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452 results for “Mitogenomics”
Figure 1 from: Reyes-Velasco J, Goutte S, Freilich X, Boissinot S (2021) Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). ZooKeys 1070: 135-149. https://doi.org/10.3897/zookeys.1070.66598
Figure 1 Map of Ethiopia showing localities of individuals in the Ptychadena neumanni species complex used in this study. Samples with genetic data are represented by different colored circles (P. neumanni species group) or triangles (P. erlangeri species group). Stars depict the approximate type localities of P. neumanni (red), P. erlangeri (grey), and P. nana (white). A black star represents Addis Ababa, the type locality of P. largeni, a junior synonym of P. erlangeri. The approximate route of Oscar Neumann and Carlo von Erlanger's 1900 expedition in Abyssinia, during which the type specimens of all the above species were collected (except for P. largeni) is represented by a dashed line. Black arrow indicates the likely correct type locality for P. erlangeri as suggested by the authors (see Discussion).
Supplementary material 1 from: Reyes-Velasco J, Goutte S, Freilich X, Boissinot S (2021) Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). ZooKeys 1070: 135-149. https://doi.org/10.3897/zookeys.1070.66598
Detailed guidelines for the DNA extraction from museum specimens used in this study
Figure 3 from: Reyes-Velasco J, Goutte S, Freilich X, Boissinot S (2021) Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). ZooKeys 1070: 135-149. https://doi.org/10.3897/zookeys.1070.66598
Figure 3 Phylogenetic inference of members of the Ptychadena neumanni species complex based on mtDNA and ddRAD-seq data A unrooted UPGMA tree of members of the P. neumanni species complex based on 2182 SNPs obtained with ddRAD-sequencing B unrooted Bayesian phylogenetic inference based on the complete mitochondrial genomes of members of the group C bayesian phylogenetic inference based on the concatenated sequences of the 12S and 16S rRNA and cox1. Black circles represent nodes with a posterior support of 1. Names in bold indicate type specimens, while stars indicate historical type specimens sequenced here and are color-coded as in Figure 1. Photographs represent members of the P. neumanni species complex; P. erlangeri (top), P. neumanni (bottom).
Figure 2 from: Reyes-Velasco J, Goutte S, Freilich X, Boissinot S (2021) Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). ZooKeys 1070: 135-149. https://doi.org/10.3897/zookeys.1070.66598
Figure 2 Comparisons of the topologies of the mitochondrial rRNA 16S (left) and ddRAD-seq (right) for members of the Ptychadena neumanni species complex. Type specimens are indicated in red in the 16S phylogeny. Red lines indicate clades that differ in their placement between 16S and ddRAD-seq, however, the assignment of individuals to a particular species is identical between datasets. Numbers at nodes represent posterior support (pp), while black dots represent nodes with posterior support of 1.
Figure 1 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Figure 1 Original drawing presented by Latreille (1811) illustrating the description of Reduvius dimidiatus.
Figure 4 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Figure 4 Pairwise Kimura 2-parameter distances between publicly available sequences and sequences from the neotype. Dashed lines indicate the barcode-like gap for each marker.
Supplementary material 4 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Mitochondrial genome gene table
Figure 6 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Figure 6 Pronotum of Triatoma dimidiata neotype (male). Detail of the anterior lobe of the pronotum, showing the discal tubercle (right arrow) and lateral tubercle (left arrow).
Supplementary material 1 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Specimens metadata
Supplementary material 3 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
R code for barcode-like and cluster analyses 3
Figure 8 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Figure 8 Legs of Triatoma dimidiata neotype (male) A detail of the pair of subapical denticles present on the forelegs B pair of subapical denticles present on the midlegs. Hindlegs do not present denticles.
Supplementary material 2 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
GenBank numbers list
FIGURE 19 in Contribution to the Chinese subfamily Rhaphidophorinae Walker, 1869 (Orthoptera: Rhaphidophoridae: Rhaphidophorinae) IV: Seven new species of Rhaphidophora and one new mitogenome
FIGURE 19. The relative synonymous codon usage (RSCU) of Rhaphidophora quadrispina.
FIGURE 21 in Contribution to the Chinese subfamily Rhaphidophorinae Walker, 1869 (Orthoptera: Rhaphidophoridae: Rhaphidophorinae) IV: Seven new species of Rhaphidophora and one new mitogenome
FIGURE 21. Habitus of Rhaphidophora incilis Bian, Zhu & Shi, 2017.
Supplementary material 7 from: Li X-R (2022) Phylogeny and age of cockroaches: a reanalysis of mitogenomes with selective fossil calibrations. Deutsche Entomologische Zeitschrift 69(1): 1-18. https://doi.org/10.3897/dez.69.68373
Figue S4
Supplementary material 6 from: Li X-R (2022) Phylogeny and age of cockroaches: a reanalysis of mitogenomes with selective fossil calibrations. Deutsche Entomologische Zeitschrift 69(1): 1-18. https://doi.org/10.3897/dez.69.68373
Figure S3
Supplementary material 12 from: Li X-R (2022) Phylogeny and age of cockroaches: a reanalysis of mitogenomes with selective fossil calibrations. Deutsche Entomologische Zeitschrift 69(1): 1-18. https://doi.org/10.3897/dez.69.68373
Figure S9
Supplementary material 13 from: Li X-R (2022) Phylogeny and age of cockroaches: a reanalysis of mitogenomes with selective fossil calibrations. Deutsche Entomologische Zeitschrift 69(1): 1-18. https://doi.org/10.3897/dez.69.68373
Figure S10
Supplementary material 11 from: Li X-R (2022) Phylogeny and age of cockroaches: a reanalysis of mitogenomes with selective fossil calibrations. Deutsche Entomologische Zeitschrift 69(1): 1-18. https://doi.org/10.3897/dez.69.68373
Figure S8
Supplementary material 10 from: Li X-R (2022) Phylogeny and age of cockroaches: a reanalysis of mitogenomes with selective fossil calibrations. Deutsche Entomologische Zeitschrift 69(1): 1-18. https://doi.org/10.3897/dez.69.68373
Figure S7
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