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317
datasets available to search
ShareScore release 0.9.0
Dataset results
317 results for “R code”
The DEAD-box protein Dbp2p is linked to non-coding RNAs, the helicase Sen1p, and R-loops [iCLIP]
GEO Series GSE113488. Saccharomyces cerevisiae. 2 samples. Type: Expression profiling by high throughput sequencing; Other.
The DEAD-box protein Dbp2p is linked to non-coding RNAs, the helicase Sen1p, and R-loops
GEO Series GSE113489. Saccharomyces cerevisiae. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
ALI_CRL_and_MCL_data_analysis_R_code
<p>Water and sediment samples were collected from Chang-re Lake (CRL) and Mang co Lake (MCL), the northwestern Tibetan Plateau. Using multi-marker metabarcoding of eDNA derived from water at multiple depths and from sediments, we analyzed the community composition of four taxonomic groups representative of different trophic levels, including cyanobacteria (CYA), diatoms (DIA), invertebrates (INV), and vertebrates (VER). Here are the R scripts used in this study.</p>
Datasets and R code for Liu et al. A global meta-analysis on the drivers of salt marsh planting success and implications for ecosystem services
<p>Planting has been widely adopted to battle the loss of salt marshes and to establish living shorelines. However, the drivers of success in salt marsh planting and their ecological effects are poorly understood at the global scale. Here, we assemble a global database, encompassing 22,074 observations reported in 210 studies, to examine the drivers and impacts of salt marsh planting. We show that, on average, 53% of plantings survived globally, and plant survival and growth can be enhanced by careful design of sites, species selection, and novel planted technologies. Planting enhances shoreline protection, primary productivity, soil carbon storage, biodiversity conservation and fishery production (effect sizes = 0.61, 1.55, 0.21, 0.10 and 1.01, respectively), compared with degraded wetlands. However, the ecosystem services of planted marshes, except for shoreline protection, have not yet fully recovered compared with natural wetlands (effect size = -0.25, 95% CI -0.29, -0.22). Fortunately, the levels of most ecological functions related to climate change mitigation and biodiversity increase with plantation age when compared with natural wetlands, and achieve equivalence to natural wetlands after 5-25 years. Overall, our results suggest that salt marsh planting could be used as a strategy to enhance shoreline protection, biodiversity conservation and carbon sequestration.</p>
Attentional bias score raw data and R codes
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Input data and R code for "Larger male Yellow Warbler ( Setophaga petechia ) occupy smaller home ranges over winter in natural and agricultural sites in western Mexico"
<p>Data used for modeling Yellow Warbler home ranges in western Mexico from 2012 to 2014.</p> <p> </p> <p> </p>
Data associated with "Exploring Prescribing Trends: An R Shiny App for Visualizing the Top 100 Most Commonly Prescribed Medications and Their Distribution by ATC Code"
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The DEAD-box protein Dbp2p is linked to non-coding RNAs, the helicase Sen1p, and R-loops [RNA-Seq]
GEO Series GSE113487. Saccharomyces cerevisiae. 4 samples. Type: Expression profiling by high throughput sequencing.
R code and patient data for 'Bacterial Transmission Dynamics Revealed by Prophage Barcoding'
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R code and datasets for ITS2 DNA metabarcoding stigma sequence data
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R code for the "Plant genetic diversity affects multiple trophic levels and trophic interactions"
<p>R code for the "Plant genetic diversity affects multiple trophic levels and trophic interactions"</p>
Dataset and R-Code_NAO Reconstruction_Schirrmacher et al
<p>This dataset and the accroding R codes allow the reproduction of the analysis carried out in Schirrmacher et al. submitted to Nature.</p>
An R Shiny App for Visualizing the Top 100 Most Commonly Prescribed Medications and Their Distribution by ATC Code"
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Dataset & R code used to analyse the prevalence of the FME-D combination in Parids
<p>This R code and the associated dataset are the raw and organised data used to analyse the prevalence of the FME-D combination in Parids. We recorded 7 different species of Parids when mobbing and analysed whether (1) they produced two distinct classes on notes (FME and D notes) and (2) whether they combined it with the FME followed by the D notes. </p>
Data and R code from: Survival analysis of wildlife cameras exposed to theft
<p>Data set an R code used to reproduce the analysis presented in Cardona et al. "Survival analysis of wildlife cameras exposed to theft".</p>
R codes for plant genetic diversity effects on trophic groups and interactions
<p>R codes for plant genetic diversity effects on trophic groups and interactions</p>
Data and R code for "Network analysis of workshop activities reveals increasing transdisciplinarity of German biodiversity research community"
<p>This is the dataset and all files needed to re-run the R analysis in " Network analysis of workshop activities reveals increasing transdisciplinarity of German biodiversity research community ".</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.