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359
datasets available to search
ShareScore release 0.7.1
Dataset results
359 results for “Drosophila species”
Simple and Complex Centromeric Satellites in Drosophila Sibling Species
GEO Series GSE105100. Drosophila melanogaster; Drosophila simulans. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA-seq of sexed adult tissues/body parts from eight Drosophila species
GEO Series GSE99574. Drosophila ananassae; Drosophila persimilis; Drosophila yakuba; synthetic construct; Drosophila melanogaster; Drosophila pseudoobscura; Drosophila mojavensis; Drosophila virilis; Drosophila willistoni. 856 samples. Type: Expression profiling by high throughput sequencing.
Binding site turnover produces pervasive quantitative changes in TF binding between closely related Drosophila species
GEO Series GSE20369. Drosophila melanogaster; Drosophila yakuba. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide binding patterns of group B Sox proteins in four Drosophila species
GEO Series GSE63333. Drosophila melanogaster; Drosophila pseudoobscura; Drosophila simulans; Drosophila yakuba. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
roX ChIRP-seq in four Drosophila species
GEO Series GSE69208. Drosophila melanogaster; Drosophila busckii; Drosophila virilis; Drosophila willistoni. 35 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cross-species comparative analysis using single-cell RNA-sequencing data of Drosophila hemocytes, zebrafish, mouse and human immune cells
GEO Series GSE184781. Drosophila melanogaster. 3 samples. Type: Expression profiling by high throughput sequencing.
Data from: Fine-scale genetic analysis of species-specific female preference in Drosophila simulans
Behavioral differences are thought to be the first components to contribute to species isolation, yet the precise genetic basis of behavioral isolation remains poorly understood. Here, we used a combination of behavior assays and genetic mapping to provide the first refined map locating candidate genes for interspecific female preference isolating Drosophila simulans from D. melanogaster. First, we tested whether two genes identified as affecting D. melanogaster female intraspecific mate choice also affect interspecific mate choice; neither of these genes was found to contribute to species-specific female preference. Next, we used deficiency mapping to locate genes on the right arm of the third chromosome for species-specific female preference and identified five small significant regions that contain candidate genes contributing to behavioral isolation. All five regions were located in areas that would have low interspecific recombination, which mirrors the results of other behavioral isolation studies that used quantitative trait locus (QTL) mapping, but without the potential concern of bias towards regions of low recombination that QTL mapping may have. Since this model system may be refined to the individual gene level using the same methodology, this initial map we provide may potentially serve as a ready template for the identification and characterization of the first behavioral isolation genes.
Data from: Evolution and plasticity of thermal performance: An analysis of variation in thermal tolerance and fitness in 22 Drosophila species
The thermal biology of ectotherms is often used to infer species' responses to changes in temperature. It is often proposed that temperate species are more cold-tolerant, less heat-tolerant, more plastic, have broader thermal performance curves (TPCs), and lower optimal temperatures, when compared to tropical species; however, relatively little empirical work has investigated these expectations. Here we measure thermal tolerance limits and thermal performance of the fitness components viability, developmental speed, and fecundity at seven temperatures in 22 species of Drosophila reared at a common temperature. For 10 of these species, we also measured thermal tolerance and thermal performance following developmental acclimation to three additional temperatures. Using these data, we test several fundamental hypotheses about the evolution and plasticity of heat and cold resistance and thermal performance. We find that cold (and to a lesser degree heat) tolerance varied between the species in a predictable pattern. This confirms the marked effect of evolutionary adaptation and acclimation on thermal tolerance. However, contrary to expectation, find that the breadth of thermal performance in fitness traits were similar in temperate, widespread and tropical species and we also find that the plasticity of TPCs is constrained. These data support the idea that thermal tolerance limits have evolved in response to extreme environmental conditions that limits species persistence whereas the temperature range for optimal thermal performance is likely under selection by the temperatures that prevail during the more benign seasons. Further, it calls to question the utility of TPCs in inferring ecological adaptation. We conclude that the thermal performance of fitness traits in Drosophila species are temporally and spatially stable and that thermal tolerance varies considerably across latitudes.
Small RNAs from 11 Drosophila species
GEO Series GSE98013. Drosophila pseudoobscura; Drosophila grimshawi; Drosophila sechellia; Drosophila simulans; Drosophila yakuba; Drosophila mojavensis; Drosophila persimilis; Drosophila willistoni; Drosophila ananassae; Drosophila erecta; Drosophila virilis. 56 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Temporal dynamics of gene expression during metamorphosis in two distant Drosophila species
GEO Series GSE269951. Drosophila melanogaster; Drosophila virilis. 60 samples. Type: Expression profiling by high throughput sequencing.
Data from: Evolution and plasticity of thermal performance: An analysis of variation in thermal tolerance and fitness in 22 Drosophila species
Open the record for dataset details and reuse information.
Data from: Fine-scale genetic analysis of species-specific female preference in Drosophila simulans
Open the record for dataset details and reuse information.
Small RNAs from four Drosophila melanogaster-subgroup species
GEO Series GSE56244. Drosophila yakuba; Drosophila erecta; Drosophila sechellia; Drosophila simulans. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Genomics analysis of hexanoic acid exposure in Drosophila species
GEO Series GSE185176. Drosophila sechellia; Drosophila simulans; Drosophila melanogaster. 18 samples. Type: Expression profiling by high throughput sequencing.
Manipulating mitochondrial reactive oxygen species alters survival in unexpected ways in a Drosophila Cdk5 model of neurodegeneration
GEO Series GSE274587. Drosophila melanogaster. 40 samples. Type: Expression profiling by high throughput sequencing.
TRANSCRIPTIONAL RESPONSES OF ECOLOGICALLY DIVERSE DROSOPHILA SPECIES TO LARVAL DIETS DIFFERING IN RELATIVE SUGAR AND PROTEIN RATIOS
GEO Series GSE101664. Drosophila arizonae; Drosophila melanogaster; Drosophila mojavensis. 18 samples. Type: Expression profiling by high throughput sequencing.
Evolution of sex-dependent gene expression in three recently diverged species of Drosophila
GEO Series GSE17192. Drosophila pseudoobscura; Drosophila pseudoobscura bogotana; Drosophila persimilis. 18 samples. Type: Expression profiling by array.
Comparison of pure-species Drosophila expression to hybrid expression
GEO Series GSE5655. Drosophila melanogaster; Drosophila simulans x Drosophila mauritiana; Drosophila mauritiana; Drosophila sechellia; Drosophila simulans; Drosophila sechellia x Drosophila simulans. 128 samples. Type: Expression profiling by array.
Expression divergence of chemosensory genes between Drosophila sechellia and its sibling species and its implications for host shift [Dsec JP]
GEO Series GSE67861. Drosophila sechellia. 6 samples. Type: Expression profiling by high throughput sequencing.
A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci [CUT&RUN in Drosophila species]
GEO Series GSE247153. Drosophila melanogaster; Drosophila yakuba; Drosophila simulans; Drosophila ananassae; Drosophila erecta. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.