Skip to main content
Powered by ShareScore

Find research datasets worth reusing

Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.

894

datasets available to search

ShareScore release 0.9.0

Reset

Dataset results

894 results for “Single-cell RNA-seq”

Learn how ShareScore rates datasets ↗
geo24/100

Single-cell transcriptomic analysis reveals lineage hierarcies and communications for second heart lineage deployment [RNA-seq]

GEO Series GSE108879. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJun 2019View details →
geo24/100

Effects of 3-HAA on HCC by regulating the heterogeneous macrophages—A single-cell RNA-seq analysis

GEO Series GSE226510. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJun 2023View details →
geo24/100

Single-cell RNA-seq of splenic Treg and Tconv cells

GEO Series GSE121034. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenOct 2018View details →
geo24/100

High-throughput and high-sensitivity full-length single-cell RNA-seq analysis on third-generation sequencing platform

GEO Series GSE203561. Homo sapiens; Mus. 8 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenNov 2022View details →
geo24/100

Nuclear oligo hashing improves differential analysis of single-cell RNA-seq

GEO Series GSE166470. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenDec 2021View details →
geo24/100

Single-Cell and Spatial Multi-Omics Reveal Mechanical Stress Driving Heterogeneous Xylem Development in Populus [LCM Spatial RNA-seq]

GEO Series GSE295131. Populus trichocarpa. 18 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJun 2025View details →
geo24/100

Precision targeting of beta-catenin induces tumor reprogramming and immunity in hepatocellular cancers [Single-cell RNA-seq GEX]

GEO Series GSE270714. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenMay 2025View details →
geo24/100

Single-cell RNA-seq of NR5A1-eGFP positive cells of the developing mouse ovary from E10.5 to P6

GEO Series GSE119766. Mus musculus. 663 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenDec 2018View details →
geo24/100

Single-cell and bulk RNA-seq of human tumor-benign prostate adenocarinoma samples

GEO Series GSE193337. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJun 2022View details →
geo24/100

Single-cell RNA-seq profiling of Pseudomyxoma Peritonei

GEO Series GSE228377. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenOct 2024View details →
geo24/100

Single-cell RNA-seq of 4T1 breast tumors from mice treated with anti-Siglec-E and/or anti-PD-1 antibodies

GEO Series GSE271964. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenAug 2025View details →
geo24/100

Single-cell RNA-seq of UVB-radiated Skin Reveals Landscape of Photoaging-related Inflammation and Protection by Vitamin D

GEO Series GSE173385. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenMay 2022View details →
geo24/100

Transcriptional profiling of ileal lamina propria lymphocytes of wild type and Lyz1KO mice by single-cell RNA-seq

GEO Series GSE151152. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenAug 2020View details →
geo24/100

Single-cell RNA-seq of PBMCs from severe COVID-19 patients

GEO Series GSE150861. Homo sapiens. 7 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJul 2020View details →
geo24/100

Single-cell RNA-seq of mouse epidermal or dermal samples

GEO Series GSE150361. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenMay 2020View details →
geo24/100

Single-cell RNA-seq of bone marrow cells from aplastic anemia patient and healthy donor

GEO Series GSE181989. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenAug 2021View details →
geo24/100

Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling [DS]

GEO Series GSE163785. Homo sapiens; Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJan 2021View details →
geo24/100

Immunel Landscape of Spinal Cord after Injury in Mice Using Single-Cell RNA-Seq

GEO Series GSE182803. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenAug 2021View details →
geo24/100

Single-cell RNA-seq of sorted E11.5 AGM HSCs

GEO Series GSE139052. Mus musculus. 335 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenMay 2022View details →
geo24/100

Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA-seq

GEO Series GSE89405. Mus musculus. 304 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.

openGEO-OpenFeb 2017View details →

ScienceDex guides

Understand access before you commit

These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record