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410
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ShareScore release 0.9.0
Dataset results
410 results for “Mitochondrial gene”
ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
GEO Series GSE271837. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mare-MAGE database A curated reference database of fish mitochondrial genes
<div> <p>Biodiversity assessment approaches based on molecular biology techniques such as NGS, metabarcoding, RAD-seq, or SnaPshot sequencing, are increasingly used in assessing marine and aquatic ecosystems. In this study, we present a new reference database for fish meta-barcoding based on mitochondrial genes. The <strong><em>Mare-MAGE</em></strong> database contains quality-checked sequences of the mitochondrial genes for 12S ribosomal RNA and Cytochrome c Oxidase I. All sequences were obtained from the National Center for Biotechnology Information- GenBank (NBCI-GenBank) and the European Nucleotide Archive (ENA) and have undergone intensive processing. They were checked for false annotations and non-target anomalies, according to the Integrated Taxonomic Information System (ITIS) and FishBase. The dataset is compiled in ARB-Home, FASTA and Qiime2 formats, and is publicly available from the <strong><em>Mare-MAGE</em></strong> database website (<a href="http://mare-mage.weebly.com/">http://mare-mage.weebly.com/</a> and <a href="https://figshare.com/projects/MARE-MAGE_database_Fish/90917">https://figshare.com/projects/MARE-MAGE_database_Fish/90917</a>). It includes altogether 231,333 COI and 12S rRNA gene sequences of fish covering 19,506 species of 4,058 genera and 586 families.</p> </div> <div> <div> </div> </div>
Figure 2 in A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes
Figure 2. Base composition of the CO1 genes of eight Grapsoidea species.
Figure S2 in A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes
Figure S2. Amino acid sequences alignment information of the CO1 genes of eight Grapsoidea species.
Data from: Screen for mitochondrial DNA copy-number maintenance genes reveals essential role for ATP synthase
The machinery of mitochondrial DNA (mtDNA) maintenance is only partially characterized and is of wide interest due to its involvement in disease. To identify novel components of this machinery, plus other cellular pathways required for mtDNA viability, we implemented a genome-wide RNAi screen in Drosophila S2 cells, assaying for loss of fluorescence of mtDNA nucleoids stained with the DNA-intercalating agent PicoGreen. In addition to previously characterized components of the mtDNA replication and transcription machineries, positives included many proteins of the cytosolic proteasome and ribosome (but not the mitoribosome), three proteins involved in vesicle transport, some other factors involved in mitochondrial biogenesis or nuclear gene expression, > 30 mainly uncharacterized proteins and most subunits of ATP synthase (but no other OXPHOS complex). ATP synthase knockdown precipitated a burst of mitochondrial ROS production, followed by copy number depletion involving increased mitochondrial turnover, not dependent on the canonical autophagy machinery. Our findings will inform future studies of the apparatus and regulation of mtDNA maintenance, and the role of mitochondrial bioenergetics and signaling in modulating mtDNA copy number.
Identification of New Candidate Genes in Patients With Mitochondrial Disease by High Resolution Chromosome Analysis on DNA Chip
ClinicalTrials.gov study NCT03857880. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Time-course of Mitochondrial Biogenic Gene and Protein Expression in Exercised Human Skeletal Muscle
ClinicalTrials.gov study NCT03975777. IPD Sharing: NO. Countries: 1. Publications: 0.
Identification of Large-Scale Mutations of POLG Gene by QMPSF in Patients With Mitochondrial DNA Instability.
ClinicalTrials.gov study NCT00831948. IPD Sharing: Not stated. Countries: 1. Publications: 0.
MitoPerturb-Seq identifies gene-specific single-cell responses to mitochondrial DNA depletion and heteroplasmy [multiome]
GEO Series GSE297418. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Pioglitazone induces extensive PPARg-dependent hepatic expression of nuclear-mitochondrial genes
GEO Series GSE137820. Mus musculus. 80 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Data from: Screen for mitochondrial DNA copy-number maintenance genes reveals essential role for ATP synthase
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Non-cell Autonomous Mechanisms Control Mitochondrial Gene Dysregulation in Polycystic Ovary Syndrome
GEO Series GSE188740. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish
GEO Series GSE167587. Danio rerio. 12 samples. Type: Expression profiling by high throughput sequencing.
MitoPerturb-Seq identifies gene-specific single-cell responses to mitochondrial DNA depletion and heteroplasmy [DamID]
GEO Series GSE297491. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The role of TEFM in mitochondrial gene expression [TruSeq]
GEO Series GSE102254. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
MitoPerturb-Seq identifies gene-specific single-cell responses to mitochondrial DNA depletion and heteroplasmy [RNA-Seq]
GEO Series GSE297416. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Regulatory principles of human mitochondrial gene expression revealed by kinetic analysis of the RNA life cycle
GEO Series GSE224662. Homo sapiens. 98 samples. Type: Expression profiling by high throughput sequencing; Other.
EPAS1 directs a network of genes implicated in mitochondrial dysfunction in arrhythmogenic cardiomyopathy [RNA-seq]
GEO Series GSE213539. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Next generation sequencing facilitates quantitative analysis of maize 35 mitochondrial genes in dek53-ref and wild-type (WT) kernels
GEO Series GSE141324. Zea mays. 12 samples. Type: Expression profiling by high throughput sequencing.
YY1 Control of Mitochondrial-Related Genes does not Account for Regulation of Immunoglobulin Class Switch Recombination
GEO Series GSE145161. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.