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Underwater photosynthetically active radiation (PAR) vertical profiles collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2025, ongoing)
As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, lakes are monitored for photosynthetic active radiation (PAR) levels. This data set exemplifies the vertical profile of underwater PAR profiles in perennial ice covered lakes and ambient PAR measured at the air-ice interface. Profile data can be used to calculate extinction coefficients for the water column and ice layer.
Nitrogen and phosphorus concentrations in discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2020, ongoing)
An important part of the McMurdo Long Term Ecological Research (LTER) project is identifying patterns and movements of nutrients in perennial ice-covered lakes. This dataset addresses this core area of research and quantifies macronutrient concentrations (NH4+, NO3-, NO2, SRP) found at specific depths in McMurdo Dry Valley lakes.
Particulate organic carbon (POC) and nitrogen (PON) concentrations in discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2024, ongoing)
An important part of the McMurdo Long Term Ecological Research (LTER) is evaluating carbon and nitrogen budgets in perennial ice-covered lakes. This dataset addresses this core area of research and quantifies the particulate organic carbon (POC) and nitrogen (PON) found at specific depths in lakes across the McMurdo Dry Valleys of Antarctica.
Dissolved inorganic carbon (DIC) concentrations in discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2023, ongoing)
The McMurdo Long Term Ecological Research (LTER) project monitors patterns of inorganic material transport in perennial ice-capped lakes. This data set addresses this core area of research and quantifies dissolved inorganic carbon concentrations at specific depths in McMurdo Dry Valley lakes. Dissolved inorganic carbon is also necessary for the computation of primary productivity.
Hydrogen ion concentrations (pH) in discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2024, ongoing)
As part of the McMurdo Long Term Ecological Research (LTER) project in the Dry Valleys of Antarctica, hydrogen ion concentrations were monitored in various lakes of the region. An Orion portable pH meter was used to record hydrogen ion concentrations at depth specific intervals in perennial ice-covered lakes.
Conductivity, temperature, and depth (CTD) vertical profiles collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2025, ongoing)
As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a series of Taylor Valley lakes have been monitored for conductivity, temperature, and depth (CTD). A Seabird instrument was used to record CTD profiles in these perennial ice covered lakes.
Particulate phosphorus concentrations in discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (2006-2019)
An key component of the McMurdo Dry Valleys Long Term Ecological Research (LTER) project involves the long-term monitoring of nutrient cycles. This data package contributes to this core area of research by quantifying particulate phosphorus concentrations found at specific depths in several perennially ice-covered lakes in the McMurdo Dry Valleys region of Antarctica.
Dissolved oxygen concentrations in discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (2010-2018, ongoing)
As part of the McMurdo Dry Valleys Long Term Ecological Research (LTER) project, dissolved oxygen (DO) concentrations have been monitored in several perennially ice-covered lakes in the McMurdo Dry Valleys of Antarctica, including Lakes Fryxell, Hoare, Bonney, and Miers. DO concentrations at varying depths within the water column were measured using mini-Winkler titrations, providing valuable insights into DO dynamics in these extreme polar environments.
16S rRNA gene sequence accessions from discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (2013-2023, ongoing)
An important component of the McMurdo Dry Valleys Long Term Ecological Research (MCM LTER) project is monitoring spatial and temporal patterns in the biological composition of perennially ice-covered lakes in Antarctica’s McMurdo Dry Valleys. This data package contributes to this core research area by providing a curated table linking 16S rRNA gene sequence accession numbers archived in NCBI to MCM LTER limnological sampling campaigns conducted at specific depths along the water column of Lakes Fryxell, Hoare, Bonney, and Miers. These data enable integration of microbial community data with co-collected biological, chemical, and physical measurements.
Chlorophyll and phaeopigments from water column samples, collected at selected depths at Palmer Station Antarctica, during the Palmer LTER field seasons, 1991-2025.
Phytoplankton chlorophyll sampling was led by Smith from the 1991-1992 season through the 2001-2002 season, and then by Vernet from the 2002-2003 season through the 2006-2007 season. Schofield is the third, and current lead, beginning in the 2008-2009 season. Methods have been kept consistent as much as possible over the full time series and different Principal Investigators. Chlorophyll a (Chl a) is the principal photosynthetic pigment of phytoplankton, and is used as a proxy measurement for estimating phytoplankton biomass in water samples. Chl a concentrations reflect the distribution of active phytoplankton spatially and with depth in the water column and their changes over time. Phaeopigments are non-photosynthetic pigments that are degradation products of phytoplankton chlorophylls which form during and after phytoplankton blooms. Water samples are collected throughout the water column at stations within the Palmer LTER region (primarily B and E, to 50m and 65m respectively). Beginning in the 2020-2021 season, Station B is no longer sampled. Chlorophyll and phaeopigment concentrations are determined by filtration, extraction, and fluorometric detection of samples. The primary source of error for phaeopigment measurement is Chlorophyll b. If high amounts of Chlorophyll b are present in the sample, phaeopigments may be overestimated. There was no field season in 2021-2022.
Water column primary production from inorganic carbon uptake for 24h at simulated in situ light levels in deck incubators, collected at Palmer Station Antarctica during Palmer LTER field seasons, 1994-2025.
Primary Production experiments were led by Vernet from the 1994-1995 season through the 2006-2007 season. Schofield is the current lead, beginning in the 2009-2010 season. Methods have been kept consistent as much as possible over the full time series and different Principal Investigators. Primary production is the uptake of inorganic carbon and assimilation of it into organic matter by phytoplankton. Primary production rates, expressed as mgC per m3 per day were measured by the uptake of radioactive (14C) sodium bicarbonate. Water samples are collected throughout the water column at stations within the Palmer LTER region (primarily B and E, to 50m and 65m respectively). Beginning in the 2020-2021 season, Station B is no longer sampled. Water is put into borosilicate bottles, inoculated with 1 uCi of NaH14CO3 per bottle, and incubated in an outdoor deck incubator. The incubator is plumbed to the Palmer Station sea water system to maintain ambient seawater temperature and bottles are screened to in situ light levels. The uptake of 14C-bicarbonate by the phytoplankton was measured in a scintillation counter after a 24-hour incubation period. Primary production experiments were not conducted during the 2020-2021 nor 2023-2024 field seasons. There was no field season in 2021-2022.
Chlorophyll and phaeopigments from water column samples, collected at selected depths aboard Palmer LTER annual cruises off the coast of the Western Antarctic Peninsula, 1991-2024.
Phytoplankton chlorophyll sampling was led by Smith from 1991-2002, and then by Vernet from 2003-2008. Schofield is the third, and current lead, beginning in 2009. Methods have been kept consistent as much as possible over the full time series and different Principal Investigators. Chlorophyll a (Chl a) is the principal photosynthetic pigment of phytoplankton, and is used as a proxy measurement for estimating phytoplankton biomass in water samples. Chl a concentrations reflect the distribution of active phytoplankton spatially and with depth in the water column and their changes over time. Phaeopigments are non-photosynthetic pigments that are degradation products of phytoplankton chlorophylls which form during and after phytoplankton blooms. Water samples are collected throughout the water column along the Western Antarctic Peninsula at regular LTER grid stations where CTD casts are preformed and in surface waters at underway stations, where CTD casts are not done, using the ship's flow-through seawater system. Chlorophyll and phaeopigment concentrations are determined by filtration, extraction, and fluorometric detection of samples. The primary source of error for phaeopigment measurement is Chlorophyll b. If high amounts of Chlorophyll b are present in the sample, phaeopigments may be overestimated.
Skin-blubber biopsy samples and associated demographic data collected from cetaceans encountered along the Western Antarctic Peninsula (WAP), 2010 – 2024
Baleen whale populations in the Southern Ocean are recovering after intense commercial whaling in the 20th century. Along the Western Antarctic Peninsula (WAP), this recovery is occurring in one of the planet's most rapidly changing marine ecosystems. Understanding how climate-driven changes influence the population dynamics of whales in this region is critical for understanding what conservation and management actions must be prioritized to maintain the structure and function of this marine ecosystem. To begin understanding the dynamics of whale recovery under continued environmental change, we need to study these whales' demography and population dynamics. As part of our annual sampling surveys for cetaceans along the WAP through the PAL LTER program, we actively collect remote non-lethal skin-blubber biopsy samples and have developed one of the most extensive tissue archives in the Southern Ocean. With these samples, we conduct a series of demographic and physiological measurements. Using the skin portion of the biopsy sample, we isolate nuclear and mitochondrial DNA (mtDNA) to develop a DNA profile for each sample, including genetic sex, a microsatellite genotype, and a mtDNA haplotype. These profiles are used to compare sex ratios of the population, determine individual recaptures through genotype analysis, and better understand population mixing. Using the blubber portion of the biopsy sample, we isolate endocrine markers (e.g., progesterone and cortisol) to monitor population pregnancy rates and stress levels. This data represents some of the first non-lethal quantitative observations of the demography and population dynamics of recovering whale populations in the Antarctic and provides a critical reference point for future work as the Antarctic climate continues to change and populations continue to recover from whaling.
Larval euphausiids collected using a 1 x 1 m square frame net with 333-μm mesh aboard Palmer LTER annual cruises off the coast of the Western Antarctic Peninsula, 1993-2013
Euphausiids (krill) are abundant along the Western Antarctic Peninsula where they have important impacts on the marine ecosystem and biogeochemical cycling. Euphausiids develop through a series of morphologically distinct larval stages within the first year of their life cycle. The calyptopis stages are followed by the furcilia stages before individuals recruit to the post-larval population. Larvae collected during Janury were most likely spawned during the preceding weeks or months of Antarctic spring/summer. Euphausia superba and Thysanoessa macrura are the most abundant euphausiid species along the Western Antarctic Peninsula. Euphausia crystallorophias, Euphausia frigida, and Euphausia triacantha are present but less abundant in the region. Samples were collected with a 1 x 1 m square frame net with 333-μm mesh towed obliquely to a depth of typically 300 m. Density of total calyptopis and furcilia larvae (all species combined) was determined for a subset of samples collected on the annual Palmer LTER cruises to cover the latitudinal and cross-shelf gradients of the study region. Larval euphausiid abundance varies spatially as spawning output is not homogeneous across the region. Larval euphausiid abundance also varies year-to-year due to changes in population demographics and environmental conditions.
Mesozooplankton taxonomic density collected using a 1-m diameter ring net with 200-μm mesh at Palmer Station, Antarctica during Palmer LTER field seasons, 2017-2020
Zooplankton are a morphologically and taxonomically diverse group of animals. Many zooplankton feed on phytoplankton in surface waters and thus provide a link between primary producers and higher trophic levels. The numerical density of common mesozooplankton taxa was determined at Palmer LTER Stations B and E. Samples were collected with a 1-m diameter, 200-μm mesh ring net towed obliquely from the surface to a target depth of 50 m and back. Tows were conducted during daytime, and sampling frequency was nominally twice weekly while personnel were at Palmer Station between the months of November and March. The preserved samples were size-fractionated with nested sieves into five size classes (0.2−0.5, 0.5−1, 1−2, 2−5, and >5 mm) prior to microscopic enumeration. Data are provided for the following taxa: copepods Oithona spp., Calanoides acutus (>1 mm only), Calanus propinquus (>1 mm only), Rhincalanus gigas (>1 mm only), and small calanoids (0.2−1 mm), chaetognaths, asteroid larvae, nemertean larvae, and foraminifera (not quantified in all years). Individual size fractions were split and subsampled such that at least 100 individuals of the most abundant taxon were present. Density varies across taxa, seasonally, among years, and between sampling stations. Units of density are individuals per cubic meter.
Macrozooplankton taxonomic density collected using a 1 x 1 m square net with 700-μm mesh at Palmer Station, Antarctica during Palmer LTER field seasons, 2017-2020
Zooplankton are a morphologically and taxonomically diverse group of animals. Many zooplankton feed on phytoplankton in surface waters and thus provide a link between primary producers and higher trophic levels. The numerical density of common macrozooplankton taxa was determined at Palmer LTER Stations B and E. Samples were collected with a 1 x 1 m square, 700-μm mesh Metro net towed obliquely from the surface to a target depth of 50 m and back. Duplicate tows typically were conducted at each sampling site. Tows were conducted during daytime, and sampling frequency was nominally twice weekly while personnel were at Palmer Station between the months of November and March. The catch was sorted and counted live. Data are provided for the following taxa, which dominated biomass: the euphausiids Euphausia superba and Thysanoessa macrura, the thecosome pteropod Limacina rangii, gymnosome pteropods, the salp Salpa thompsoni, amphipods, and larval fishes. Density varies across taxa, seasonally, among years, and between sampling stations. Units of density are individuals per cubic meter.
Size-fractionated zooplankton dry weight collected using a 1-m diameter ring net with 200-μm mesh at Palmer Station, Antarctica during Palmer LTER field seasons, 2017-2020
Zooplankton are a morphologically and taxonomically diverse group of animals. Many zooplankton feed on phytoplankton in surface waters and thus provide a link between primary producers and higher trophic levels. The density of zooplankton dry weight for five size fractions was determined at Palmer LTER Stations B and E. Samples were collected with a 1-m diameter, 200-μm mesh ring net towed obliquely from the surface to a target depth of 50 m and back. Tows were conducted during daytime, and sampling frequency was nominally twice weekly while personnel were at Palmer Station between the months of November and March. One-half of the catch was size-fractionated with nested sieves into the following five size classes for biomass analysis: 0.2−0.5, 0.5−1, 1−2, 2−5, and >5 mm. Individual size fractions were concentrated on preweighed 200 μm mesh filters and frozen at −20°C until analysis. Samples were thawed, weighed to determine wet biomass, dried at 60°C for at least 24 h, and weighed again to determine dry biomass. Zooplankton density varies across size groups, seasonally, among years, and between sampling stations. Units of biomass density are milligrams dry weight per cubic meter.
Water column primary production from inorganic carbon uptake for 24h at simulated in situ (SIS) light levels in deck incubators, collected aboard Palmer LTER annual cruises off the coast of the Western Antarctic Peninsula, 1995 – 2023.
Primary Production experiments were led by Vernet from 1995-2008. Schofield is the current lead, beginning in 2009. Methods have been kept consistent as much as possible over the full time series and different Principal Investigators. Primary production is the uptake of inorganic carbon and assimilation of it into organic matter by phytoplankton. Primary production rates, expressed as mgC per m3 per day were measured by the uptake of radioactive (14C) sodium bicarbonate. Water samples are collected throughout the water column at stations along the Western Antarctica Peninsula at regular PAL-LTER grid stations. Water is put into borosilicate bottles, inoculated with 1 uCi of NaH14CO3 per bottle, and incubated in an outdoor deck incubator. The incubator is plumbed to the ship sea water system to maintain ambient seawater temperature and bottles are screened to in situ light levels. The uptake of 14C-bicarbonate by the phytoplankton was measured in a scintillation counter after a 24-hour incubation period. Data is unavailable for the LMG16-01 cruise due to measurement issues. Data is temporarily unavailable for the LMG20-01 cruise. Primary production experiments were not conducted during the 2022 (NBP21-13) nor 2024 (LMG24-01) cruises. There was no cruise in the austral summer of 2021.
Photosynthetic pigments of water column samples and analyzed with High Performance Liquid Chromatography (HPLC), collected aboard Palmer LTER annual cruises off the coast of the Western Antarctica Peninsula, 1991-2024.
Phytoplankton pigment sampling was led by Prezelin from 1991-1994, and then by Vernet from 1995-2008. Schofield is the third, and current lead, beginning in 2009. Methods have been kept consistent as much as possible over the full time series and different Principal Investigators. Phytoplankton have a suite of accessory pigments in addition to Chlorophyll a, including other Chlorophyll's (e.g. Chlorophyll b), Xanthophylls, and Carotenes. These accessory pigments can be used as chemotaxonomic markers to assess the composition and distribution of the phytoplankton community. For example, Fucoxanthin is a marker pigment of Diatoms, whereas Alloxanthin is a marker pigment of Cryptophytes. Accessory pigments also assist in photoacclimation and photoprotective processes. Water samples are collected throughout the water column along the Western Antarctic Peninsula at regular LTER grid stations where CTD casts are preformed and in surface waters at underway stations, where CTD casts are not done, using the ship's flow-through seawater system. Water samples are filtered onto GF/F filters, and filters kept frozen at -80C until analysis. HPLC analysis is completed following Wright et al (1991). Following the guidelines set by NASA SeaHARRE, we use an internal standard and replicate injects on the HPLC to track recovery and replicability of the pigment extraction methods and the HPLC. Data is unavailable for the LMG10-01 cruise due to instrumentation problems and for the LMG12-01 cruise due to a freezer failure which resulted in the loss of samples. There is no data for 2021 because there was no LTER cruise.
Dissolved inorganic carbon and alkalinity of discrete water column samples, collected aboard Palmer LTER annual cruises of the Western Antarctic Peninsula, 1993 - 2019.
Dissolved inorganic carbon (DIC or total CO2 – TCO2) and total alkalinity (TALK) are two of the four parameters defining the carbonate system in seawater. DIC is composed of dissolved CO2 gas, which dissociates into carbonate, 〖CO〗_3^(2-), and bicarbonate, 〖HCO〗_3^- in seawater. About 90% of the DIC is in the form of bicarbonate, ~10% is carbonate, and ~1% is CO2. The dissociation of CO2 dissolved in seawater into carbonate and bicarbonate gives seawater its great capacity to absorb CO2 from the atmosphere. Alkalinity (also known as “buffer capacity”) is a measure of the capacity of water to neutralize acids. Alkalinity is a complex product of the concentrations of (in decreasing order of importance) the DIC components, borate, hydroxide, phosphate, silicate and dissolved ammonium. Ocean biology regulates the alkalinity through the uptake and release of the DIC and the macronutrients N, P and Si. We measure surface DIC and ALK to understand the exchange of CO2 across the air-sea interface in our study area. With DIC and dissolved CO2, we can also derive estimates of ocean pH and thus monitor the extent and evolution of ocean acidification. Analytical methods and QC are presented under the Methods and Protocols tab.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.