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FIG. 11 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 11. — Cryptovalsa suaedicola Spooner (IMI139939 – holotype): A, B, herbarium material; C, appearance of stromata on host;D, horizontal section through stroma; E, section through stroma; F, neck region; G, peridium; H-I, asci; J, paraphyses; K-N, ascospores. Scale bars: C-E, 200 μm; F, 50 μm; G-J, 20 μm; K-N, 10 μm.
FIG. 7 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 7. — Cryptosphaeria bathurstensis (K.D.Hyde & Rappaz) Dayarathne & K.D.Hyde, comb. nov. (BRIP 78339 – holotype): A, herbarium material; B, horizontal section through ascostroma; C, appearance of ascostromata on host; D, section through ascoma; E, peridium; F-H, asci; I, paraphyses; J-N, ascospores. Scale bars: B, 500 μm; C, 1000 μm; D, 100 μm; E-H, 20 μm; I, 10 μm; J-N, 5 μm.
FIG. 5 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 5. — Sexual morph of Cryptosphaeria avicenniae Devadatha & V.V.Sarma, sp. nov. (AMH-9952 – holotype): A, ascomata erumpent, immersed in decaying wood of Avicennia marina; B, horizontal sections of ascomata; C, vertical section of ascomata; D, peridium; E-I, immature and mature asci; J, paraphyses; K-O, ascospores; P, germ tube develop from apical side of ascospore; Q, R, culture on PDA (Q-upper, R-lower). Scale bars: C, 100 μm; D, E, 50 μm; F-I, J, K = 20 μm; J, K, 20 μm; L-P, 5 μm.
FIG. 4 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 4. — Phylogram generated from the best scoring MP tree based on combined LSU and SSU sequence data. Bootstrap support values for maximum parsimony (MP) equal or greater than 60 % are given above the nodes. The tree is rooted to Xylaria hypoxylon (OCS 100004) and Xylaria acuta (5089). Scale bar: 50 (expected number of nucleotide substitutions per site per branch).
FIG. 13. — Eutypella naqsii K.D in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 13. — Eutypella naqsii K.D.Hyde (BRIP 22588, holotype). A, herbarium material; B, horizontal section through ascostroma; C, D, vertical section through ascoma; E, peridium; F, paraphyses; G-I, asci; J-N, ascospores. Scale bars: B, 1000 μm; C, 500 μm; D,100 μm; E, F-I, 20 μm; J, 10 μm; K-N, 5 μm.
FIG. 3 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 3. — Phylogram generated from the best scoring RAxML tree based on combined LSU and SSU sequence data. Bootstrap support values for maximum likelihood (ML, blue) equal or greater than 60 % are given above the nodes. Bayesian posterior probabilities (PP, green) equal or greater than 0.90 are shown above the branches. The tree is rooted to Xylaria hypoxylon (OCS 100004) and Xylaria acuta (5089). All sequences from ex-type strains are in bold. Scale bar: 0.02 (expected number of nucleotide substitutions per site per branch).
FIG. 17. — Pedumispora rhizophorae K.D.Hyde & E.B.G in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 17. — Pedumispora rhizophorae K.D.Hyde & E.B.G.Jones (BRIP 19201 – holotype): A, herbarium material; B, C, appearance of ascostromata on host; D, section through ascoma; E, section through neck region; F, peridium; G, paraphyses; H, I, asci; J, K, ascospores. Scale bars: B, 1000 μm; C, 500 μm; D, 50 μm; E-G, 20 μm; H-K, 100 μm.
FIG. 10 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 10. — Cryptovalsa mangrovei Abdel-Wahab & Inderb (IMI 379746 – holotype): A, B, herbarium material; C, D, appearance of stromata on host; E, section through ascoma; F, neck region; G, peridium; H paraphyses; I-L, asci; M, ascospores. Scale bars: C, 500 μm; D, 200 μm; E, F, 100 μm; G, H, M, 20 μm; I-K, 50 μm.
FIG. 2 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 2. — Phylogram generated from the best scoring RAxML tree based on ITS sequence data. Bootstrap support values for maximum likelihood (ML, black) and maximum parsimony (MP, blue) equal or greater than 60% are given above the nodes. Bayesian posterior probabilities (PP, green) equal or greater than 0.90 are shown above the branch. The tree is rooted to Xylaria hypoxylon (CBS 122620) and Kretzschmaria deusta (CBS 826.72). Scale bar: 0.09 (expected number of nucleotide substitutions per site per branch).
FIG. 16 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 16. — Halodiatrype mangrovei (K.D.Hyde) Dayarathne & K.D.Hyde (BRIP 19869 – holotype); A, herbarium material; B, C, appearance of ascomata on host surface; D-F, vertical section through ascoma; G, vertical section through neck region; H, peridium; I, paraphyses; J-L, asci; M-P, ascospores. Scale bars: B, E, F, 500 μm; C, 1000 μm; D, 200 μm; G, 50 μm; H, K-L, 20 μm; M-P, 10 μm.
FIG. 1 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 1. — Phylogram generated from the best scoring RAxML tree based on combined ITS and Btub sequence data. Bootstrap support values for maximum likelihood (ML, black) and maximum parsimony (MP, blue) equal or greater than 60 % are given above the nodes. Bayesian posterior probabilities (PP, green) equal or greater than 0.90 are shown above the branch. The tree is rooted to Xylaria hypoxylon (CBS 122620) and Kretzschmaria deusta (CBS 826.72). All sequences from ex-type strains are in bold. Symbols:, polysporous species;, octosporous species;, species with less than eight spores. Scale bar: 0.2 (expected number of nucleotide substitutions per site per branch).
FIG. 12 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 12. — Diatrype mangrovei Dayarathne & K.D.Hyde, sp. nov. (MFLU 17-0412 – holotype): A, appearance of ascostromata on host (Bruguiera cylindrica); B, horizontal section through ascostroma; C, section through ascoma; D, peridium; E-G, asci; H, ascospores; I, germinating ascospore; J, K, culture on PDA (J-upper, K-lower). Scale bars: A, 500 µm; B, 500 μm; C, 100 μm; D-G, 50 μm; H, I, 10 μm.
FIG. 8 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 8. — Cryptosphaeria halophila Dayarathne & K.D.Hyde, sp. nov. (MFLU 16-1199 – holotype): A, host (Avicennia sp.); B, horizontal section through conidioma; C-E, conidiophores and conidiogenous cells; F-I, conidia. Scale bars: A, 100 μm; B-E, 50 μm; F-I, 20 μm.
FIG. 6 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 6. — Asexual morph of Cryptosphaeria avicenniae Devadatha & V.V.Sarma, sp. nov. (AMH-9952 – holotype): A, conidiomata on host (Avicennia marina); B, C, horizontal section through conidioma; D, peridium; E, F, conidiophores and conidiogenous cells; G-L, conidia. Scale bars: B-C, 100 μm; D, 50 μm; E-L, 10 μm.
FIG. 15. — B, C, F, H, I, K, M-P, R, S in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 15. — B, C, F, H, I, K, M-P, R, S, Halodiatrype salinicola Dayarathne & K.D.Hyde (MFLU 15-0179 – holotype); A, D, E, G, J, L, O, P, T, U, Halodiatrype avicenniae Dayarathne & K.D.Hyde (MFLU 16-1185 – holotype and MFLU – 16-1197):A, B, horizontal section of ascoma (MFLU 16-1185,MFLU 15-0179);C, D, vertical section through ascoma (MFLU 15-0179, MFLU 16-1185); E, F, peridium (MFLU 16-1185, MFLU 15-0179); G, H, section through neck (MFLU 16-1185, MFLU 15-0179); I, J, asci (MFLU 15-0179 (in Congo red), MFLU 16-1185); K, L, paraphyses (MFLU 15-0179, MFLU 16-1185); M-P, ascospores (MFLU 15-0179, MFLU 16-1185); Q, conidia from culture on PDA (MFLU 18-0150); R-U, culture on PDA (MFLU 15-0179, MFLU 16-1185) Scale bars: A, 1000 µm; B, 500 µm; C, D, I-L, 100 μm; E, F, Q, 20 μm; G-H, 50 μm; M-P, 10 μm
Individual ostracode valve analyses (IOVA) of Sclerocypris clavularis from modern Lake Turkana sediments
<p>We provide stable carbon (δ¹³C) and oxygen (δ¹⁸O) isotope measurements in individual calcitic valves of extant ostracode species, Sclerocypris clavularis, from modern sediments in 17 sites across Lake Turkana, eastern Africa. These sediments were collected using a modified Ekman dredge during May-November, 1979. Pooled statistics of these individual ostracode valve analyses (IOVA) of δ¹³C and δ¹⁸O measurements (n = 329) at each site show strong correlations with lake hydrological parameters. Within-site variance in IOVA-δ¹³C is larger (~60%) than that of IOVA-δ¹⁸O. Yet, pooled averages exhibit a systematic pattern with higher δ values towards the southern part of the lake, away from Omo River inflow, which is the largest riverine input into Lake Turkana (comprising ~90% of overall inflows). We suggest that the latitudinal δ¹³C gradient may arise from low riverine δ¹³C and low organic matter δ¹³C as a productivity response to nutrient-rich Omo River inflow towards the north. The δ¹⁸O pattern may be explained by the diminishing influence of Omo River inflows and more evaporation driving higher IOVA-δ¹⁸O values towards the windier, southern basin. We conclude that pooled IOVA statistics in Omo-Turkana sediments can aid interpretations of past regional paleohydrology and its variability in this basin.</p>
17 Landmarks from modern human skulls
<p>Coordinates of 17 landmarks of modern human skulls. They have not been subjected to Procrustes superimposition. See paper from Bucchi and Fonseca for details: Shape variation among skull regions using geometric morphometrics.</p> <p>Open in R: readRDS(file = "data.rds")</p> <p>The skulls are held at the Subactual Collection of Santiago (Facultad de Ciencias Sociales, Universidad de Chile)</p> <p>Landmark configuration:</p> <table align="left"> <tbody> <tr> <td> <p>Number</p> </td> <td> <p>Landmark</p> </td> <td> <p>Location</p> </td> </tr> <tr> <td> <p>1</p> </td> <td> <p>Nasion</p> </td> <td> <p>The point of the intersection between the frontonasal suture and the midsagittal plane</p> </td> </tr> <tr> <td> <p>2, 8</p> </td> <td> <p>Fontomalar (paired: right and left)</p> </td> <td> <p>Most anterior point of the zygomaticofrontal suture</p> </td> </tr> <tr> <td> <p>3, 9</p> </td> <td> <p>Superior zigotemporale (paired)</p> </td> <td> <p>Most superior point in the temporozygomatic suture</p> </td> </tr> <tr> <td> <p>4, 10</p> </td> <td> <p>Porion (paired)</p> </td> <td> <p>Lateral most part of the superior margin of the external auditory meatus</p> </td> </tr> <tr> <td> <p>5, 11</p> </td> <td> <p>Mastoidale (paired)</p> </td> <td> <p>point at the lowest point of the mastoid process</p> </td> </tr> <tr> <td> <p>6, 12</p> </td> <td> <p>Zygomaxillare (paired)</p> </td> <td> <p>Most inferior point in the zygomaticomaxillary suture</p> </td> </tr> <tr> <td> <p>7, 13</p> </td> <td> <p>Ectomalare (paired)</p> </td> <td> <p>The most posterior point on the alveolar bone</p> </td> </tr> <tr> <td> <p>14, 16</p> </td> <td> <p>Pterion (paired)</p> </td> <td> <p> Intersection of the frontal, sphenoid, parietal and the squamous part of temporal bone</p> </td> </tr> <tr> <td> <p>15, 17</p> </td> <td> <p>Asterion (paired)</p> </td> <td> <p>Point where the temporal, parietal and occipital bones meet</p> </td> </tr> </tbody> </table> <p> </p>
Main and extended tables for the 207-word Swadesh list of Early Sranan and Modern Sranan with parts of speech, semantic categories, source languages and semantic and lexical changes
<p>The dataset was made for the purposes of the author's master thesis, titled <a href="https://repozitorij.uni-lj.si/Dokument.php?id=170462&lang=slv">"Socio-Cultural Motivations for the Acquisition of Lexical Items in Sranan Tongo’s Core Vocabulary"</a>. The dataset includes two worksheets. The first is titled "Main table", and it includes all the data, where each Swadesh gloss (1 to 207) is assigned one ID (No., first column), even if there are multiple Modern Sranan (MSr) equivalents. The second worksheet, titled "Extended table", includes additional IDs (No., first column) by hyphenating, so that each MSr equivalent has its separate ID number (e. g. gloss numbered 2 has 3 MSr equivalents, so these are now numbered 2-1, 2-2, and 2-3, respectively). <br> This allowed the author to also make a clearer distinction according to source languages, as the MSr equivalents for the same gloss sometimes come from different source languages. More about the methodology of the tables and their importance for the research is available in the thesis, available <a href="https://repozitorij.uni-lj.si/Dokument.php?id=170462&lang=slv">at this link</a>. </p>
Leadership: Modern Times | Shiʿi Islam | iBrary
<p>This video introduces the module “Leadership: Modern Times” from the course Shiʿi Islam, taught by Prof. Shafique N. Virani. You can download the complete online course, including this module, for free from <a href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqblV4MU9qRjNuZ2lKb3BYNUZtZE9vcTFzYUxSQXxBQ3Jtc0tuSDFqSmd6X3lvOF8wM0FXNEMwNEFrcmRwUnNXUkxxTmUwRTNkbHVqejJWNXRXaUdsbDdZcV9xcC1zZVlTVndrNVFFeFdVQVJSdmdXeHV1c19BNFV2aVBDLUNVZVlNZk5rYTIzQjdTazZjOUF3NE1Vaw&q=https%3A%2F%2Fwww.ecampusontario.ca%2F&v=7t2VVLQDz5c">https://www.ecampusontario.ca/</a>.</p>
Normalisation of Early Modern Science: Digitized Corpus of 17th- and 18th-Century Sources
<p>This dataset contains a digitized corpus of early modern natural philosophy works that underlie the European Research Commission-funded Starting Grant “The Normalisation of Natural Philosophy: How Teaching Practices Shaped the Evolution of Early Modern Science,” (grant agreement No. 801653 NaturalPhilosophy), led by Dr. Andrea Sangiacomo at the Faculty of Philosophy at the University of Groningen.</p> <p>The methodology we used for the digitization of the present dataset is described in the paper:</p> <ul> <li>A. Sangiacomo, H. Hogenbirk, R. Tanasescu, A. Karaisl, N White. 2022. “Reading in the Mist: High-Quality Optical Character Recognition Based on Early Modern Digitized Books.” <em>Digital Scholarship in the Humanities</em>. https://bit.ly/3vwvwKI</li> </ul> <p>The inventory of the present dataset is available at <a href="https://zenodo.org/record/5566681">DOI: 10.5281/zenodo.5566681</a></p> <p>The methodology behind the retrieval, cleaning, and annotation of the above inventory is described in the paper:</p> <ul> <li>Sangiacomo, Andrea; Tanasescu, Raluca; Donker, Silvia; Hogenbirk, Hugo. 2021. “Mapping the Evolution of Early Modern Natural Philosophy: Corpus Collection and Authority Acknowledgement,” published in the <em>Annals of Science</em> (DOI: 10.1080/00033790.2021.1992502; permanent link: <a href="https://doi.org/10.1080/00033790.2021.1992502">https://doi.org/10.1080/00033790.2021.1992502</a></li> </ul> <p>The dictionaries from which we selected the data in worksheets 2-5 in the inventory are the following:</p> <ul> <li>Wiep van Bunge, Henri Krop, Bart Leeuwenburgh, Paul Schuurman, Han van Ruler and Michiel Wielema, <em>Dictionary of Seventeenth- and Eighteenth-Century Dutch Philosophers</em> (London: Bloomsbury, 2003);</li> <li>John Yolton, Valdimir Price and John Stephens. <em>Dictionary of Eighteenth-Century British Philosophers</em> (London: Bloomsbury, 1999);</li> <li>Andrew Pyle. <em>Dictionary of Seventeenth-Century British Philosophers</em> (London: Bloomsbury, 2000);</li> <li>Luc Foisneau. <em>Dictionary of Seventeenth-Century French Philosophers</em> (London: Bloomsbury, 2008);</li> <li>Heiner F. Klemme and Manfred Kuehn. <em>Dictionary of Eighteenth-Century Philosophers</em> (London: Bloomsbury, 2011).</li> </ul> <p>University of Groningen Team:</p> <ul> <li>Andrea Sangiacomo (principal investigator)</li> <li>Raluca Tanasescu (postdoctoral researcher)</li> <li>Silvia Donker and Hugo Hogenbirk (PhD students)</li> <li>Cristian A. Marocico (scientific programmer, Center for Information Technology)</li> <li>Wim Breakman (bibliographer, University of Groningen Library)</li> </ul>
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