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Dataset results
507 results for “COAD”
COADS_161-6
This is a diagnostic biface collected in Marion Township, Fayette County, Ohio. Material Type: Flint Ridge Uploaded by: Sidney Travis Suggested Data Citation: Nolan, Kevin C., Eric Olson, Kelli Wathen, Abby Clark, Sidney Travis, and Michael Shott, 2017. COADS_161-6, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_9-166
Diagnostic biface collected in Liberty Township, Ross County, Ohio. Material: Delaware Uploaded by: Abby Clark Suggested Data Citation: Nolan, Kevin C., Andrew Weiland, Kelli Wathen, Abby Clark, and Michael Shott, 2017. COADS_9-166, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_11-10
Diagnostic biface collected in Liberty Township, Ross County, Ohio; Material; Delaware Uploaded by: Abby Clark Suggested Data Citation: Nolan, Kevin C., Andrew Weiland, Kelli Wathen, Abby Clark, and Michael Shott, 2017. COADS_11-10, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_10-353
Diagnostic biface collected in Liberty Township, Ross County, Ohio. Material: Delaware Uploaded by: Kelli Wathen Suggested Data Citation: Nolan, Kevin C., Andrew Weiland, Kelli Wathen, Abby Clark, and Michael Shott, 2017. COADS_10-353, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_28-190
Diagnostic biface collected in Liberty Township, Ross County, Ohio. Material: Flint Ridge Uploaded by: Gabi Ritter Nolan, Kevin C., Eric Olson, Kelli Wathen, Gabi Ritter, Abby Clark, and Michael Shott, 2017. COADS_28-190, 3D Model .ply file.Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_156-51
Diagnostic biface collected in Genoa Township, Franklin County, Ohio. Material: Paoli Type Determination: Adena Uploaded by: Kendall Brophy Nolan, Kevin C., Eric Olson, Kelli Wathen, Sidney Travis, Kendall Brophy and Michael Shott, 2017. COADS_156-51, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_129SW-791
Diagnostic biface collected in Liberty Township, Ross County, Ohio. Material Type: Flint Ridge Suggested Data Citation: Nolan, Kevin C., Eric Olson, Kelli Wathen, Abby Clark, Hannah Banks, and Michael Shott, 2017. COADS_129SW-791, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_24-95
Diagnostic biface collected in Liberty Township, Ross County, Ohio; Material: Delaware Uploaded by: Abby Clark Suggested Data Citation: Nolan, Kevin C., Andrew Weiland, Kelli Wathen, Abby Clark, and Michael Shott, 2017. COADS_24-95, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_48-17
This is a diagnostic biface collected in Franklin Township, Ross County, Ohio. Material Type: Upper Mercer Uploaded by: Sidney Travis Suggested Data Citation: Nolan, Kevin C., Eric Olson, Kelli Wathen, Abby Clark, Sidney Travis, and Michael Shott, 2017. COADS_48-17, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_18-21
Diagnostic biface collected in Liberty Township, Ross County, Ohio; Material: Unknown; Type Determination: Cresap Uploaded by: Abby Clark Suggested Data Citation: Nolan, Kevin C., Andrew Weiland, Kelli Wathen, Abby Clark, and Michael Shott, 2017. COADS_18-21, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_89-214
This is a diagnostic biface collected in Liberty Township, Ross County, Ohio. Material Type: Upper Mercer Uploaded by: Sidney Travis Suggested Data Citation: Nolan, Kevin C., Eric Olson, Kelli Wathen, Abby Clark, Sidney Travism, and Michael Shott, 2017. COADS_89-214, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_30-70
Core collected in Liberty Township, Ross County, Ohio. Material: Delaware Uploaded by: Abby Clark Suggested Data Citation: Nolan, Kevin C., Andrew Weiland, Kelli Wathen, Abby Clark, and Michael Shott, 2017. COADS_30-70, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
COADS_39-145
Diagnostic biface collected in Liberty Township, Ross County, Ohio. Material: Delaware Uploaded by: Abby Clark Suggested Data Citation: Nolan, Kevin C., Andrew Weiland, Kelli Wathen, Abby Clark, and Michael Shott, 2017. COADS_39-145, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab
PIVOT - COAD (light)
<p>Pre-processed TCGA COAD data used for PIVOT analysis.</p>
RUV-III-PRPS normalised data of the TCGA READ, COAD and BRCA RNA-seq studies.
<p>This repository contains the RUV-III-PRPS normalised data of the TCGA READ, COAD and BRCA RNA-seq studies. These studies were used to show how to use RUV-III-PRPS to remove unwanted variation from RNA-seq data. We refer to our bioRxiv paper for more details https://www.biorxiv.org/content/10.1101/2021.11.01.466731v1.</p>
FIGURE 2. Ceratobasidium gomesae COAD 3147 in A new mycorrhizal species of Ceratobasidium (Ceratobasidiaceae) associated with roots of the epiphytic orchid Gomesa recurva from Brazilian Atlantic Forest
FIGURE 2. Ceratobasidium gomesae COAD 3147. (a) Three-day-old PDA culture; (b) Hyphae stained with SYBR Green I and Calcofluor showing binucleate cells (N = nuclei; S = septa); (c) Hyphae with branching at right angles; (d) Monilioid cell chains in CMA. Scale bars C and D = 20 µm; B = 25 µm.
COAD-MS Model, Figures 2,3, and supplementary mixing model.
<p>COAD-MS Model created by Philip Staudigel. </p> <p>Includes the scripts to generate all components of Figure 2 and 3. </p> <p>Science Advances 2024, "Resolving and correcting for kinetic biases on methane seep paleotemperature using carbonate ∆47/∆48 analysis" adn0155</p> <p>Patch Note April 25, 2024: Corrected issue with Seep_Function.m, which caused fatal errors in model (uncommented line 10).</p> <p> </p>
DICOM converted Slide Microscopy images for the CPTAC-COAD collection
<p>This dataset corresponds to a collection of images and/or image-derived data available from National Cancer Institute <a href="https://portal.imaging.datacommons.cancer.gov/">Imaging Data Commons (IDC)</a> [1]. This dataset was converted into DICOM representation and ingested by the IDC team. You can explore and visualize the corresponding images using IDC Portal here: <a href="https://portal.imaging.datacommons.cancer.gov/explore/filters/?collection_id=cptac_coad">CPTAC-COAD</a>. You can use the manifests included in this Zenodo record to download the content of the collection following the <b>Download instructions</b> below.</p> <h3>Collection description</h3> <p> <span>This collection contains subjects from the National Cancer Institute’s <u><a href="https://proteomics.cancer.gov/programs/cptac" rel="nofollow">Clinical Proteomic Tumor Analysis Consortium</a></u> CPTAC Colon Adenocarcinoma cohort. CPTAC is a national effort to accelerate the understanding of the molecular basis of cancer through the application of large-scale proteome and genome analysis, or proteogenomics.</span></p> <p> Please see the <a href="">CPTAC-COAD <i></i></a> wiki page to learn more about the images and to obtain any supporting metadata for this collection.</p> <h3>Files included</h3> <p>A manifest file's name indicates the IDC data release in which a version of collection data was first introduced. For example, <code>collection_id-idc_v8-aws.s5cmd</code> corresponds to the contents of the <code>collection_id</code> collection introduced in IDC data release v8. If there is a subsequent version of this Zenodo page, it will indicate when a subsequent version of the corresponding collection was introduced.</p> <ol> <li><code>cptac_coad-idc_v18-aws.s5cmd</code>: manifest of files available for download from public IDC Amazon Web Services buckets</li> <li><code>cptac_coad-idc_v18-gcs.s5cmd</code>: manifest of files available for download from public IDC Google Cloud Storage buckets</li> <li><code>cptac_coad-idc_v18-dcf.dcf</code>: Gen3 manifest (for details see <a href="Gen3 manifest documentation">https://learn.canceridc.dev/data/organization-of-data/guids-and-uuids</a>)</li> </ol> <p>Note that manifest files that end in <code>-aws.s5cmd</code> reference files stored in Amazon Web Services (AWS) buckets, while <code>-gcs.s5cmd</code> reference files in Google Cloud Storage. The actual files are identical and are mirrored between AWS and GCP.</p> <h3>Download instructions</h3> <p>Each of the manifests include instructions in the header on how to download the included files.</p> <p>To download the files using <code>.s5cmd</code> manifests:</p> <ol> <li>install <a href="https://github.com/ImagingDataCommons/idc-index">idc-index</a> package: <code>pip install --upgrade idc-index</code></li> <li>download the files referenced by manifests included in this dataset by passing the <code>.s5cmd</code> manifest file: <code>idc download manifest.s5cmd</code>.</li> </ol> <p>To download the files using <code>.dcf</code> manifest, see manifest header.</p> <h3>Acknowledgments</h3> <p>Imaging Data Commons team has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Task Order No. HHSN26110071 under Contract No. HHSN261201500003l.</p> <h3>References</h3> <p>[1] Fedorov, A., Longabaugh, W. J. R., Pot, D., Clunie, D. A., Pieper, S. D., Gibbs, D. L., Bridge, C., Herrmann, M. D., Homeyer, A., Lewis, R., Aerts, H. J. W., Krishnaswamy, D., Thiriveedhi, V. K., Ciausu, C., Schacherer, D. P., Bontempi, D., Pihl, T., Wagner, U., Farahani, K., Kim, E. & Kikinis, R. <i>National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence</i>. RadioGraphics (2023). <a href="https://doi.org/10.1148/rg.230180">https://doi.org/10.1148/rg.230180</a></p>
DICOM converted Slide Microscopy images for the TCGA-COAD collection
<p>This dataset corresponds to a collection of images and/or image-derived data available from National Cancer Institute <a href="https://portal.imaging.datacommons.cancer.gov/">Imaging Data Commons (IDC)</a> [1]. This dataset was converted into DICOM representation and ingested by the IDC team. You can explore and visualize the corresponding images using IDC Portal here: <a href="https://portal.imaging.datacommons.cancer.gov/explore/filters/?collection_id=tcga_coad">TCGA-COAD</a>. You can use the manifests included in this Zenodo record to download the content of the collection following the <b>Download instructions</b> below.</p> <h3>Collection description</h3> <p> The Cancer Genome Atlas-Colon Adenocarcinoma (TCGA-COAD) data collection is part of a larger effort to enhance the TCGA http://cancergenome.nih.gov/ data set with characterized radiological images. The Cancer Imaging Program (CIP), with the cooperation of several of the TCGA tissue-contributing institutions, has archived a large portion of the radiological images of the COAD cases.</p> <p> Please see the <a href="">TCGA-COAD <i></i></a> page to learn more about the images and to obtain any supporting metadata for this collection.</p> <h3>Files included</h3> <p>A manifest file's name indicates the IDC data release in which a version of collection data was first introduced. For example, <code>collection_id-idc_v8-aws.s5cmd</code> corresponds to the contents of the <code>collection_id</code> collection introduced in IDC data release v8. If there is a subsequent version of this Zenodo page, it will indicate when a subsequent version of the corresponding collection was introduced.</p> <ol> <li><code>tcga_coad-idc_v18-aws.s5cmd</code>: manifest of files available for download from public IDC Amazon Web Services buckets</li> <li><code>tcga_coad-idc_v18-gcs.s5cmd</code>: manifest of files available for download from public IDC Google Cloud Storage buckets</li> <li><code>tcga_coad-idc_v18-dcf.dcf</code>: Gen3 manifest (for details see <a href="Gen3 manifest documentation">https://learn.canceridc.dev/data/organization-of-data/guids-and-uuids</a>)</li> </ol> <p>Note that manifest files that end in <code>-aws.s5cmd</code> reference files stored in Amazon Web Services (AWS) buckets, while <code>-gcs.s5cmd</code> reference files in Google Cloud Storage. The actual files are identical and are mirrored between AWS and GCP.</p> <h3>Download instructions</h3> <p>Each of the manifests include instructions in the header on how to download the included files.</p> <p>To download the files using <code>.s5cmd</code> manifests:</p> <ol> <li>install <a href="https://github.com/ImagingDataCommons/idc-index">idc-index</a> package: <code>pip install --upgrade idc-index</code></li> <li>download the files referenced by manifests included in this dataset by passing the <code>.s5cmd</code> manifest file: <code>idc download manifest.s5cmd</code>.</li> </ol> <p>To download the files using <code>.dcf</code> manifest, see manifest header.</p> <h3>Acknowledgments</h3> <p>Imaging Data Commons team has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Task Order No. HHSN26110071 under Contract No. HHSN261201500003l.</p> <h3>References</h3> <p>[1] Fedorov, A., Longabaugh, W. J. R., Pot, D., Clunie, D. A., Pieper, S. D., Gibbs, D. L., Bridge, C., Herrmann, M. D., Homeyer, A., Lewis, R., Aerts, H. J. W., Krishnaswamy, D., Thiriveedhi, V. K., Ciausu, C., Schacherer, D. P., Bontempi, D., Pihl, T., Wagner, U., Farahani, K., Kim, E. & Kikinis, R. <i>National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence</i>. RadioGraphics (2023). <a href="https://doi.org/10.1148/rg.230180">https://doi.org/10.1148/rg.230180</a></p>
FIGURE2. Colletotrichum serranegrense COAD 2100. A in Colletorichum serranegrense sp. nov., a new endophytic species from the roots of the endangered Brazilian epiphytic orchid Cattleya jongheana
FIGURE2. Colletotrichum serranegrense COAD 2100. A, Setae; B, Appressoria; C, Conidiophores; D, Conidia. Scale bars =10 μm.
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