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18,745 results for “Taxonomies”
Figure 16 in Updating the taxonomy of the bee genus Megalopta (Hymenoptera: Apidae, Augochlorini) including revision of the Brazilian species
Figure 16. Distribution records of Megalopta species. (A) M. cuprea Friese; (B) M. munduruku sp. n; (C) M. sodalis Vachal.
Figure 9 in Updating the taxonomy of the bee genus Megalopta (Hymenoptera: Apidae, Augochlorini) including revision of the Brazilian species
Figure 9. Males of Megalopta. (A) Dorsal view of flagellum of M. guimaraesi from Formosa, Brazil; (B) ventral view of sternum 3‒4 of M. amoena from Alenquer, Brazil; (C, E) dorsal view of head; (D, F) Frontal view of head; (C) M. guarani sp. n. from Chapada dos Guimarães, Brazil; (D) M. mapinguari sp. n. from Rio Branco, Brazil; (E) M. xavante sp. n. from Nova Xavantina, Brazil; (F) M. atlantica Santos & Silveira from Ipanema, Brazil. Scale bar 1 mm.
Figure 2 in Updating the taxonomy of the bee genus Megalopta (Hymenoptera: Apidae, Augochlorini) including revision of the Brazilian species
Figure 2. Females of Megalopta. (A) Lateral view of head of M. guimaraesi Santos & Silveira from Alto Paraíso de Goiás, Brazil; (B‒F). posterolateral view of mesosoma; (B) M. nitidicollis Friese from Rio Branco, Brazil; (C) M. aeneicollis Friese from Novo Airão, Brazil; (D) M. aegis Vachal from Caldas Novas, Brazil; (E) M. chaperi Vachal from Amajari, Brazil; (F) M. amoena Spinola from Alenquer, Brazil. Scale bar 1 mm.
Figure 4 in Updating the taxonomy of the bee genus Megalopta (Hymenoptera: Apidae, Augochlorini) including revision of the Brazilian species
Figure 4. Females of Megalopta. (A‒E) Posterolateral view of mesosoma; (A) Megalopta yanomami sp. n. from Parauapebas, Brazil; (B) M. piraha sp. n. from Manaus, Brazil; (C) M. munduruku sp. n. from Belterra, Brazil; (D) M. cuprea Friese from Nigrillani, Bolivia; (E) M. sodalis Vachal from Antonina, Brazil; (F) frontal view of head of M. xavante sp. n from Nova Xavantina, Brazil. Scale bar 1 mm.
Figure 1 in Evaluation of the taxonomy of Helix cincta (Muller, 1774) and Helix nucula (Mousson, 1854); insights using mitochondrial DNA sequence data
Figure 1. Map showing the localities of samples used in the present study representing the morphologically defined species and the distribution of Helix cincta (dash line, light grey) and Helix nucula (continuous line, dark grey).
Figure 10 in Taxonomy of the genus Oriverutus Siddiqi, 1971 (Nematoda: Dorylaimida: Nordiidae)
Figure 10. Parapalus arboricola Loof and Zullini, 2000 (light microscopy). (A–C) Neck region of female, male and J4, respectively; (D) J4, anterior region in median, lateral view; (E) Male, anterior region in median, lateral view; (F) Male, lip region and amphid fovea in submedian, lateral view; (H) Vagina; (I) Male, spicules and caudal region. Scale bars: A–C = 100 µm; D–F, H = 5 µm; G = 10 µm; I = 20 µm.
Molecular species delimitation of larks (Aves: Alaudidae), and integrative taxonomy of the genus Calandrella, with the description of a range-restricted African relic taxon
<p>This deposition contains the phylogenetic and species delimitation data for the manuscript "Molecular species delimitation of larks (Aves: Alaudidae), and integrative taxonomy of the genus <em>Calandrella</em>, with the description of a range-restricted African relic taxon" by Stervander <em>et al</em>. </p> <p>For details of samples/sequences/leaves, please refer to Appendix A of the above manuscript. </p> <p><strong>Phylogenetic analyses</strong></p> <ol> <li>Fasta sequence alignment of cytochrome b for the lark family and outgroups: Alaudidae_cytb_extended_200316.fa</li> <li>BEAST v. 2.6.1 input file: Alaudidae_cytb_HKYGI_BDrelLN_modOp2003_20M1K.xml</li> <li>BEAST v. 2.6.1 output log file: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K.log</li> <li>BEAST v. 2.6.1 output (raw) trees file: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K.trees</li> <li>TreeAnnotator maximum credibility clade tree based on BEAST v. 2.6.1 output, newick format: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K_c40Mbi5.mccmed.nwk</li> </ol> <p><strong>Species delimitation</strong></p> <ol> <li>Input tree, manipulated to remove negative branch lengths (replaced by 0) and tips/leafs that are single representatives of a species, based on current taxonomy (IOC v. 10.2), newick format: Alaudidae_cytb_HKYGI_BDrelLN_c40Mbi5_mccmed_nonNeg_multiSeq_ingroup_remDuplicate.nwk</li> <li>mPTP text output of the multi-rate species delimitation, containing command for run and species delimitation results: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.1602073064.txt</li> <li>mPTP likelihood log of the multi-rate species delimitation: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.out.txt</li> <li>mPTP output tree in SVG format, with support values for species delimitation: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.1602073064.combined.svg</li> </ol>
Fig. 2 in Integrative taxonomy reveals two new cryptic species of Hyphessobrycon Durbin, 1908 (Teleostei: Characidae) from the Maracaçumé and middle Tocantins River basins, Eastern Amazon region
Fig. 2. Hyphessobrycon frickei Guimarães, Brito, Bragança, Katz & Ottoni sp. nov. (CICCAA 02388), 17.7 mm SL; jaw suspensory. A. Premaxillary. B. Maxilla. C. Dentary. Scale bar: 1 mm
Fig. 8 in Integrative taxonomy reveals two new cryptic species of Hyphessobrycon Durbin, 1908 (Teleostei: Characidae) from the Maracaçumé and middle Tocantins River basins, Eastern Amazon region
Fig. 8. Topology of the ultrametric tree performed in BEAST ver. 1.8.4 including unique haplotypes summarizing the results of GMYC, bPTP and ABGD. Numbers above and below branches are posterior probability values. The star indicates the Hyphessobrycon copelandi clade.
FIG. 9 in Monstrosities from the Sea. Taxonomy and tradition in Conrad Gessner's (1516-1565) discussion of cetaceans and sea-monsters
FIG. 9. — Monachus marinus, sea-monk. Conrad Gessner (1558: 519). Bayerische Staatsbibliothek München, Rar. 2234.
FIG. 4 in Monstrosities from the Sea. Taxonomy and tradition in Conrad Gessner's (1516-1565) discussion of cetaceans and sea-monsters
FIG. 4. — Anglicus cetus, Atlantic spotted dolphin.Conrad Gessner (1558: 256). Bayerische Staatsbibliothek München, Rar. 2234.
FIG. 1 in Monstrosities from the Sea. Taxonomy and tradition in Conrad Gessner's (1516-1565) discussion of cetaceans and sea-monsters
FIG. 1. — Leo Marinus, sea lion. Conrad Gessner (1558: 558). Bayerische Staatsbibliothek München, Rar. 2234.
FIG. 6 in Monstrosities from the Sea. Taxonomy and tradition in Conrad Gessner's (1516-1565) discussion of cetaceans and sea-monsters
FIG. 6. — Cetus oceani Germanici, North Sea whale. Conrad Gessner (1558: 255). Bayerische Staatsbibliothek München, Rar. 2234.
FIG. 3 in Monstrosities from the Sea. Taxonomy and tradition in Conrad Gessner's (1516-1565) discussion of cetaceans and sea-monsters
FIG. 3. — Balaena vulgo, bowhead whale. Conrad Gessner (1558: 132). Bayerische Staatsbibliothek München, Rar. 2234.
FIG. 11 in Monstrosities from the Sea. Taxonomy and tradition in Conrad Gessner's (1516-1565) discussion of cetaceans and sea-monsters
FIG. 11. — Monstrum marinus, sea-monster. Conrad Gessner (1558: 522). Bayerische Staatsbibliothek München, Rar. 2234.
DADA2 formatted taxonomy from GTDBr95
<p>DADA2 requires taxonomy files in a specific format. This datasets are the files required to assign taxonomy using Genome Taxonomy Database (GTDB) database.</p> <p>GTDB release 95.0 is the latest version of database released on July 17th, 2020. GTDB-r95 contains 30,238 bacterial and 1,672 archaeal species clusters which span 194,600 genomes. FASTA file of 16S rRNA gene sequences identified within the representative genomes of bacteria (21965) and Archaea (1126) were downloaded from this <a href="https://data.ace.uq.edu.au/public/gtdb/data/releases/release95/95.0/genomic_files_reps/">link</a> on 24-12-2020. The link provides resources for GTDB species representatives hence, limiting one sequence per organism. The sequence headers were modified according to DADA2 requirements using regular expression based replace in Notepad++ (I was too lazy to do the same through awk/sed). </p> <p>Files <a href="https://zenodo.org/api/files/8b1de4c7-ce83-488b-b399-cc27dbadfaed/GTDBr95-Genus.fna">GTDBr95-Genus.fna</a> and <a href="https://zenodo.org/api/files/8b1de4c7-ce83-488b-b399-cc27dbadfaed/GTDBr95-Species.fna">GTDBr95-Species.fna</a> are to be used with assignTaxonomy and addSpecies commands of DADA2, respectively.</p> <p>Prepared files were checked and found compatible when run on DADA2 v1.14.0 (R v3.6.3).</p>
Figs 14–16 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology
Figs 14–16. Mumetopia interfeles Roháček sp. nov., female paratypes (SMOC MIT076–MIT078). 14. Body of aberrant specimen, lateral view. 15. Right wing. 16. Posterior part of thorax and abdomen, dorsal view. Scale bars = 0.5 mm. Photos by P. Krásenský.
Figs 1–3 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology
Figs 1–3. Mumetopia interfeles Roháček sp. nov., ♂. 1. Holotype (SMOC MIT001), lateral view. 2. Right wing, paratype (SMOC MIT003). 3. Head and thorax, paratype (SMOC MIT002), laterodorsal view. Scale bars = 0.5 mm. Photos by P. Krásenský.
Fig. 32 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology
Fig. 32. Bayesian hypothesis for relationships of 64 species of Anthomyzidae based on DNA sequence data (12S, 16S, 28S, COI, COII, CytB, ITS2) representing 4583 characters. Numbers above nodes = posterior probability values if> 0.5, and below nodes = bootstrap support values for RAxML.
Figs 17–21 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology
Figs 17–21. Mumetopia interfeles Roháček sp. nov., female paratypes (SMOC MIT080–MIT083). 17. Abdomen, dorsal view. 18, 21. Spermatheca. 19. Genital chamber and S8, lateral view. 20. Same, ventral view (setosity of S8 omitted). Scale bars: 17 = 0.2 mm; 18, 21= 0.05 mm; 19–20 = 0.1 mm. For abbreviations see Material and methods.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.