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3,292 results for “DNA Barcode”
Linked collectors and determiners for: Review of the genus Shilovia Makarchenko (Diptera: Chironomidae: Diamesinae Boreoheptagyiini) from the mountains of Central Asia, with morphological description and DNA barcoding of known species.
Natural history specimen data linked to collectors and determiners held within, "Review of the genus Shilovia Makarchenko (Diptera: Chironomidae: Diamesinae Boreoheptagyiini) from the mountains of Central Asia, with morphological description and DNA barcoding of known species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/0ffdae09-7a8d-4c69-8372-0c84e7e72605">https://bionomia.net/dataset/0ffdae09-7a8d-4c69-8372-0c84e7e72605</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/0ffdae09-7a8d-4c69-8372-0c84e7e72605">https://gbif.org/dataset/0ffdae09-7a8d-4c69-8372-0c84e7e72605</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library.
Natural history specimen data linked to collectors and determiners held within, "A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/6ea2cc5c-857b-4b47-8135-8bff7efbd1fc">https://bionomia.net/dataset/6ea2cc5c-857b-4b47-8135-8bff7efbd1fc</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/6ea2cc5c-857b-4b47-8135-8bff7efbd1fc">https://gbif.org/dataset/6ea2cc5c-857b-4b47-8135-8bff7efbd1fc</a>. Formatted as a Frictionless Data package.
Fig. 1 in DNA barcoding of the genus Verbascum (Scrophulariaceae) in the Arabian Peninsula
Fig. 1. Bayesian majority-rule (50%) consensus tree of the combined chloroplast and ITS sequence data matrix. Support values on branches are Bayesian posterior probability/maximum parsimony bootstrap. Clades and species (including study samples) are colour-coded; their geographic distribution is indicated in Fig. 2.
Figure 6. Bayesian 90 in A survey of spiders (Arachnida: Araneae) of Prince of Wales Island, Alaska; combining morphological and DNA barcode identification techniques
Figure 6. Bayesian 90% majority rule consensus phylogram for the species Tachygyna ursina (Bishop and Crosby) and outgroup using a three partitioned model (GTR+I+G for each codon position) of a 669 bp region of the COI gene. Survey specimens are highlighted. Posterior probabilities are recorded above branches. Branch lengths from the Bayesian analysis followed by the branch lengths from the Neighbor Joining analysis, where applicable, are recorded below branches.
Figure 4. Bayesian 70 in A survey of spiders (Arachnida: Araneae) of Prince of Wales Island, Alaska; combining morphological and DNA barcode identification techniques
Figure 4. Bayesian 70% majority rule consensus phylogram for the species Parazygiella dispar (Kulczynski) and outgroup using a three partitioned model (GTR+I+G for each codon position) of a 669 bp region of the COI gene. Survey specimens are highlighted. Posterior probabilities are recorded above branches. Branch lengths from the Bayesian analysis followed by the branch lengths from the Neighbor Joining analysis, where applicable, are recorded below branches.
Figure 3. Bayesian 90 in A survey of spiders (Arachnida: Araneae) of Prince of Wales Island, Alaska; combining morphological and DNA barcode identification techniques
Figure 3. Bayesian 90% majority rule consensus phylogram for the species Hyptiotes gertschi Chamberlin and Ivie and outgroup using a three partitioned model (GTR+I+G for each codon position) of a 669 bp region of the COI gene. Survey specimens are highlighted. Posterior probabilities are recorded above branches. Branch lengths from the Bayesian analysis followed by the branch lengths from the Neighbor Joining analysis, where applicable, are recorded below branches. Specimen names include the BOLD sequence record (ex SPIAL163-10) followed by the GenBank sequence record (HQ580637) followed by the BOLD specimen number (ALASKA-02-F08) and then by the species and gene (Hyptiotes_gertschi_COI_5P)
Fig. 4 in DNA barcoding applied: identifying the larva of Merodon avidus (Diptera: Syrphidae)
Fig. 4. SEM micrographs of the anal segment of Merodon avidus Rossi, 1790 larva (La): A – anal segment; B – lappet; C – posterior respiratory process; D – inter-spiracular setae. Abbreviations: cs – central scars; is – inter-spiracular setae; lp – lappets; prp – posterior respiratory process; so – spiracular openings.
Fig. 2 in DNA barcoding applied: identifying the larva of Merodon avidus (Diptera: Syrphidae)
Fig. 2. Light micrographs of Merodon avidus Rossi, 1790 larva: A – larva in ventral view (La); B – head (Lc); C – thorax (La); D – primordia of pupal spiracles (Lc); E – lappets (Lc); F – posterior respiratory process (La). Abbreviations: am – antenno-maxillary organs; as – anterior spiracles; lp – lappets; mh – mouth hooks; prp – posterior respiratory process; pps – primordia of pupal spiracles.
Fig. 3 in DNA barcoding applied: identifying the larva of Merodon avidus (Diptera: Syrphidae)
Fig. 3. SEM micrographs of Merodon avidus Rossi, 1790 larva (La): A – mandibles; B – head; C – antenno-maxillary organs; D – anterior spiracle; E – larva in ventral view; F – locomotory organ. Abbreviations: ac – antennal cone; am – antenno-maxillary organs; an – antenna; lo – locomotory organs; mh – mouth hooks; mp – maxillary palp.
Fig. 7 in Two New Sandperches (Perciformes: Pinguipedidae: Parapercis) From South China Sea, Based On Morphology And Dna Barcoding
Fig. 7. Neighbour-joining tree of P. rubromaculata and P. randalli inferred from COI gene sequences with 10000 bootstrap replicates. Bootstrap values> 50% are indicated.
Fig. 2 in Two New Sandperches (Perciformes: Pinguipedidae: Parapercis) From South China Sea, Based On Morphology And Dna Barcoding
Fig. 2. Dorsal-lateral view (above) and ventral view (below) of head showing the cephalic pore system of Parapercis kentingensis n. sp., from the holotype.
Fig. 6. Parapercis rubromaculata n in Two New Sandperches (Perciformes: Pinguipedidae: Parapercis) From South China Sea, Based On Morphology And Dna Barcoding
Fig. 6. Parapercis rubromaculata n. sp. A, dorsal view of head of holotype, fresh; B, left side of caudal fin, QM I.33860, paratype, fresh; C, dorsolateral (above) and ventral (below) views of the head showing the cephalic pore system, from the holotype.
Fig. 4 in Two New Sandperches (Perciformes: Pinguipedidae: Parapercis) From South China Sea, Based On Morphology And Dna Barcoding
Fig. 4. Neighbour-joining tree of P. kentingensis and P. shaoi inferred from COI gene sequences with 10000 bootstrap replicates. Bootstrap values> 50% are indicated.
Figures 18–19 in Identification of a new species of Aphis (Hemiptera: Aphididae) based on distinct morphology rather than DNA barcoding
Figures 18–19. Colonies of aphids on their respective perennial host plants. 18) Aphis elena sp. nov. on Pycnanthemum virginianum (L.) T. Dur. & B.D. Jacks. ex B.L. Rob. & Fernald. Photograph: David Voegtlin, emeritus University of Illinois at Urbana-Champaign, Illinois. 19) Aphis monardae Oestlund on Monarda fistulosa L. Photograph: David Voegtlin, emeritus INHS of University of Illinois at Urbana-Champaign, Illinois.
Figure 20 in Identification of a new species of Aphis (Hemiptera: Aphididae) based on distinct morphology rather than DNA barcoding
Figure 20. Neighbor-joining tree of K2P distances of DNA barcodes of targeted species. Species names are followed by the GenBank accession numbers.
Figures 1–17 in Identification of a new species of Aphis (Hemiptera: Aphididae) based on distinct morphology rather than DNA barcoding
Figures 1–17. Holotype (INHS: 511,252 collection number) of Aphis elena 1–8) Apterous vivipara. 1) Body. 2) Antennal segments: II–V. 3) Ultimate rostral segment. 4) Cauda. 5) Siphunculus and marginal tubercle on abdominal segment VII. 6) Marginal tubercle on abdominal segment I, and hind coxa. 7) Setae on subgenital plate. 8) Setae on abdominal tergite VIII. 9–17) Alate vivipara. 9) Body. 10) Fore wing. 11) Antennal segments: II–IV. 12) Ultimate rostral segment. 13) Siphunculus and marginal tubercle on abdominal segment VII. 14) Marginal tubercle on abdominal segment I, and hind coxa. 15) Setae on abdominal tergite VIII. 16) Cauda. 17) Setae on sub-genital plate.
Figures 2–6 in DNA barcoding of the genus Dichopygina, with a new species from China (Diptera: Sciaridae)
Figures 2–6. Dichopygina perfecta (Pettey, 1918), male, (BIN BOLD: ACK5904). 2. Left gonostylus, ventral view. 3. The 4th flagellomere, lateral view. 4. Wing, dorsal view. 5. Genitalia, ventral view. 6. Inner margin of gonocoxites and tegmen with aedeagus, ventral view. Scale bars: 2–3, 5–6 = 0.1 mm; 4 = 1.0 mm.
Figures 7–12 in DNA barcoding of the genus Dichopygina, with a new species from China (Diptera: Sciaridae)
Figures 7–12. Dichopygina tibetana Leng, Heller and Huang, sp. nov., male. 7–11. Holotype (Sample ID: SM02765; Process ID: SCILA001-16); 12. Paratype (SM02766; SCILA002-16). 7. Wing, dorsal view. 8. The 4th flagellomere, lateral view. 9. Genitalia, ventral view. 10. Apex of foretibia, prolateral view. 11. Palpus, lateral view. 12. Left gonostylus, ventral view. Scale bars: 7 = 1.0 mm; 8–12 = 0.1 mm.
Figure 1 in DNA barcoding of the genus Dichopygina, with a new species from China (Diptera: Sciaridae)
Figure 1. Neighbor Joining (NJ) tree of Dichopygina species COI gene. The alignment was performed based on the Kimura twoparameter (K2P) model, with substitutions of transitions and transversions. Each sequence is numbered by its BOLD process ID, with voucher materials in Table 1. The habitus photo is Dichopygina tibetana Leng, Heller & Huang, sp. nov.
Fig. 11 in PhyloCode und DNA Barcoding - Taxonomische Regeln und Techniken im Wandel?
Fig. 11: Beispiel für die Verwendung des mitochondrialen Cytochrom c - Oxidase I Gens (COI) zur Identifizierung unbekannter Larven, d. h. ihrer Zuordnung zu beschriebenen Imagines, hier der Art Philodytes umbrinus (MOTSCHULSKY, 1855) Dytiscidae: Laccophilinae) (Ausschnitt eines Kladogramms auf der Basis einer Parsimony-Analyse der COI Sequenzen) (aus MILLER u. a. 2005).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.