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410
datasets available to search
ShareScore release 0.9.0
Dataset results
410 results for “eukaryotic”
Convergent evolution of peptide-based quorum sensing required for virulence in a eukaryotic pathogen
GEO Series GSE73203. Cryptococcus neoformans. 47 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Transcriptome Wide Annotation of Eukaryotic RNase III Reactivity and Degradation Signals [Expression 1]
GEO Series GSE57390. Saccharomyces cerevisiae. 3 samples. Type: Expression profiling by genome tiling array.
The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome
GEO Series GSE13622. Homo sapiens; Mus musculus; synthetic construct; Saccharomyces cerevisiae. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by array.
Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes
GEO Series GSE246134. Escherichia coli; Spodoptera frugiperda. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Mapping the Landscape of a Eukaryotic Degronome
GEO Series GSE72529. Saccharomyces cerevisiae. 18 samples. Type: Other.
XCT is a novel regulator of chromatin functionally conserved across eukaryotes
GEO Series GSE67813. Arabidopsis thaliana. 18 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus
GEO Series GSE217022. Saccharomyces cerevisiae. 141 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Transcriptional landscape of the cell cycle in a model thermoacidophilic archaeon reveals similarities to eukaryotes
GEO Series GSE296035. Saccharolobus islandicus. 45 samples. Type: Expression profiling by high throughput sequencing.
Translocated Legionella pneumophila small RNAs mimic eukaryotic miRNAs to dampen the host immune response [THP-1]
GEO Series GSE190376. Legionella pneumophila; Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Non-canonical base modifications of bacterial origin in a eukaryotic genome [MeDIP-seq]
GEO Series GSE140050. Adineta vaga. 4 samples. Type: Methylation profiling by high throughput sequencing.
DNA is Methylated on N4-Cytosine in Eukaryotes
GEO Series GSE86993. Caenorhabditis elegans. 1 samples. Type: Methylation profiling by high throughput sequencing.
Eukaryote-Specific Insertion Elements Control Human ARGONAUTE Slicer Activity
GEO Series GSE48076. Trichoplusia ni. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
NADcapPro Seq and CircNAD –Methods for Accurate Profiling of NAD and Non-Canonical RNA Caps in Eukaryotes
GEO Series GSE217259. Saccharomyces cerevisiae. 20 samples. Type: Expression profiling by high throughput sequencing.
Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the eukaryotic steady state transcriptome
GEO Series GSE41432. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Non-canonical base modifications of bacterial origin in a eukaryotic genome [ChIP-seq]
GEO Series GSE140049. Adineta vaga. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus [ChIP-Seq]
GEO Series GSE217016. Saccharomyces cerevisiae. 54 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
GEO Series GSE53348. synthetic construct. 2064 samples. Type: Other.
Coupled nitrate and phosphate availability facilitated the expansion of eukaryotic life at ca. 1.56 Ga
<p>The file includes supplementary data table S1-S3 for the paper titled "Coupled nitrate and phosphate availability facilitated the expansion of eukaryotic life at ca. 1.56 Ga" submitted to 'Journal of Geophysical Research - Biogeosciences'.</p>
Data from: Short term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes
The short-term variation in the community structure of freshwater small eukaryotes (0.2-5 μm) was investigated in a mesotrophic lake every 2-3 days over one summer by coupling three molecular methods: 454 amplicon pyrosequencing, qPCR and TSA-FISH. The pyrosequencing approach unveiled a much more extensive small-eukaryotic diversity (991 OTUs) than has been described previously. The vast majority of the diversity described was represented by rare OTUs (≤ 0.01% of reads) belonging primarily to Cryptomycota, Dikarya and photosynthetic organisms, which were never detected as abundant in any of the samples. The small eukaryote community was characterized by a continual and important reassembly. These rearrangements involved the 20 "core taxa" (≥ 1% of reads), and, were essentially due to a handful of OTUs that were detected in intermediate abundance (0.01-1% of reads) and sporadically in dominant taxa. Putative bacterivorous (Ciliophora and Cercozoa) as well as parasitic and saprotrophic taxa (Perkinsozoa and Cryptomycota) were involved in these changes of diversity. A putative infection of microalgae by a lacustrine perkinsozoan was also reported for the first time in this study. Open questions regarding both the patterns that govern the rapid small eukaryote reassemblies and the possible biogeography of these organisms arise from this study.
Data from: Microbial eukaryotes have adapted to hypoxia by horizontal acquisitions of a gene involved in rhodoquinone biosynthesis
Under hypoxic conditions, some organisms use an electron transport chain consisting of only complex I and II (CII) to generate the proton gradient essential for ATP production. In these cases, CII functions as a fumarate reductase that accepts electrons from a low electron potential quinol, rhodoquinol (RQ). To clarify the origins of RQ-mediated fumarate reduction in eukaryotes, we investigated the origin and function of rqua, a gene encoding an RQ biosynthetic enzyme. Rqua is very patchily distributed across eukaryotes and bacteria adapted to hypoxia. Phylogenetic analyses suggest lateral gene transfer (LGT) of rqua from bacteria to eukaryotes occurred at least twice and the gene was transferred multiple times amongst protists. We demonstrate that RQUA functions in the mitochondrion-related organelles of the anaerobic protist Pygsuia and is correlated with the presence of RQ. These analyses reveal the role of gene transfer in the evolutionary remodeling of mitochondria in adaptation to hypoxia.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.