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975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection
GEO Series GSE281759. Homo sapiens. 17 samples. Type: Other.
10X Visium Spatial transcriptomics of murine colon in steady state and during recovery after DSS colitis
GEO Series GSE169749. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Single-cell and spatial transcriptome analysis revealed the immunomodulatory role of T cells in the colon cancer tumor microenvironment
GEO Series GSE288119. Homo sapiens. 6 samples. Type: Other.
Single cell and spatial transcriptomics analysis of kidney double negative T lymphocytes in normal and ischemic mouse kidneys [scRNA-Seq]
GEO Series GSE233511. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
A spatial and projection-based transcriptomic atlas of paraventricular hypothalamic cell types (Drop-Seq)
GEO Series GSE303080. Mus musculus. 29 samples. Type: Expression profiling by high throughput sequencing.
Spatial Transcriptomics Unravels Palmitoylation and Zonation-Dependent Gene Regulation by AEG-1 in Mouse Liver
GEO Series GSE261057. Mus musculus. 2 samples. Type: Other.
Multi-omic analysis reveals retinoic acid molecular drivers for fibrosis and regenerative repair in skin fibrosis [Spatial transcriptomics]
GEO Series GSE278169. Mus musculus. 7 samples. Type: Other.
Single-nucleus Ribonucleic Acid-sequencing and Spatial Transcriptomics Reveal the Cardioprotection of Shexiang Baoxin Pill (MUSKARDIA) in Mice with Myocardial Ischemia-Reperfusion Injury
GEO Series GSE227088. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Spatial epigenome-transcriptome co-profiling of mammalian tissues [spatial CUT&Tag]
GEO Series GSE217091. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Epithelial-Immune Metabolic Codependency Fuels Inflammatory Disease [Spatial Transcriptomics]
GEO Series GSE237771. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Metabolic incorporation of electron-rich ribonucleosides enhances APEX-seq for profiling spatially restricted nascent transcriptome
GEO Series GSE192739. Homo sapiens. 40 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptome of Nematostella vectensis apical organ reveals its molecular signature and associated cells
GEO Series GSE159166. Nematostella vectensis. 10 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptome analysis of brain region in grass puffer (Takifugu alboplumbeus)
GEO Series GSE186818. Takifugu alboplumbeus. 1 samples. Type: Expression profiling by high throughput sequencing.
Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics [RNA-seq]
GEO Series GSE188844. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics
GEO Series GSE266244. Homo sapiens; Mus musculus. 12 samples. Type: Other.
Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC [TCR-Seq]
GEO Series GSE300435. Homo sapiens. 30 samples. Type: Other.
Integrated Spatial Transcriptomics and Single-Cell RNA Sequencing Reveal Lars2-Mediated Spatiotemporal Dynamics of Myocardial Remodeling in a Mouse Model of Transverse Aortic Constriction (TAC)
GEO Series GSE308859. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Salmonella typhimurium targets distal colonocytes to trigger infection [Spatial Transcriptomics]
GEO Series GSE290762. Mus musculus. 4 samples. Type: Other.
Characterization of stress-susceptible cells and gene in mouse brain via Spatial Transcriptomics
GEO Series GSE228394. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial Transcriptomics correlated Electron Microscopy [scRNA-Seq]
GEO Series GSE202636. Mus musculus. 1332 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.