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dryad32/100

Data from: A probable case of incipient speciation in Schizocosa wolf spiders driven by allochrony, habitat use and female mate choice

There is growing evidence that speciation can occur between populations that are not geographically isolated. The emergence of assortative mating is believed to be critical to this process, but how assortative mating arises in diverging populations is poorly understood. The wolf spider genus Schizocosa has become a model system for studying mechanisms of assortative mating. We conducted a series of experiments to identify the factors that control mate pair formation in a Schizocosa population that includes both ornamented and non-ornamented males. We show that the population also includes two previously unrecognised female phenotypes. One female phenotype mates mostly or exclusively with ornamented males, and the other mates mostly or exclusively with unornamented males. Assortative mating within these groups is maintained by differences in maturation time, microhabitat use, and female mate preference. We conclude that the population is not a single species as previously believed, but rather an incipient species pair with multiple overlapping mechanisms of reproductive isolation. The identification of a new incipient species pair in the well-studied and rapidly speciating Schizocosa clade presents new opportunities for the study of speciation without geographic isolation.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Using big data to assess prescribing patterns in Greece: the case of chronic obstructive pulmonary disease

Introduction: Chronic Obstructive Pulmonary Disease (COPD) is one of the top leading causes of death and disability, and its management is focused on reducing risk factors, relieving symptoms, and preventing exacerbations. The study aim was to describe COPD prescribing patterns in Greece by using existing health administrative data for outpatients. Methods: This is a retrospective cross-sectional study based on prescriptions collected by the largest social insurance fund, during the first and last trimester of 2012. Selection criteria were the prescription of specific active substances and a COPD diagnosis. Extracted information included active substance, strength, pharmaceutical form and number of packages prescribed, diagnosis, time of dispensing, as well as insurees' age, gender, percentage of co-payment and social security unique number. Statistical analysis included descriptive statistics and logistic regression. Results: 174,357 patients received medicines for COPD during the study period. Patients were almost equally distributed between male and female, and age above 55 years was strongly correlated with COPD. Most patients received a long-acting beta agonist plus inhaled corticosteroid combination (LABA +ICS), followed by long-acting muscarinic agonist (LAMA). 63% patients belonging in the 35-54 age received LABA+ICS. LAMA was prescribed more frequently among males and was strongly correlated with COPD. Conclusion: The study provides big data analysis of Greek COPD prescribing patterns. It highlights the need for appropriate COPD classification in primary care illustrating the role of electronic prescribing in ensuring appropriate prescribing. Moreover, it indicates possible gender differences in treatment response or disease severity, and the impact of statutory co-payments on prescribing.

opencc-zeroDec 2015View details →
dryad32/100

Data from: Using time series analysis to characterize evolutionary and plastic responses to environmental change: a case study of a shift toward earlier migration date in sockeye salmon

Environmental change can shift the phenotype of an organism through either evolutionary or nongenetic processes. Despite abundant evidence of phenotypic change in response to recent climate change, we typically lack sufficient genetic data to identify the role of evolution. We present a method of using phenotypic data to characterize the hypothesized role of natural selection and environmentally driven phenotypic shifts (plasticity). We modeled historical selection and environmental predictors of interannual variation in mean population phenotype using a multivariate state-space model framework. Through model comparisons, we assessed the extent to which an estimated selection differential explained observed variation better than environmental factors alone. We applied the method to a 60-year trend toward earlier migration in Columbia River sockeye salmon Oncorhynchus nerka, producing estimates of annual selection differentials, average realized heritability, and relative cumulative effects of selection and plasticity. We found that an evolutionary response to thermal selection was capable of explaining up to two-thirds of the phenotypic trend. Adaptive plastic responses to June river flow explain most of the remainder. This method is applicable to other populations with time series data if selection differentials are available or can be reconstructed. This method thus augments our toolbox for predicting responses to environmental change.

opencc-zeroDec 2010View details →
dryad32/100

Data from: An environmental DNA-based method for monitoring spawning activity: a case study, using the endangered Macquarie perch (Macquaria australasica)

Determining the timing and location of reproductive events is critical for efficient management of species. However, methods currently used for aquatic species are costly, time intensive, biased and often require destructive or injurious sampling. Hence, developing a non-invasive sampling method to accurately determine the timing and location of reproduction for aquatic species would be extremely valuable. We conducted an experimental and field study to determine the influence of spawning, and the mass release of spermatozoa in particular, on environmental DNA (eDNA) concentrations. Using a quantitative PCR approach we monitored changes in nuclear and mitochondrial eDNA concentrations over time. The data from the experimental study and the field survey supported our hypothesis that spawning events are characterized by higher concentrations of nuclear relative to mitochondrial eDNA. Outside of the reproductive period, we find that nuclear and mitochondrial DNA fragments are equally abundant in environmental water samples. We have shown that changes in the relative abundance of nuclear and mitochondrial eDNA can be used to monitor spawning activity of the endangered Macquarie perch. Our method is likely to be transferrable to other aquatic species and can be particularly useful to increase our understanding of the spawning biology of cryptic, rare or threatened species as well as design and evaluate environmental management actions and determine species establishment.

opencc-zeroDec 2015View details →
dryad32/100

Data from: Identifying spawning sites and other critical habitat in lotic systems using eDNA "snapshots": a case study using the sea lamprey Petromyzon marinus L.

Many aquatic species of conservation concern exist at low densities and are inherently difficult to detect or monitor using conventional methods. However, the introduction of environmental (e)DNA has recently transformed our ability to detect these species and enables effective deployment of limited conservation resources. Identifying areas for breeding, as well as the ecological distribution of a species are vital to the survival or recovery of a conservation species (i.e. critical habitat). In many species, spawning events are associated with a higher relative abundance of DNA released within an aquatic system (i.e. gametes, skin cells etc.), making this the ideal time to monitor these species using eDNA techniques. This study aims to examine whether a 'snapshot' eDNA sampling approach (i.e. samples taken at fixed points in chronological time) could reveal areas of critical habitat including spawning sites for our target species Petromyzon marinus. We utilised a species-specific qPCR assay to monitor spatial and temporal patterns in eDNA concentration within two river catchments in Ireland over three consecutive years. We found that eDNA concentration increased at the onset of observed spawning activity and patterns of concentration increased from downstream to upstream over time, suggesting dispersal into the higher reaches as the spawning season progressed. We found P. marinus to be present upstream of several potential barriers to migration, sometimes in significant numbers. Out results also show that the addition of lamprey-specific fish-pass at an 'impassable' weir, although assisting in ascent, did not have any significant impact on eDNA concentration upstream after pass had been installed. eDNA concentration was also found to be significantly correlated with both the number of fish and the number of nests encountered. The application of snapshot sampling techniques for species monitoring therefore has substantial potential for the management of low-density species in fast-moving aquatic systems.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Relationship type affects the reliability of dispersal distance estimated using pedigree inferences in partially sampled populations: a case study involving invasive American mink in Scotland

Estimating dispersal—a key parameter for population ecology and management—is notoriously difficult. The use of pedigree assignments, aided by likelihood-based software, has become popular to estimate dispersal rate and distance. However, the partial sampling of populations may produce false assignments. Further, it is unknown how the accuracy of assignment is affected by the genealogical relationships of individuals and is reflected by software-derived assignment probabilities. Inspired by a project managing invasive American mink (Neovison vison), we estimated individual dispersal distances using inferred pairwise relationships of culled individuals. Additionally, we simulated scenarios to investigate the accuracy of pairwise inferences. Estimates of dispersal distance varied greatly when derived from different inferred pairwise relationships, with mother–offspring relationship being the shortest (average = 21 km) and the most accurate. Pairs assigned as maternal half-siblings were inaccurate, with 64%–97% falsely assigned, implying that estimates for these relationships in the wild population were unreliable. The false assignment rate was unrelated to the software-derived assignment probabilities at high dispersal rates. Assignments were more accurate when the inferred parents were older and immigrants and when dispersal rates between subpopulations were low (1% and 2%). Using 30 instead of 15 loci increased pairwise reliability, but half-sibling assignments were still inaccurate (>59% falsely assigned). The most reliable approach when using inferred pairwise relationships in polygamous species would be not to use half-sibling relationship types. Our simulation approach provides guidance for the application of pedigree inferences under partial sampling and is applicable to other systems where pedigree assignments are used for ecological inference.

opencc-zeroDec 2016View details →
dryad32/100

Data from: Fencing solves human‐wildlife conflict locally but shifts problems elsewhere: a case study using functional connectivity modelling of the African elephant

1. Fencing is one of the commonest methods for mitigating human-wildlife conflicts. At the same time, fencing is considered to be of one of the most pressing emerging threats to conservation globally. Although fences act as barriers and eventually can cause population isolation and fragmentation, it is challenging to quantitatively predict the possible consequences fences have for wildlife. 2. Here, we model how fencing designed to mitigate human-elephant conflict (HEC) on the Borderlands between Kenya and Tanzania will affect functional connectivity and movement corridors for African elephants. Specifically, we (1) model functional landscape connectivity integrating natural and anthropogenic factors; (2) predict seasonal movement corridors used by elephants in non-protected areas; and (3) evaluate whether fencing in one area can potentially intensify human-wildlife conflicts elsewhere. 3. We used GPS movement and remote sensing data to develop monthly step-selection functions to model functional connectivity. For future scenarios, we used a currently ongoing fencing project designed for human-elephant conflict mitigation within the study area. We modelled movement corridors using least-cost path and circuit theory methods, evaluated their predictive power and quantified connectivity changes resulting from the planned fencing. 4. Our results suggest that fencing will not cause landscape fragmentation and will not change functional landscape connectivity dramatically. However, fencing will lead to a loss of connectivity locally and will increase the potential for HEC in new areas. We estimated that wetlands important for movement corridors will be more intensively used by the elephants, which may also cause problems of overgrazing. Seasonal analysis highlighted an increasing usage of non-protected lands in the dry season and equal importance of the pinch point wetlands for preserving overall function connectivity. 5. Synthesis and applications. Fencing is a solution to small-scale HEC problems, but will not solve the issue at a broader scale. Moreover, our results highlight that it may intensify the conflicts and overuse of habitat patches in other areas, thereby negating any conservation benefits. If fencing is employed on a broader scale, then it is imperative that corridors are integrated within the protected area network to ensure local connectivity of affected species.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Are 2D space-use analyses adapted to animals living in 3D environments? A case study on a fish shoal

Methodologies enabling the monitoring of animal movement and behavior in 3-dimensions (3D; x, y, z, the latter accounting for the vertical dimension) are becoming increasingly accessible and can be deployed on entire groups of animals inhabiting 3D habitats. When 2-dimensional (2D; x, y) space-use analyses are used on such groups, their spatial organization is represented as a planar projection of individuals' space-use. Movement on the vertical dimension is ignored and could biased ecological inference made from the spatial structure of the group. We used a digital imaging technique to track movements and feeding behavior of individual animals within a free-range aggregation of juvenile drift-feeding fish (Galaxias anomalus) in 3D and at fine spatiotemporal scales. We estimated spatiotemporal overlap of space-use and feeding territories between group-members using 2D (x, y) and 3D spatial analysis to: (1) describe the spatial structure of the group, (2) identify patterns of resource partitioning, and (3) investigate the relationship between space-use overlap and feeding behavior. We found that overlapping ratios of space-use and feeding territories were over-estimated in 2D, while 3D analysis of space-use provided evidence of spatial partitioning between group-members. We also found that, regardless of the computation used, the overlapping ratios of space-use were positively correlated with overlapping ratios of feeding territories while no effect was found on feeding activity. In conclusion, whilst 3D analysis provided valuable information on the spatial structure of a group, inferences on the ecological function of space-use can also be obtained from 2D analysis.

opencc-zeroDec 2015View details →
dryad32/100

Data from: How shrub encroachment under climate change could threaten pollination services for alpine wildflowers: a case study using the alpine skypilot, Polemonium viscosum

Under climate change, shrubs encroaching into high altitude plant communities disrupt ecosystem processes. Yet effects of encroachment on pollination mutualisms are poorly understood. Here, we probe potential fitness impacts of interference from encroaching Salix (willows) on pollination quality of the alpine skypilot, Polemonium viscosum. Overlap in flowering time of Salix and Polemonium is a precondition for interference and was surveyed in four extant and 25 historic contact zones. Pollinator sharing was ascertained from observations of willow pollen on bumble bees visiting Polemonium flowers and on Polemonium pistils. We probed fitness effects of pollinator sharing by measuring the correlation between Salix pollen contamination and seed set in naturally pollinated Polemonium. To ascertain whether Salix interference occurred during or after pollination, we compared seed set under natural pollination, conspecific pollen addition, and Salix pollen addition. In current and past contact zones Polemonium and Salix overlapped in flowering time. After accounting for variance in flowering date due to latitude, Salix and Polemonium showed similar advances in flowering under warmer summers. This trend supports the idea that sensitivity to temperature promotes reproductive synchrony in both species. Salix pollen is carried by bumble bees when visiting Polemonium flowers and accounts for up to 25% of the grains on Polemonium pistils. Salix contamination correlates with reduced seed set in nature and when applied experimentally. Postpollination processes likely mediate these deleterious effects as seed set in nature was not limited by pollen delivery. Synthesis: As willows move higher with climate change, we predict that they will drive postpollination interference, reducing the fitness benefits of pollinator visitation for Polemonium and selecting for traits that reduce pollinator sharing.

opencc-zeroDec 2016View details →
dryad32/100

Data from: Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates

Recent studies have advocated biomonitoring using DNA techniques. In this study, two high-throughput sequencing (HTS)-based methods were evaluated: amplicon metabarcoding of the cytochrome C oxidase subunit I (COI) mitochondrial gene and gene enrichment using MYbaits (targeting nine different genes including COI). The gene-enrichment method does not require PCR amplification and thus avoids biases associated with universal primers. Macroinvertebrate samples were collected from 12 New Zealand rivers. Macroinvertebrates were morphologically identified and enumerated, and their biomass determined. DNA was extracted from all macroinvertebrate samples and HTS undertaken using the illumina miseq platform. Macroinvertebrate communities were characterized from sequence data using either six genes (three of the original nine were not used) or just the COI gene in isolation. The gene-enrichment method (all genes) detected the highest number of taxa and obtained the strongest Spearman rank correlations between the number of sequence reads, abundance and biomass in 67% of the samples. Median detection rates across rare (<1% of the total abundance or biomass), moderately abundant (1–5%) and highly abundant (>5%) taxa were highest using the gene-enrichment method (all genes). Our data indicated primer biases occurred during amplicon metabarcoding with greater than 80% of sequence reads originating from one taxon in several samples. The accuracy and sensitivity of both HTS methods would be improved with more comprehensive reference sequence databases. The data from this study illustrate the challenges of using PCR amplification-based methods for biomonitoring and highlight the potential benefits of using approaches, such as gene enrichment, which circumvent the need for an initial PCR step.

opencc-zeroDec 2014View details →
dryad32/100

Data from: What have been and what can be delimited as species using molecular data under the multi-species coalescent model? A case study using Hercules beetles (Dynastes; Dynastidae)

Molecular species delimitation using the multi-species coalescent model has become common for statistically and objectively determining species limits. Empirical examples of how consistently different molecular data sets delimit the same level of divergence as species using coalescent-based methods are still lacking. I applied the method of molecular species delimitation in the Bayesian Phylogenetics and Phylogeography (BPP) program to study species delimitation in the divergence between populations and between putative species across four species of Hercules beetles. The quantity and variability of the molecular data affected species delimitation. A divergence that represented a late stage along the speciation continuum, e.g. between sympatric biological species, could be delimited by BPP by fewer and less variable loci than a recent divergence, e.g. between geographic populations. My results further indicated that the use of genomic data could even over-split geographically continuously distributed populations into species. I compared my results with those from other empirical studies and argue for the need of a thorough review of the kind of evolutionary entities, e.g. geographic populations versus morphologically distinct taxa, that have been designated as species and whether such designations are consistent among studies.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Optimising trait and source selection for explaining occurrence and abundance changes: a case study using British Butterflies

Functional traits that define the ecological role of an organism are increasingly being used to determine and predict responses to environmental change. Functional trait analyses of butterflies remain underexplored compared with other taxa, such as plants. Previous works using butterfly functional traits have not comprehensively addressed issues about the quality of trait data sets used and the relative predictive power of different trait types. We compare the consistency of trait descriptions between six widely used trait sources for the British butterfly fauna. We analysed consistency of trait sources using Fleiss's kappa and ICC. PCA was used to produce species ordinations, comparing outputs to examine which trait sets were better at explaining recent species range and abundance changes within the UK. There was a large range in congruence values for specific traits between sources. No single source can be relied upon to produce accurate trait information for British butterflies. Most trait sets are poor predictors of abundance and occurrence changes but are better at predicting current occurrence. An extensive trait set, supplementing biotope-related traits with explicit resource-based information recovers more informative ecological classifications and models than those primarily based on life-history traits or biotope descriptors. Smaller trait sets do, however, recover the specialist-generalist continuum. We conclude that analyses of distribution and abundance changes that rely on traits are highly dependent on trait source and trait type. For butterflies, traits that are based on measures of biotope occupancy should be avoided in explaining changes of abundance and distribution. Including trait information that describes their resource requirements is essential for such analyses.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Using citizen-collected wildlife sightings to predict traffic strike hotspots for threatened species: a case study on the southern cassowary

Assessing the causal factors underpinning the distribution and abundance of wildlife road-induced mortality can be challenging. This is particularly ubiquitous for rare or elusive species, because traffic strikes occur infrequently for these populations and information about localized abundance, distribution, and movements are generally lacking. Here we assessed if citizen-collected sightings data may serve as a low cost and efficient means of gathering long-term animal road-side presence and road crossing information, which could then be used to assess the causative factors and direct mitigation actions aimed at reducing wildlife traffic strike frequency. We explored this principle using two decades of traffic strike records and citizen-collected sightings of the southern cassowary Casuarius casuarius johnsonii. Roads have bisected the cassowaries' rainforest habitat and despite considerable investment into mitigation strategies for this species, road-induced mortality is considered one of the primary threatening processes affecting the population. Using a Bayesian approach and controlling for spatial autocorrelation with conditional autoregressive (CAR) models, we demonstrate that traffic strikes are primarily a density-dependent process in the southern cassowary. That is, traffic strike clusters occurred along stretches of road where cassowaries were most frequently sighted. There were, however, road stretches where traffic strike frequency was greater than predicted by the number of road-side sightings, illustrating when and where density-independent processes increased the mortality potential for a road-crossing cassowary. Synthesis and applications. This is the first time that citizen-collected sightings data have been used to systematically inform upon the abundance and distribution of wildlife traffic strike. The technique not only predicts where incidents are likely to occur but also helps us to understand the factors responsible for strike clustering. While not a replacement for systematic surveys, we highlight citizen-collected sightings data as a low-cost option when assessing contributing factors to vehicle-induced mortality. Accounting for density-dependent and independent processes will ensure the most effective allocation of resources when implementing wildlife traffic strike mitigation.

opencc-zeroDec 2015View details →
dryad32/100

Data from: Recovery of native genetic background in admixed Populations Using haplotypes, phenotypes, and pedigree information – using Cika cattle as a case breed

The aim of this study was to obtain unbiased estimates of the diversity parameters, the population history, and the degree of admixture in Cika cattle which represents the local admixed breeds at risk of extinction undergoing challenging conservation programs. Genetic analyses were performed on the genome-wide Single Nucleotide Polymorphism (SNP) Illumina Bovine SNP50 array data of 76 Cika animals and 531 animals from 14 reference populations. To obtain unbiased estimates we used short haplotypes spanning four markers instead of single SNPs to avoid an ascertainment bias of the BovineSNP50 array. Genome-wide haplotypes combined with partial pedigree and type trait classification show the potential to improve identification of purebred animals with a low degree of admixture. Phylogenetic analyses demonstrated unique genetic identity of Cika animals. Genetic distance matrix presented by rooted Neighbour-Net suggested long and broad phylogenetic connection between Cika and Pinzgauer. Unsupervised clustering performed by the admixture analysis and two-dimensional presentation of the genetic distances between individuals also suggest Cika is a distinct breed despite being similar in appearance to Pinzgauer. Animals identified as the most purebred could be used as a nucleus for a recovery of the native genetic background in the current admixed population. The results show that local well-adapted strains, which have never been intensively managed and differentiated into specific breeds, exhibit large haplotype diversity. They suggest a conservation and recovery approach that does not rely exclusively on the search for the original native genetic background but rather on the identification and removal of common introgressed haplotypes would be more powerful. Successful implementation of such an approach should be based on combining phenotype, pedigree, and genome-wide haplotype data of the breed of interest and a spectrum of reference breeds which potentially have had direct or indirect historical contribution to the genetic makeup of the breed of interest.

opencc-zeroDec 2014View details →
dryad32/100

Data from: Thelomma ocellatum, a range extension to the Yukon Territory and case study in the use of molecular data to recognize asexually reproducing crustose lichens

An unusual sterile, asexually reproducing crustose lichen was encountered during fieldwork in the Yukon Territory of Canada. Genus and family level placement of the taxon were precluded by a lack of both sexual characters and any non-sexual characters that would have suggested an unambiguous generic affiliation. Examination of mtSSU and nrITS sequence data of the taxon revealed it to be a member of the Caliciaceae, with a sister relationship to the genus Tholurna. Subsequent molecular phylogenetic analyses of mtSSU sequence data suggested conspecificity with Thelomma ocellatum, one of the few calicioid lichens that reproduce asexually via lichenized diaspores. Comparison of the material from the Yukon with reference specimens and descriptions of T. ocellatum confirmed the identification of these populations, which extend the known distribution of T. ocellatum considerably northward in North America.

opencc-zeroDec 2012View details →
dryad32/100

Data from: Are landscape attributes a useful shortcut for classifying vegetation in the tropics? A case study of La Amistad International Park

Effective vegetation classification schemes identify the processes determining species assemblages and support the management of protected areas. They can also provide a framework for ecological research. In the tropics, elevation-based classifications dominate over alternatives such as river catchments. Given the existence of floristic data for many localities, we ask how useful floristic data are for developing classification schemes in species-rich tropical landscapes and whether floristic data provide support for classification by river catchment. We analyzed the distribution of vascular plant species within 141 plots across an elevation gradient of 130 to 3200 m asl within La Amistad National Park. We tested the hypothesis that river catchment, combined with elevation, explains much of the variation in species composition. We found that annual mean temperature, elevation, and river catchment variables best explained the variation within local species communities. However, only plots in high-elevation oak forest and Páramo were distinct from those in low- and mid-elevation zones. Beta diversity did not significantly differ in plots grouped by elevation zones, except for low-elevation forest, although it did differ between river catchments. None of the analyses identified discrete vegetation assemblages within mid-elevation (700–2600 m asl) plots. Our analysis supports the hypothesis that river catchment can be an alternative means for classifying tropical forest assemblages in conservation settings.

opencc-zeroDec 2016View details →
zenodo32/100

FIGURE 11 in Rediscovery of Sagittalarva inornata n. gen., n. comb. (Gilbert, 1890) (Perciformes: Labridae), a long-lost deepwater fish from the eastern Pacific Ocean: a case study of a forensic approach to taxonomy using DNA barcoding

FIGURE 11. Julidine portion of the phylogenetic tree from Westneat and Alfaro (2005), with the newly-available sequences for Sagittalarva inornata added, based on a maximum-likelihood model utilizing nuclear genes Rag2 and Tmo4c4 and mitochondrial genes 12s and 16s (log likelihood = -47392.14). S. inornata is highlighted in red, the New World Halichoeres clade in purple, a large Indo-Pacific Halichoeres clade in yellow, smaller Indo-Pacific clades of Halichoeres in orange and green, Pseudojuloides in pink, the "julidinoid" Pseudolabrines in blue and Cheilio and other non-julidines below. The scale bar at upper left represents 0.02 substitutions per site. The sequences for Rag2, Tmo4c4, 12s, and 16s for S. inornata correspond to GenBank accessions JX684103–6; the accession numbers for the remaining sequences are listed in Table 1 of Westneat and Alfaro (2005).

opennotspecifiedDec 2013View details →
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FIGURE 9 in Rediscovery of Sagittalarva inornata n. gen., n. comb. (Gilbert, 1890) (Perciformes: Labridae), a long-lost deepwater fish from the eastern Pacific Ocean: a case study of a forensic approach to taxonomy using DNA barcoding

FIGURE 9. Photograph and radiograph of the holotype of Sagittalarva inornata, 73 mm SL, USNM 44273, courtesy Sandra Raredon, USNM.

opennotspecifiedDec 2013View details →
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FIGURE 8 in Rediscovery of Sagittalarva inornata n. gen., n. comb. (Gilbert, 1890) (Perciformes: Labridae), a long-lost deepwater fish from the eastern Pacific Ocean: a case study of a forensic approach to taxonomy using DNA barcoding

FIGURE 8. Underwater photograph of juvenile S. inornata in Baja California from videos by Octavio Aburto-Oropeza and Brad Erisman.

opennotspecifiedDec 2013View details →
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FIGURE 1 in Rediscovery of Sagittalarva inornata n. gen., n. comb. (Gilbert, 1890) (Perciformes: Labridae), a long-lost deepwater fish from the eastern Pacific Ocean: a case study of a forensic approach to taxonomy using DNA barcoding

FIGURE 1. Radiograph of the head of the holotype of Sagittalarva inornata (USNM 44273) showing a single pair of enlarged canines at the front of the upper and lower jaws followed by rows of caniniform to coniform teeth, courtesy Sandra Raredon, USNM.

opennotspecifiedDec 2013View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record