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330
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ShareScore release 0.7.1
Dataset results
330 results for “symbiosis”
Endoderm- vs ectoderm-specific expression of symbiosis genes in the snakelocks sea anemone
GEO Series GSE22361. Anemonia viridis. 8 samples. Type: Expression profiling by array.
A roadmap of cell-type specific gene expression during late stages of the arbuscular mycorrhiza symbiosis
GEO Series GSE42747. Medicago sativa; Medicago truncatula; Sinorhizobium meliloti. 9 samples. Type: Expression profiling by array.
Impact of modeled microgravity stress on innate immunity in a beneficial animal-microbe symbiosis
GEO Series GSE247559. Euprymna scolopes. 96 samples. Type: Expression profiling by array.
Stepwise evolution of root nodule symbiosis [DAP-seq]
GEO Series GSE264604. Medicago truncatula. 2 samples. Type: Other.
A roadmap of cell-type specific gene expression during early stages of the arbuscular mycorrhiza symbiosis
GEO Series GSE42746. Medicago truncatula; Medicago sativa; Sinorhizobium meliloti. 6 samples. Type: Expression profiling by array.
A roadmap of cell-type specific gene expression during sequential stages of the arbuscular mycorrhiza symbiosis
GEO Series GSE42748. Medicago sativa; Medicago truncatula; Sinorhizobium meliloti. 15 samples. Type: Expression profiling by array.
Rhizobial adaptation to hosts, a new facet in the legume root-nodule symbiosis
GEO Series GSE18884. Bradyrhizobium japonicum; Macroptilium atropurpureum; Vigna unguiculata subsp. unguiculata; Glycine max; Bradyrhizobium diazoefficiens USDA 110. 15 samples. Type: Expression profiling by array.
Transcriptome of epibiont Saccharibacteria TM7x during establishment of symbiosis on host Schaalia odontolyticus strain XH001
GEO Series GSE196744. Schaalia odontolytica; Candidatus Nanosynbacter lyticus. 30 samples. Type: Expression profiling by MPSS.
Stylophora pistillata cell atlas illuminates stony coral symbiosis, calcification and immunity
GEO Series GSE166901. Stylophora pistillata. 1 samples. Type: Expression profiling by high throughput sequencing.
Symbiosis in Anemonia viridis sea anemones
GEO Series GSE22375. Anemonia viridis. 18 samples. Type: Expression profiling by array.
Effect of microgravity on an animal-bacteria symbiosis
Spaceflight imposes numerous adaptive challenges for terrestrial life. The reduction in gravity, or microgravity, represents a novel environment that can disrupt homeostasis of many physiological processes. Additionally, it is becoming increasingly clear that an organism's microbiome is critical for host health and examining its resiliency in microgravity represents a new frontier for space biology research. In this study, we examine the impact of microgravity on the interactions between the squid Euprymna scolopes and its beneficial symbiont Vibrio fischeri, which form a highly specific binary mutualism. First, animals inoculated with V. fischeri aboard the space shuttle showed effective colonization of the host light organ, the site of the symbiosis, during spaceflight. Second, RNA-Seq analysis of squid exposed to modeled microgravity conditions exhibited extensive differential gene expression in the presence and absence of the symbiotic partner. Transcriptomic analyses revealed in the absence of the symbiont during modeled microgravity there was an enrichment of genes and pathways associated with the innate immune and oxidative stress response. The results suggest that V. fischeri may help modulate the host stress responses under modeled microgravity. This study provides a window into the adaptive responses that the host animal and its symbiont use during modeled microgravity.
The role acclimatization, adaptation, and symbiosis in the acquisition of heat tolerance in reef-building corals
GEO Series GSE176051. Acropora tenuis. 242 samples. Type: Expression profiling by high throughput sequencing.
Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis I
GEO Series GSE240098. Medicago truncatula. 7 samples. Type: Expression profiling by high throughput sequencing.
Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II
GEO Series GSE240102. Medicago truncatula. 20 samples. Type: Expression profiling by high throughput sequencing.
Gene profiling during symbiosis between the actinorhizal tree Casuarina glauca and the actinobacteria Frankia CcI3 after treatment with 1-naphtoxy acetic acid, an auxin influx inhibitor.
GEO Series GSE55582. Casuarina glauca. 4 samples. Type: Expression profiling by array.
Establishment of coral-algal symbiosis is accompanied by extensive transcriptional repression in the symbiont
GEO Series GSE143202. Cladocopium sp. C1; Cladocopium goreaui. 12 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
Transcriptome of Frankia in nitrogen-fixing root-nodule symbiosis with Datisca glomerata
GEO Series GSE61377. Frankia. 1 samples. Type: Expression profiling by high throughput sequencing.
Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis
GEO Series GSE240107. Medicago truncatula. 27 samples. Type: Expression profiling by high throughput sequencing.
Rhizophagus irregularis gene regulation in early steps of AMF-plant symbiosis
GEO Series GSE67913. Rhizophagus irregularis DAOM 181602=DAOM 197198. 30 samples. Type: Expression profiling by high throughput sequencing.
Differential analysis of host small RNAs identified conserved and new miRNAs that affect nodulation and strain selectivity in the Phaseolus vulgaris- Rhizobium etli symbiosis
GEO Series GSE155414. Phaseolus vulgaris. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.