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452 results for “Mitogenomics”
Figure 9 from: Yi M-R, Hsu K-C, Gu S, He X-B, Luo Z-S, Lin H-D, Yan Y-R (2022) Complete mitogenomes of four Trichiurus species: A taxonomic review of the T. lepturus species complex. ZooKeys 1084: 1-26. https://doi.org/10.3897/zookeys.1084.71576
Figure 9 Frequencies of different amino acids in the mitogenomes of the five Trichiurus species; the stop codon is not included.
Figure 10 from: Yi M-R, Hsu K-C, Gu S, He X-B, Luo Z-S, Lin H-D, Yan Y-R (2022) Complete mitogenomes of four Trichiurus species: A taxonomic review of the T. lepturus species complex. ZooKeys 1084: 1-26. https://doi.org/10.3897/zookeys.1084.71576
Figure 10 . The mean partwise interspecific (gray) and intergeneric (black) p-distance in each gene.
Figure 8 from: Yi M-R, Hsu K-C, Gu S, He X-B, Luo Z-S, Lin H-D, Yan Y-R (2022) Complete mitogenomes of four Trichiurus species: A taxonomic review of the T. lepturus species complex. ZooKeys 1084: 1-26. https://doi.org/10.3897/zookeys.1084.71576
Figure 8 Relative synonymous codon usage (RSCU) of the mitogenomes of the five Trichiurus species; the stop codon is not included. T. japonicus (TJ), T. lepturus (TL), T. nanhaiensis (TN), T. gangeticus (TG) and T. brevis (TB).
Figure 7 from: Yi M-R, Hsu K-C, Gu S, He X-B, Luo Z-S, Lin H-D, Yan Y-R (2022) Complete mitogenomes of four Trichiurus species: A taxonomic review of the T. lepturus species complex. ZooKeys 1084: 1-26. https://doi.org/10.3897/zookeys.1084.71576
Figure 7 A Mean evolutionary rates for each protein coding gene in mitogenomes of five Trichiurus species B Evolutionary rates of ND6 gene of five Trichiurus species. C Evolutionary rates of Ka/Ks in ATP8 gene of five Trichiurus species. Indicated the rates of non-synonymous substitutions to the rate of synonymous substitutions (ka/ks). T. japonicus (TJ), T. lepturus (TL), T. nanhaiensis (TN), T. gangeticus (TG) and T. brevis (TB).
Figure 2 from: Yi M-R, Hsu K-C, Gu S, He X-B, Luo Z-S, Lin H-D, Yan Y-R (2022) Complete mitogenomes of four Trichiurus species: A taxonomic review of the T. lepturus species complex. ZooKeys 1084: 1-26. https://doi.org/10.3897/zookeys.1084.71576
Figure 2 Positions of 14 (a–n) landmarks used to contrast the morphological differences between Trichiurus species.
Figure 9 from: Chen Z-T (2022) Comparative mitogenomic analysis of two earwigs (Insecta, Dermaptera) and the preliminary phylogenetic implications. ZooKeys 1087: 105-122. https://doi.org/10.3897/zookeys.1087.78998
Figure 9 Predicted structural elements in the control regions of Challia fletcheri, Euborellia arcanum, Eudohrnia metallica, and Paratimomenus flavocapitatus.
Figure 4 from: Chen Z-T (2022) Comparative mitogenomic analysis of two earwigs (Insecta, Dermaptera) and the preliminary phylogenetic implications. ZooKeys 1087: 105-122. https://doi.org/10.3897/zookeys.1087.78998
Figure 4 Evolutionary rates of PCGs in six species of earwigs. The bar indicates each gene's Ka/Ks value.
Figure 5 from: Chen Z-T (2022) Comparative mitogenomic analysis of two earwigs (Insecta, Dermaptera) and the preliminary phylogenetic implications. ZooKeys 1087: 105-122. https://doi.org/10.3897/zookeys.1087.78998
Figure 5 Secondary structures of tRNA genes in the mitogenome of Apachyus feae. Mismatched base pairs are indicated by red circles; reduced arms are indicated by red arrowheads.
Figure 6 from: Chen Z-T (2022) Comparative mitogenomic analysis of two earwigs (Insecta, Dermaptera) and the preliminary phylogenetic implications. ZooKeys 1087: 105-122. https://doi.org/10.3897/zookeys.1087.78998
Figure 6 Secondary structures of tRNA genes in the mitogenome of Diplatys flavicollis. Mismatched base pairs are indicated by red circles; reduced arms are indicated by red arrowheads.
Figure 1 from: Chen Z-T (2022) Comparative mitogenomic analysis of two earwigs (Insecta, Dermaptera) and the preliminary phylogenetic implications. ZooKeys 1087: 105-122. https://doi.org/10.3897/zookeys.1087.78998
Figure 1 Mitochondrial maps of Apachyus feae and Diplatys flavicollis. Genes outside the map are transcribed clockwise, whereas those inside the map are transcribed counterclockwise. Names and other details of the genes are listed in Tables 2 and 3. The inside circles show the GC content and the GC skew. GC content and GC skew are plotted as the deviation from the average value of the entire sequence.
Figure 10 from: Chen Z-T (2022) Comparative mitogenomic analysis of two earwigs (Insecta, Dermaptera) and the preliminary phylogenetic implications. ZooKeys 1087: 105-122. https://doi.org/10.3897/zookeys.1087.78998
Figure 10 Phylogenetic relationships within Dermaptera inferred by Bayesian inference and maximum likelihood analysis. Numbers at the nodes are posterior probabilities (left) and bootstrap values (right). The family names are listed after the species. Infraorders and parvorders are indicated below each family name.
Mitogenomics dataset for the Rasborinae of Sundaland
<p class="CxSpFirst"><b>Aim:</b> Eustasy has long been put forward to explain the colonization of Southeast Asian islands by freshwater aquatic organisms. We examined the relative impact of Sundaland geology since the Oligocene and of Pleistocene Eustatic Fluctuations on the mitochondrial lineage diversification of a species-rich subfamily of Cypriniformes fishes widely distributed in Southeast Asia, the Rasborinae. We specifically tested if variations in the extent of exposed lands and island connectivity during Pleistocene eustasy (the Paleoriver hypothesis) induced bursts of diversification.</p> <p class="CxSpMiddle"><b>Location:</b> Sundaland</p> <p class="CxSpMiddle"><b>Taxon:</b> Rasborinae (Actinopterygii, Cypriniformes, Danionidae)</p> <p class="CxSpMiddle"><b>Methods:</b> We aggregated 1,017 cytochrome oxidase I sequences and 79 mitogenomes to delineate Molecular Operational Taxonomic Units (MOTUs) and further reconstruct a time-calibrated phylogeny of Rasborinae. Ancestral area estimations were conducted using both island and paleoriver partitioning to examine the impact of island connectivity during Pleistocene eustasy on dispersal. Temporal trends of diversification are explored through a model-based approach.</p> <p class="CxSpMiddle"><b>Results:</b> The origin of Sundaland mitochondrial lineages is dated at <i>ca.</i> 33 Ma and four major clades are identified, which diversified between <i>ca.</i> 31 and 22 Ma. The Island of Borneo and North Sunda paleoriver are identified as the source of Sundaland Rasborinae. Geographical patterns of lineage divergence indicate that most divergence events occurred within islands and diversification under constant birth rate models are the most likely for all clades.</p> <p class="CxSpMiddle"><b>Conclusions:</b> The geographical and historical context of diversification of mitochondrial lineages in Rasborinae provides little support for the Paleoriver Hypothesis. The onset of isolation of Borneo from mainland Asia triggered the initial diversification of the group (<i>ca.</i> 31-22 Ma). The late colonization of Java and Sumatra occurred through several independent dispersal events, poorly explained by Pleistocene eustasy, and frequently followed by <i>in situ</i> diversification.</p>
Supplementary material 6 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Figure S6
Supplementary material 2 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Figure S2
Supplementary material 1 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Figure S1
Supplementary material 5 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Figure S5
Supplementary material 9 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Table S3
Supplementary material 7 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Table S1
Supplementary material 8 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Table S2
Supplementary material 4 from: Yang C, Du X, Liu Y, Yuan H, Wang Q, Hou X, Gong H, Wang Y, Huang Y, Li X, Ye H (2022) Comparative mitogenomics of the genus Motacilla (Aves, Passeriformes) and its phylogenetic implications. ZooKeys 1109: 49-65. https://doi.org/10.3897/zookeys.1109.81125
Figure S4
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.