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808 results for “dogs”
Data and code for: Dog lifespans and the evolution of ageing
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Does prey scarcity increase the risk of wolf attacks on domestic dogs?
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Data from: Balancing act: Persistence of the red fox in the dog-dominated landscapes of the trans-Himalaya
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Livestock guardian dogs establish a landscape of fear for wild predators: implications for the role of guardian dogs in reducing human-wildlife conflict and supporting biodiversity conservation
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Attitudes Toward and Impacts of Free-roaming Dogs in Madagascar
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The influence of domestic dogs on the spatial and temporal distribution of tayra
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Data from: Genetic diversity and population structure of the Taigan dog breed
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Genomic analysis reveals close genetic similarity between ESBL-producing E. coli isolates from humans and dogs, suggesting potential for inter-species transmission
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Pino Gate Prairie Dog Study at the Sevilleta National Wildlife Refuge, New Mexico: Mound-Scale Lizard Data (2000-2002)
Keystone species have large impacts on community and ecosystem properties, and create important ecological interactions with other species. Prairie dogs (Cynomys spp.) and banner-tailed kangaroo rats (Dipodomys spectabilis) are considered keystone species of grassland ecosystems, and create a mosaic of unique habitats on the landscape. These habitats are known to attract a number of animal species, but little is known about how they affect lizard communities. Our research evaluated the keystone roles of prairie dogs and kangaroo rats on lizards at the Sevilleta National Wildlife Refuge in central New Mexico, USA. We evaluated the impacts of these rodents on lizard communities in areas where prairie dogs and kangaroo rats co-occurred compared to areas where each rodent species occurred alone. Our results demonstrate that prairie dogs and kangaroo rats have keystone-level impacts on these lizard communities. Their burrow systems provided important habitats for multiple lizard species, especially the lesser earless lizard (Holbrookia maculata). At the landscape-scale, the total number of lizards was two-times greater on the where both prairie dogs and banner-tailed kangaroo rats co-occurred than where only kangaroo rats occurred.
Gunnison's Prairie Dog Relocation Project: Vegetation Cover Data from the Sevilleta National Wildife Refuge, New Mexico (2005-2013)
Prairie dogs are keystone species that impact both animals and plants in grassland habitats. They are a food resource for secondary consumers such as badgers, foxes, and raptors. Also, the mounds that they construct are home to many arthropod and reptile species that otherwise might not survive in grasslands. Both Gunnison’s and black-tailed prairie dogs can increase the number of plant species in grasslands and landscape heterogeneity with their ecosystem engineering that creates disturbed patches on the landscape. Gunnison’s prairie dogs, which were native herbivores at the Sevilleta National Wildlife Refuge (NWR) before their populations disappeared, were reintroduced at the Sevilleta NWR in 1997, 2005, and 2008. In 1998, a Gunnison’s prairie dog colony naturally established along the northern border on the east side of the Refuge. The naturally occurring colony and the colony that was reintroduced in 1997 have since then severely declined or gone locally extinct. Still, with the removal of cattle from the Sevilleta in 1973, the reintroductions of Gunnison’s prairie dogs in 2005 and 2008 provides an interesting opportunity to study how a native keystone herbivore affects a grassland habitat without the pressures and competition from livestock.
SGS-LTER Graduate Student Research: Cattle use of prairie dog towns on the shortgrass steppe of Colorado
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83512. We investigated the use of prairie dog towns by cattle (Bos taurus) on the shortgrass steppe of northeastern Colorado by conducting surveys of cattle and vegetation from June to August 1999. Cattle presence and behavior were recorded 3 times a week during driving surveys of 15 black-tailed prairie dog (Cynomys ludovicianus) towns. A subset of 3 pastures with prairie dog towns was intensively surveyed twice weekly wherein the habitat and activity of a randomly chosen focal animal was recorded every 6 minutes for 3.5 hours. Bite and step counts of other individuals were recorded for 5-minute intervals. Vegetation height and cover data were collected monthly on each of 6 habitats. Results from driving surveys and intensively surveyed pastures were similar; cattle neither significantly preferred nor avoided prairie dog towns. Bare ground cover on prairie dog towns did not significantly differ from most other habitats, but vegetation on prairie dog towns was significantly shorter on (mean = 6.7 cm) than that off (mean = 11.9 cm) prairie dog towns. Nevertheless, foraging observations indicated that there was no significant difference between cattle foraging rates on swales (70.9
SGS-LTER Graduate Student Research: Cattle use of prairie dog towns on the shortgrass steppe of Colorado
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83512. We investigated the use of prairie dog towns by cattle (Bos taurus) on the shortgrass steppe of northeastern Colorado by conducting surveys of cattle and vegetation from June to August 1999. Cattle presence and behavior were recorded 3 times a week during driving surveys of 15 black-tailed prairie dog (Cynomys ludovicianus) towns. A subset of 3 pastures with prairie dog towns was intensively surveyed twice weekly wherein the habitat and activity of a randomly chosen focal animal was recorded every 6 minutes for 3.5 hours. Bite and step counts of other individuals were recorded for 5-minute intervals. Vegetation height and cover data were collected monthly on each of 6 habitats. Results from driving surveys and intensively surveyed pastures were similar; cattle neither significantly preferred nor avoided prairie dog towns. Bare ground cover on prairie dog towns did not significantly differ from most other habitats, but vegetation on prairie dog towns was significantly shorter on (mean = 6.7 cm) than that off (mean = 11.9 cm) prairie dog towns. Nevertheless, foraging observations indicated that there was no significant difference between cattle foraging rates on swales (70.9
Data from: Social facilitation can impact the responses of free-ranging dogs (Canis lupus familiaris) towards physical cognitive tasks
<p><span>Dogs are known to persist less in problem-solving tasks independently. While most of the studies so far have reported results based on experiments in pet dogs, conclusive evidence from free-ranging subpopulations is lacking. Free-ranging dogs are primarily scavengers and require problem-solving abilities to survive. We provided dogs with a familiar or an unfamiliar task in the presence of conspecifics. Both the tasks provided a single food-reward upon solving. We coded success, latency, and the duration of active engagement of the dogs in this study. We compared them with an earlier published dataset where individual dogs were tested in identical experimental set-ups. Our findings show that dogs have higher success rates in both the familiar and unfamiliar tasks when tested in the presence of conspecifics than when alone, suggesting a role of social facilitation. Furthermore, the presence of conspecifics facilitated dogs to approach faster and engage longer in the unfamiliar task than when tested alone. We provide the first evidence that social facilitation may play a crucial role in free-ranging dogs, especially in the context of problem-solving. </span></p>
Data from: Standardization and validation of a panel of cross-species microsatellites to individually identify the Asiatic wild dog (Cuon alpinus)
The Asiatic wild dog or dhole (Cuon alpinus) is a highly elusive, monophyletic, forest dwelling, social canid distributed across south and Southeast Asia. Severe pressures from habitat loss, prey depletion, disease, human persecution and interspecific competition resulted in global population decline in dholes. Despite a declining population trend, detailed information on population size, ecology, demography and genetics is lacking. Generating reliable information at landscape level for dholes is challenging due to their secretive behaviour and monomorphic physical features. Recent advances in non-invasive DNA-based tools can be used to monitor populations and individuals across large landscapes. In this paper, we describe standardization and validation of faecal DNA-based methods for individual identification of dholes. We tested this method on 249 field-collected dhole faeces from five protected areas of the central Indian landscape in the state of Maharashtra, India. Results We tested a total of 18 cross-species markers and developed a panel of 12 markers for unambiguous individual identification of dholes. This marker panel identified 101 unique individuals from faecal samples collected across our pilot field study area. These loci showed varied level of amplification success (57-88%), polymorphism (3-9 alleles), heterozygosity (0.23-0.63) and produced a cumulative misidentification rate or PID(unbiased) and PID(sibs) value of 4.7x10-10 and 1.5x10-4, respectively, indicating a high statistical power in individual discrimination from poor quality samples. Conclusion Our results demonstrated that the selected panel of 12 microsatellite loci can conclusively identify dholes from poor quality, non-invasive biological samples and help in exploring various population parameters. This genetic approach would be useful in dhole population estimation across its range and will help in assessing population trends and other genetic parameters for this elusive, social carnivore.
Meniscus Matrix Remodeling in Response to Compressive Forces in Dogs
<p>Joint motion and postnatal stress of weight bearing are the principal factors that determine the phenotypical and architectural changes that characterize the maturation process of the meniscus. In this study, the effect of compressive forces on the meniscus will be evaluated in a litter of 12 Dobermann Pinschers, of approximately 2 months of age, euthanized as affected by the quadriceps contracture muscle syndrome of a single limb focusing on extracellular matrix remodeling and cell-extracellular matrix interaction (i.e., meniscal cells maturation, collagen fibers typology and arrangement). The affected limbs were considered as models of continuous compression while the physiologic loaded limbs were considered as controls. The results of this study suggest that a compressive continuous force, applied to the native meniscal cells, triggers an early maturation of the cellular phenotype, at the expense of the proper organization of collagen fibers. Nevertheless, an application of a compressive force could be useful in the engineering process of meniscal tissue in order to induce a faster achievement of the mature cellular phenotype and, consequently, the earlier production of the fundamental extracellular matrix (ECM), in order to improve cellular viability and adhesion of the cells within a hypothetical synthetic scaffold.</p>
Data From: Characterizing patterns of genomic variation in the threatened Utah prairie dog: implications for conservation and management
<p>Utah prairie dogs (<i>Cynomys parvidens</i>) are federally threatened due to eradication campaigns, habitat destruction, and outbreaks of plague. Today, Utah prairie dogs exist in small, isolated populations, making them less demographically stable and more susceptible to erosion of genetic variation by genetic drift. We characterized patterns of genetic structure at neutral and putatively adaptive loci in order to evaluate the relative effects of genetic drift and local adaptation on population divergence. We sampled individuals across the Utah prairie dog species range and generated 2,955 single nucleotide polymorphisms (SNPs) using double digest restriction site associated DNA sequencing (ddRAD). Genetic diversity was lower in low elevation sites compared to high elevation sites. Population divergence was high among sites and followed an isolation-by-distance (IBD) model. Our results indicate that genetic drift plays a substantial role in the population divergence of the Utah prairie dog, and colonies would likely benefit from translocation of individuals between recovery units, which are characterized by distinct elevations, despite the detection of environmental associations with outlier loci. By understanding the processes that shape genetic structure, better informed decisions can be made with respect to the management of threatened species to ensure that adaptation is not stymied.</p>
Detection dogs in nature conservation: a database on their worldwide deployment with a review on breeds used and their performance compared to other methods
<p>Over the last century, dogs have been increasingly used to detect rare and elusive species or traces of them. The use of wildlife detection dogs (WDD) is particularly well established in North America, Europe and Oceania, and projects deploying them have increased worldwide. However, if they are to make a significant contribution to conservation and management, their strengths, abilities, and limitations should be fully identified. We reviewed the use of WDD with particular focus on the breeds used in different countries and for various targets, as well as their overall performance compared to other methods, by developing and analysing a database of 1220 publications, including 916 scientific ones, covering 2464 individual cases - most of them (1840) scientific. With the worldwide increase in the use of WDD, associated tasks have changed and become much more diverse. Since 1930, reports exist for 62 countries and 407 animal, 42 plant, 26 fungi and 6 bacteria species. Altogether, 108 FCI-classified and 20 non-FCI-classified breeds have worked as WDD. While certain breeds have been preferred on different continents and for specific tasks and targets, they were not generally better suited for detection tasks than others. Overall, WDD usually worked more effectively than other monitoring methods. For each species group, regardless of breed, detection dogs were better than other methods in 88.71% of all cases and only worse in 0.98%. It was only for arthropods that Pinshers and Schnauzers performed worse than other breeds. For mono- and dicotyledons, detection dogs did less often outperform other methods. Although every breed can be trained as a WDD, choosing the most suitable dog for the task and target may speed up training and increase the chance of success. Albeit selection of the most appropriate WDD is important, excellent training, knowledge about the target density and suitability, and a proper study design all appeared to have the highest impact on performance. Moreover, an appropriate area, habitat and weather are crucial for detection dog work. When these factors are taken into consideration, WDD can be an outstanding monitoring method.</p>
Genotypes of Italian free-ranging dogs
<p>Domestication has greatly changed the social and reproductive behavior of dogs relative to that of wild members of the genus <i>Canis,</i> which typically exhibit social monogamy and extended parental care. Unlike a typical grey wolf pack that consists of a single breeding pair and their offspring from multiple seasons, a group of free-ranging dogs (FRDs) can include multiple breeding individuals of both sexes. To understand the consequences of this shift in <span>reproductive behavior, </span>we reconstructed the genetic pedigree of an FRD population<span> and assessed the </span>kinship patterns in social groups, based on genome-wide SNP genotypes. Consistent with behavioral observations, the mating system of the study population was characterized by polygynandry. Instead of the discreet family units observed in wolves, FRDs were linked by a network of kinship relationships that spread across packs. However, we also observed reproduction of the same male-female pairs in multiple seasons, retention of adult offspring in natal packs and dispersal between neighboring packs – patterns in common with wolves. Although monogamy is the predominant mating system in wolves, polygyny and polyandry are occasionally observed in response to increased food availability. Thus, polygynandry of domestic dogs was likely influenced by the shift in ecological niche from an apex predator to a human commensal.</p>
An early dog from Southeast Alaska supports a coastal route for the first dog migration into the Americas
<p>The oldest confirmed remains of domestic dogs in North America are from mid-continent archeological sites dated ~9,900 calibrated years before present (cal BP). Although this date suggests that dogs may not have arrived alongside the first Native Americans, the timing and routes for the entrance of New World dogs are unclear. Here, we present a complete mitochondrial genome of a dog from Southeast Alaska, dated to 10,150 ± 260 cal BP. We compared this high-coverage genome with data from modern dog breeds, historical Arctic dogs, and American precontact dogs (PCDs) from before European arrival. Our analyses demonstrate that the ancient dog shared a common ancestor with PCDs that lived ~14,500 years ago and diverged from Siberian dogs around 16,000 years ago, coinciding with the minimum suggested date for the opening of the North Pacific coastal (NPC) route along the Cordilleran Ice Sheet and genetic evidence for the initial peopling of the Americas. This ancient Southeast Alaskan dog occupies an early branching position within the PCD clade, indicating it represents a close relative of the earliest PCDs that were brought alongside people migrating from eastern Beringia southward along the NPC to the rest of the Americas. The stable isotope δ13C value of this early dog indicates a marine diet, different from the younger mid-continent PCDs' terrestrial diet. Although PCDs were largely replaced by modern European dog breeds, our results indicate that their population decline started ~2,000 years BP, coinciding with the expansion of Inuit peoples, who are associated with traditional sled-dog culture. Our findings suggest that dogs formed part of the initial human habitation of the New World, and provide insights into their replacement by both Arctic and European lineages.</p>
Data from: Gene flow between wolf and shepherd dog populations in Georgia (Caucasus)
We studied the distribution of the mitochondrial DNA haplotypes and microsatellite genotypes at eight loci in 102 grey wolves, 57 livestock guarding dogs, and 9 mongrel dogs from Georgia (Caucasus). Most of the studied dogs had mitochondrial haplotypes clustered with presumably East Asian dog lineages, and most of the studied wolves had the haplotypes clustered with European wolves, but 20% of wolves and 37% of dogs shared the same mitochondrial haplotypes. Bayesian inference with STRUCTURE software suggested that over 13% of the studied wolves had detectable dog ancestry and over 10% of the dogs had detectable wolf ancestry. 2-3% of the sampled wolves and dogs were identified, with a high probability, as first generation hybrids. These results were supported by the relatedness analysis which showed that 10% of wolves and 20% of dogs had closest relatives from an opposite group. The results of the study suggest that wolf-dog hybridization is a common event in the areas where large livestock guarding dogs are held in a traditional way, and that gene flow between dogs and grey wolves was an important force influencing gene pool of dogs for millennia since early domestication events. This process may have been terminated (1) in areas outside the natural range of grey wolves and (2) since very recent time, when humans started to more tightly control contacts of purebred dogs.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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