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401
datasets available to search
ShareScore release 0.9.0
Dataset results
401 results for “nuclear genes”
Gene expression profile of adult male mouse liver using total liver RNA-seq and nuclear liver RNA-Seq
GEO Series GSE66001. Mus musculus. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Germline nuclear RNAi in C. elegans represses transgenerational inheritance of heat-induced gene transcriptional activation (sRNA profiling)
GEO Series GSE74404. Caenorhabditis elegans. 24 samples. Type: Non-coding RNA profiling by high throughput sequencing.
POST-TRANSCRIPTIONAL REGULATION OF KRAS GENE: MECHANISM INVOLVING 5’UTR RNA G-QUADRUPLEXES, LONG NONCODING RNA AND NUCLEAR RIBONUCLEOPROTEIN A1
GEO Series GSE283011. Homo sapiens. 8 samples. Type: Other.
Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha (zebrafish RNA-seq)
GEO Series GSE90446. Danio rerio. 10 samples. Type: Expression profiling by high throughput sequencing.
Figure 6 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Figure 6. Cladogram showing the evolution of Opalinata* based on the proposed evolution of morphological traits (white circles; Delvinquier and Patterson 1993) and the characteristics of the rRNA genes (green circles). The relationships within Proteromonadida are not clear and are represented as a polytomy. Evolutionary steps are as follows. (1) Uninucleated cells develop cytoplasmic membranes with ridges or folds supported by a cortical cytoskeleton; few flagella* with a transitional helix in its structure; rRNA with secondary structure and GC content similar to that of outgroup taxons (i.e. Blastocystis). (2) Multiple flagella covering the cell surface; marginal falx. (3) Insertions made of short tandem repeats (STRs) in the expansion regions of rRNA; low GC in rRNA insertions and ITS1–ITS2 regions. (4) Binucleated (occasionally four-nucleated) cells. (5) Increase in number and length of rRNA insertions; very low GC content in rRNA insertions and ITS1–ITS2 regions. (6) Axial falx. (7) Multinucleate cells. (8) Partial loss of kineties. The position of Hegneriella* if valid* cannot be determined with available data.
FIGURE 1. Clustering diagram showing overall similarity among 15 in A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes
FIGURE 1. Clustering diagram showing overall similarity among 15 data blocks of the full data set (5 genes × 3 codon positions) using SAS. Each block is indicated at the tip of terminal branches by gene name and codon position. Each node shows clustering terminal branches (data set) based on hierarchical clustering algorithm using a Bayesian approach.
Stress-induced splicing activation of immediate early genes by nuclear speckle reorganization [ANI]
GEO Series GSE181446. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
The Biotagging toolkit for analysis of specific cell populations in zebrafish reveals gene regulatory logic encoded in the nuclear transcriptome
GEO Series GSE89670. Danio rerio. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
A role for nuclear factor interleukin-3 (NFIL3), a critical transcriptional repressor, in down-regulation of periovulatory gene expression
GEO Series GSE26730. Rattus norvegicus. 3 samples. Type: Expression profiling by array.
PML nuclear bodies form a regulatory hub via liquid-liquid phase separation for TRIM33 control of Lefty1/2 genes in mouse embryonic stem cells [CHIP-seq]
GEO Series GSE199736. Mus musculus. 38 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cell cycle-dependent gene networks for cell proliferation activated by nuclear CK2 complexes [array]
GEO Series GSE227739. Homo sapiens. 8 samples. Type: Expression profiling by array.
The Effect of Translocation-Induced Nuclear Re-organization on Gene Expression
GEO Series GSE13122. Homo sapiens. 26 samples. Type: Expression profiling by array.
The Nuclear Lamina Binds the EBV Genome During Latency and Regulates Viral Gene Expression
GEO Series GSE198954. human gammaherpesvirus 4. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High-fat diet induces the modulation of hepatic nuclear receptors and their target genes in C57BL/6 mice
GEO Series GSE118070. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Nuclear orphan receptor TLX affects gene expression in pancreatic beta cells
GEO Series GSE66551. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
The Nuclear Matrix Regulates Gene Induction By Maintaining the Chromatin-Speckle Association and Compartmentalization [RNA-Seq]
GEO Series GSE311138. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
Identification of somatic memory genes during bovine nuclear reprogramming by transcriptome sequencing
GEO Series GSE124100. Bos taurus. 12 samples. Type: Expression profiling by high throughput sequencing.
Effects of HOE-1 (RNase Z/ELAC2) nuclear hyperactivation on gene expression in Caenorhabditis elegans.
GEO Series GSE261565. Caenorhabditis elegans. 12 samples. Type: Expression profiling by high throughput sequencing.
Nuclear body reorganization by the viral RNA kaposin promotes Kaposi-sarcoma associated herpesvirus gene expression
GEO Series GSE278292. Human gammaherpesvirus 8; Homo sapiens. 50 samples. Type: Expression profiling by high throughput sequencing.
Impact of high fat diet and hepatocyte nuclear factor four alpha loss on hepatic gene expression in mice.
GEO Series GSE137051. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.