion) Scale = 50 µm A-E, Chile, Arica, 20 June 1966, stones and worm tubes, intertidal; F-I, Peru, Lima, La Herradura, 16 June 1966, coarse sand pockets between boulders.
FIGURE 3 in Arhodeoporus, Camactognathus, Plegadognathus, and Winlundia (Acari: Halacaridae), re-evaluation and geographical distribution
FIGURE 3: A – Maracarus eclogarius (AndrØ, 1959), female: tarsus IV, lateral (medial pas obscured, medial claw omitted); B – Maracarus kunzi (Bartsch, 1987), female: tarsus II, medial. C-E: Maracarus brevocularis (Bartsch, 1973), male: C – tarsus III, ventral (dorsal setae in broken line); D – GO and perigenital setae; E – tibia and tarsus IV, ventromedial. F – Plegadognathus bonairensis (Viets, 1936), female: GO and perigenital setae. G-J: Maracarus corallicolus (Otto, 2000): G – right part of AD with gland pore, male; H – genital plate with two pairs of pgs, sgs and internal acetabula, deutonymph; I – right OC, male; J – gnathosoma with suctoria, lateral aspect, male. (ca, canal of gland pore; epg, external porus of gland; gac, genital acetabula; hy, hyaline area; le, lens; l-pas, lateral parambulacral seta; m-pas, medial parambulacral seta; pa, porose areola; p-pgs, pori from perigenital setae; pgs, perigenital setae; sgs, subgenital setae) Scale = 50 µm. A, Gulf of Suez, 30 Dec. 1928, on sponges; B, South Africa, East London, broken shells; C-E, North Atlantic, Josephine Bank, 1 July 1967, 206 m, sediment; F, Indian Ocean, Australia, Dampier, Watering Cove, 8 Aug. 2000, algal turf on pneumatophores; G-J. Southwestern Pacific, Australia, Great Barrier Reef, Lizard Island, 13 Oct. 1998.
Liolophura species discrimination with geographical distribution patterns and their divergence and expansion history on the northwestern Pacific coast
<p>Please refer to Choi et al. (2021): "Choi, E.H., Yeo, M.Y., Kim, G. <i>et al.</i> <i>Liolophura</i> species discrimination with geographical distribution patterns and their divergence and expansion history on the northwestern Pacific coast. <i>Sci Rep</i> <b>11, </b>17602 (2021).</p> <p>The chiton <em>Liolophura japonica</em> (Lischke, 1873) is widely distributed in intertidal coastal areas of the northwestern Pacific. Here we show species discrimination of <em>L. japonica</em> into two species and one subspecies based on <em>COI</em> and <em>16S rRNA</em>;<em> L. koreana</em>, sp. nov. was mainly distributed at ca. 33°24'–38°32' N, <em>L. japonica</em> at ca. 33°24'–35°53' N, and <em>L. j. sinensis</em>, ssp. nov. at ca. 27°02'–28°00' N. These species were morphologically distinguishable by black spots on the tegmentum and the shape of spicules on the perinotum. In addition, we have discussed their molecular divergence times (3.37 mya for<em> L. koreana </em>and<em> L. japonica</em>, around the mid Pliocene warm period; 1.84 mya for <em>L. japonica </em>and <em>L. j. sinensis</em>), demographic expansion events following the last interglacial age, called the Eemian (129–116 kya), and augmentation of <em>COI</em> haplotype diversity during the late-middle to late Pleistocene. Their latitudinal geographical distribution gradients may be helpful for monitoring the migration of marine 38 invertebrates north, fostered by global warming in the northwestern Pacific.</p>
Geographic distribution of sites occupied by Crataegus sect. Douglasianae and C. sect. Salignae
<p>Geographic distribution of sites occupied by <em>Crataegus</em> sect. <em>Douglasianae</em> and <em>C.</em> sect. <em>Salignae</em> samples, together with those occupied by the <em>C.</em> subg. <em>Americanae</em> taxa with which comparison is made in Dickinson et al. (2021; Fig. 9). These sites are plotted on the map of the Köppen-Geiger climate classification (Kottek et al. 2006; Rubel et al. 2017; see http://koeppen-geiger.vu-wien.ac.at/present.htm) and visualized using Google Earth Pro. Conversion of the specimen data to the Google Earth Keyhole Markup Language (.kml) was carried out using the EarthPoint exceltokml function (https://www.earthpoint.us/exceltokml.aspx; Clark undated).</p> <p>Clark, W. Undated. Earthpoint—Tools for Google Earth. Available online: http://www.earthpoint.us/ (accessed on various dates 2015-2021).</p> <p>Dickinson, T.A.; Yan, B.X.; Han, S.; Zarrei, M. Niche Shifts, Hybridization, Polyploidy and Geographic<br> Parthenogenesis in Western North American Hawthorns (<em>Crataegus</em> subg. <em>Sanguineae</em>, Rosaceae). Agronomy 2021, 11 (in press).</p> <p>Kottek, M.; Grieser Jr Beck, C.; Rudolf, B.; Rubel, F. World Map of the Köppen-Geiger Climate Classification Updated. Meteorol. Z. 2006, 15, 259–263, doi:10.1127/0941-2948/2006/0130.</p> <p>Rubel, F.; Brugger, K.; Haslinger, K.; Auer, I. The Climate of the European Alps: Shift of Very High Resolution Köppen-Geiger Climate Zones 1800–2100. Meteorol. Z. 2017, 26, 115–125, doi:10.1127/metz/2016/0816.</p>
Fig. ². Geographical distribution of 7KRWWHD EHXQJRQWDQRHK Mustaqim (.)NJ in Thottea beungongtanoeh (Aristolochiaceae), a new species Irom Aceh, northern Sumatra
Fig. ². Geographical distribution of 7KRWWHD EHXQJRQWDQRHK Mustaqim (.)NJ
Data from: New geographic record in eastern Amazon Forest and potential distribution of Amphidecta calliomma (Lepidoptera: Nymphalidae)
<p><em><span>Amphidecta</span></em><span> <em>calliomma</em> is a butterfly species that occurs in Colombia, Bolivia, Peru, Venezuela, Ecuador, Panama and Brazil (in the states of Mato Grosso, Mato Grosso do Sul, Rondônia and Pará). Here, we present a new occurrence of <em>A</em>. <em>calliomma</em> in the Carajás National Forest (Pará, eastern Amazon), expanding the known distribution of the species. We also provide Species Distribution Model comparing the contribution of the new occurrence to species area of occurrence projections, supporting future field research. The projections reveal an expansion of area of occurrence for <em>A</em>. <em>calliomma</em> located mainly in the southeast portion of Amazon Forest. Despite its wide distribution, the small number of records of <em>A</em>. <em>calliomma</em> may indicate that the species has a low detectability in surveys. This study provides support for new surveys and reduces the knowledge gap about <em>A</em>. <em>calliomma</em>, thus supporting its conservation.</span></p>
Fig. 2 in Predicting the geographic distribution of Lucilia sericata and Lucilia cuprina (Diptera: Calliphoridae) in South Africa
Fig. 2. Modified Red-top™ fly trap used in surveys.
Fig. 4 in Predicting the geographic distribution of Lucilia sericata and Lucilia cuprina (Diptera: Calliphoridae) in South Africa
Fig. 4. Distribution of human population in South Africa in 2011 in terms of density.
Predicting geographic distribution and habitat suitability of Opuntia streptacantha in paleoclimatic, current, and future scenarios in Mexico
<p>Geographical records. A total of 825 records (Figure 1), representing the natural distribution historically recognized for <em>O</em>. <em>streptacantha.</em></p> <p>Maps for past, current, and future models in QGIS format</p>
Phylogeography of Limia vittata (Cyprinodontiformes: Poeciliidae): geographical distribution of mitochondrial haplotypes is comparable to other Cuban poeciliids
<p>This is the supplementary material associated with the article "Phylogeography of <em>Limia vittata</em> (Cyprinodontiformes: Poeciliidae): geographical distribution of mitochondrial haplotypes is comparable to other Cuban poeciliids", published by the Biological Journal of the Linnean Society (<a href="https://doi.org/10.1093/biolinnean/blad040">https://doi.org/10.1093/biolinnean/blad040</a>). The following documents (pdf format) are included:</p> <p><strong>Supporting Information 1 </strong></p> <p><strong>Table S1.</strong> Sampling size (n) and haplotype (<em>COI</em>+<em>CR</em>) information for each sampling locality of <em>L. vittata</em> included in this study. Numbers correspond to those indicated in Figure 1. A star (*) represents a new locality record for <em>L. vittata</em>. ANC: acronym of the Acuario Nacional de Cuba Collection, La Habana, Cuba.</p> <p><strong>Supporting Information 2</strong></p> <p><strong>Table S1.</strong> Prior distribution of parameters used for the analysis of the <em>L. vittata</em> data based on the ABC approach using DIYABC v.2.1.0 (<a href="#CIT0008">Cornuet <em>et al</em>., 2014</a>). Time is in generations. W-PR: Western Pinar del Río population, W-C: Western-Central population, C-E: Central-Eastern population.</p> <p><strong>Table S2.</strong> Summary statistics between <em>L. vittata</em> haplogroups for each scenario based on 3 × 10<sup>6</sup> simulated datasets. NHA: number of alleles, NSS: number of segregating sites, MPD: mean of pairwise differences, VPD: variance of pairwise differences, MP2: mean pairwise differences within samples, MPB: mean pairwise differences between samples, HST: F<sub><em>ST</em></sub> between samples.</p> <p><strong>Table S3.</strong> Posterior distributions of the parameters based on scenario B for <em>L. vittata</em>. Data were obtained from 1% of the simulated dataset (1 × 10<sup>6</sup>). Time is in generations. W-PR: Western Pinar del Río population, W-C: Western-Central population, C-E: Central-Eastern population. RMAE: relative median of absolute error.</p> <p><strong>Figure S1.</strong> PCA of the summary statistics of the observed dataset and the dataset generated from the prior distribution of parameters to evaluate the three biogeographic scenarios explaining the current distribution of <em>L. vittata</em>. The analysis was performed using DIYABC v.2.1.0 (<a href="#CIT0008">Cornuet <em>et al.</em>, 2014</a>).</p> <p><strong>Figure S2.</strong> Posterior probability of the biogeographic scenarios tested to explain the current distribution of <em>L. vittata</em>. Logistic regression was used to compute the posterior probability using the ABC approach as implemented in DIYABC v.2.1.0 (<a href="#CIT0008">Cornuet <em>et al.</em>, 2014</a>).</p> <p><strong>Supporting Information 3</strong></p> <p><strong>Figure S1.</strong> Bayesian tree depicting the relationships of 160 partial <em>COI</em>+<em>CR</em> sequences of <em>L. vittata</em>. The red dots depict samples from eastern localities (Yateras, Sabanalamar, and Yacabo Abajo) sharing the W-C haplogroups (H9 and H10). Bootstrap support (≥ 93) and Bayesian posterior probabilities (≥ 0.95) are shown for the main clades.</p> <p><strong>Supporting Information 4</strong></p> <p><strong>Figure S1.</strong> Mismatch distribution of pairwise haplotype differences from partial <em>COI</em> and <em>CR</em> sequences for the three haplogroups recovered in <em>L. vittata</em>. Dashed lines represent the distribution of the observed pairwise nucleotide differences, whereas solid lines represent the values expected after a population growth or decline model.</p> <p><strong>Supporting Information 5</strong></p> <p><strong>Figure S1.</strong> Maximum Likelihood tree and haplotype network of <em>Girardinus falcatus</em>, <em>Girardinus metallicus,</em> and the <em>Gambusia punctata</em> species complex based on <em>cytb</em> partial sequences. Each colour represents a geographic region in Cuba. Green: westernmost Cuba, blue: western Cuba, orange: central Cuba, red: eastern Cuba. Numbers on tree branches are bootstrap values ≥ 95% and hatch marks on the networks are the number of mutations. n: number of individuals, H: number of haplotypes, <em>h</em>: haplotype diversity, π: nucleotide diversity, SD: standard deviation.</p> <p><strong>Table S1.</strong> Sampling size (n), GenBank accession numbers, and studies that made available the sequences of cytochrome <em>b</em> used for the phylogeographic comparisons of the different poeciliids in Cuba.</p>
Fish species classification, trophic guilds and geographical distribution of northeast China
<p>Muling River, surrounded by cultivated land of Heilongjiang Province in the northeast of China, experienced sand-digging activities for a long time, and its riverbed has been seriously damaged. However, the knowledge about the impact of this disturbance on the status of fish community structure and diversity was little studied in this river. In this study, environmental factors and fish assembles from Muling River were investigated in spring, summer and autumn of 2015 and 2017, respectively. During the investigation period, 46 species of five orders and 12 families of fish were classified into seven trophic guilds. Our results demonstrated that the fish species diversity indices and variation trends of the Shannon-Wiener diversity index, Pielou evenness index and Margalef richness index were consistent. RDA analysis showed that water depth was significantly correlated with zooplankton feeding habits, and transparency correlated with aquatic plant feeding. This study supports the need for trophic guilds taxonomic studies of freshwater fishes to underpin management in areas subject to significant environmental change.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.