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FIGURE 5 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species

FIGURE 5. DensiTree cloudogram representations of *BEAST analyses, removing the first 10% of trees as burn-in, produced from the four nuDNA gene alignments of Dataset E: A. original unphased; B. phased. Dark blue branches represent the most frequently occurring topology, light blue branches represent the consensus trees with intensity proportional to the frequency of the topology in the dataset, and green areas represent all topologies in the dataset. Refer to Appendix I, Table 2 for revised names for taxa based on the taxonomic review.

FIGURE 11 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species

FIGURE 11. Megophrys robusta lectotype: adult female (BMNH 1947.2.25.19: SVL 102.0 mm) in preservation: A. dorsal view; B. ventral view; C. profile view of head; D. ventral view of foot; E. ventral view of hand.

FIGURE 8 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species

FIGURE 8. Distribution map of the western MMSG taxa: A. All taxa (excluding M. monticola) from Northeast India and surrounding countries: diamonds represent type localities, circles represent referred localities based on molecularly sampled specimens: orange = M. zhangi; yellow = M. robusta; black = M. medogensis; dark blue = M. major; pink = Megophrys flavipunctata sp. nov.; dark green = Megophrys oreocrypta sp. nov.; light blue = Megophrys himalayana sp. nov.; light green = Megophrys periosa sp. nov.; pale blue = M. cf. periosa; purple = M. glandulosa. B. Inset rectangle in Figure A enlarged to show the distribution map for M. monticola from Darjeeling and Sikkim region, Northeast India, showing distribution of named mitochondrial haplotypes: stars represent the type localities, circles represent referred localities confirmed from sequence data: red = M. "sanu" comb. nov., light blue = M. "katabhako" comb. nov. Blue lines represent major rivers; grey lines represent international borders.

FIGURE 7 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species

FIGURE 7. Megophrys monticola: A–H. referred specimens from West Bengal state: A. and G. adult female (SDBDU 2011.1030: SVL 47.3 mm): A. dorsolateral view of in life; G. ventral view in preservation as example showing extensive dark pigmentation on throat and chest. B. dorsolateral view of adult male (SDBDU 2011.1423: SVL 46.7 mm) in life. C. and E. adult male (SDBDU 20011.1047: SVL 40.7 mm): C. dorsolateral view in life; E. dorsal view in preservation. D. ventral pigmentation immediately after euthanisation for an adult female (SDBDU 2011.1065: SVL 56.1 mm, left) and adult male (SDBDU 2011.1066: SVL 44.2 mm, right). F. dorsal view of adult female (SDBDU 2011.1049: SVL 48.7 mm) in preservation. H. showing variation in ventral pigmentation within a population, specimens from left to right (male SDBDU 2011.1048: SVL 38.2 mm; female SDBDU 2011.1049: SVL 48.7 mm; male SDBDU 2011.1047: SVL 40.7 mm; male SDBDU 2011.1046: SVL 38.4 mm).

FIGURE 17 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species

FIGURE 17. Megophrys flavipunctata sp. nov.: A. variation of dorsal markings in adult female paratypes, left (BNHS 6043: SVL 74.6 mm), centre (BNHS 6042: SVL 68.0 mm), and right (BNHS 6041: SVL 68.0 mm) in preservation; B. dorsolateral view of holotype adult male (BNHS 6040: SVL 68.4 mm) in life; C. and D. adult female paratype (BNHS 6043: SVL 74.6 mm) in life: C. dorsolateral view; D. ventral view; E. and F. adult male referred specimen (SDBDU 2007.134: SVL 67.5 mm) from Nagaland state, in life: E. dorsolateral view; F. ventral view.

FIGURE 18 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species

FIGURE 18. Megophrys oreocrypta sp. nov. holotype: adult female (BNHS 6045: SVL 94.9 mm) in preservation: A. dorsal view; B. ventral view; C. profile view of head; D. ventral view of hand; E. ventral view of foot.

FIGURE 2 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species

FIGURE 2. BI concatenated gene tree based on the 47 taxa concatenated mt+nuDNA alignment (Dataset C), with ML node values provided. Posterior probability/bootstrap values>95% in both analyses are represented by a black spot on the node, values <95% in one or both analyses are provided next to relevant nodes, where * is>95%, and – is given for nodes that were not resolved on the ML tree. Taxon names in pink represent the eastern clade, blue represents the western clade (southern subclade), and green represents the western clade (northern subclade). Revised names for taxa based on the taxonomic review are provided in parentheses.

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FIGURE 2. Phylogenetic hypothesis inferred from a in A new species of Phyzelaphryne Heyer, 1977 (Anura: Eleutherodactylidae) from the Japurá River basin, with a discussion of the diversity and distribution of the genus

FIGURE 2. Phylogenetic hypothesis inferred from a maximum likelihood analysis (ln = -9995.417499) of concatenated DNA sequences of genes 16S and COI (1,586 pb) of Phyzelaphryninae. Eleutherodactylus limbatus is used as outgroup.

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Fig. 1 in Phylogenetic and functional diversity of African muroid rodents at different spatial scales

Fig. 1 Relationship between species richness of African muroid communities and their respective a phylogenetic diversity, b phylogenetic structure, and c functional diversity. Each dot represents a local community (n = 72). For the phylogenetic structure plot, two linear

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Fig. 4 a in Phylogenetic and functional diversity of African muroid rodents at different spatial scales

Fig. 4 a Bray-Curtis dissimilarity dendrogram for illustrating how similar African muroid communities are in terms of their species composition. b Non-metric multidimensional scaling (NMDS) plot of Bray-Curtis dissimilarity on presence data. Communities are coloured according to the biogeographic region to which they belong (yellow: Northern African; orange: Saharan; red: Sudanian; green; Congolian; cy- an: Ethopian; pink: Somalian; blue: Zambezian; grey: Southern African; see the scheme in the in- set, which is an adaptation of the partitioning of Africa proposed by Linder et al. 2012), and their ap- proximate geographical location is represented in the map on the left

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Fig. 3 a in Phylogenetic and functional diversity of African muroid rodents at different spatial scales

Fig. 3 a Pairwise results of partition of phylogenetic and functional β diversity into its nestedness (above diagonal) and turnover (below diagonal) components wherein higher values are indicated in red. b Phylogenetic and functional dendrograms obtained by using UPGMA

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Fig. 10 Phylogenetic relationships among 14 in Uncovering the hidden diversity of the Neotropical butterfly genus Yphthimoides Forster (Nymphalidae: Satyrinae): description of three new species based on morphological and molecular data

Fig. 10 Phylogenetic relationships among 14 species of Yphthimoides based on DNA sequences of CoxI and obtained by a maximum likelihood analysis. Numbers below branches are bootstrap support

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FIGURE 3 in Evolution of species diversity in the genus Chamaecostus (Costaceae): molecular phylogenetics and morphometric approaches

FIGURE 3. Box and whisker plots of three significantly different morphometric variables between Chamaecostus cuspidatus (n=14), Chamaecostus subsessilis s.str. (n=51) and Chamaecostus acaulis comb. nov. (n=83), showing means, quartiles and ranges. A—Leaf length (cm); B—Leaf Maximum Width (cm); C—Leaf Area (cm2).

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FIGURE 4. Chamaecostus acaulis comb. nov. and Chamaecostus subsessilis s in Evolution of species diversity in the genus Chamaecostus (Costaceae): molecular phylogenetics and morphometric approaches

FIGURE 4. Chamaecostus acaulis comb. nov. and Chamaecostus subsessilis s.str.. (B) photo by W.W.Thomas. (D) photo by D.Skinner.

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FIGURE 1 in Evolution of species diversity in the genus Chamaecostus (Costaceae): molecular phylogenetics and morphometric approaches

FIGURE 1. Schematic representation of measured morphometric variables; LL—Leaf Length, LW—Leaf Maximum Width, AA—Apex Angle, BA—Base Angle.

Figure 6 in Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)

Figure 6. Phylogeny of Acestrorhamphidae and subfamilies Stethaprioninae, Pristellinae, Jupiabinae, Tyttobryconinae, and Hyphessobryconinae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support.

Figure 4 in Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)

Figure 4. Phylogeny of Characidae and subfamilies Aphyocharacinae, Cheirodontinae, Exodontinae, Tetragonopterinae, and Characinae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support.

Figure 3 in Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)

Figure 3. Phylogeny of Spintherobolidae and Stevardiidae and subfamilies Landoninae, Xenurobryconinae, Glandulocaudinae, Argopleurinae, Hemibryconinae, Stevardiinae, Planaltininae, Creagrutinae, and Diapominae based on 1348 nuclear loci of ultraconserved elements

Figure 2 in Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)

Figure 2. Phylogenetic relationships of the major clades of Spintherobolidae, Stevardiidae, Characidae, and Acestrorhamphidae based on the 75% complete matrix of 1348 ultraconserved elements (575 taxa; 538 472 bp).

Figure 7 in Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)

Figure 7. Phylogeny of Acestrorhamphidae and subfamilies Thayeriinae, Rhoadsiinae, Grundulinae, and Acestrorhamphinae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support.