Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
14,185
datasets available to search
ShareScore release 0.9.0
Dataset results
14,185 results for “phylogenies”
Figure 1 in A review of the lower actinopterygian phylogeny
Figure 1. Most parsimonious tree showing lettered nodes. The character transformations are given as follows. Those related to transformations along the internal branches are given in the first paragraph, those leading to the terminal taxa in the second. Against each lettered node the character number is given, followed by the character state transformation in parentheses. This is followed by the consistency index (CI) of that character in square parentheses. Synapomorphic (or autapomorphic in the case of terminal taxa) character states are preceded by asterisks. The nature of the character state change is indicated by the arrows. Double stemmed arrows indicate unambiguous character state changes, meaning that the particular change will occur under any optimization (e.g. ACCTRAN, as used here, or DELTRAN). Single stemmed arrows mean ambiguous optimization (i.e. the optimization may change if different assumptions of optimization are invoked).
Figure S1 in New Insights into the Taxonomy of Myotis Bats in China Based on Morphology and Multilocus Phylogeny
Figure S1. Phylogenetic trees reconstructed based on 123 mitochondrial Cytb haplotypes. Values on the branches represent posterior probability obtained with MrBayes (A) and bootstrap percentage obtained with IQ-TREE (B). Geometries of different colors and shapes represent Myotis species. The information on mitochondrial haplotypes was described in Table S3.
Figure 2 in New Insights into the Taxonomy of Myotis Bats in China Based on Morphology and Multilocus Phylogeny
Figure 2. Principal component analysis based on five morphological characteristics. The first two principal components explained 88.77% and 6.77% of the total variance, respectively. Geometries with different colors and shapes represent Myotis species.
Figure 4 in New Insights into the Taxonomy of Myotis Bats in China Based on Morphology and Multilocus Phylogeny
Figure 4. (A) Species tree constructed in *BEAST based on Cytb, Rag2, and Chd1 genes. Values on the branch represent posterior probability. (B) Heatmap of K2P genetic distance calculated based on mitochondrial Cytb gene (lower triangular) and concatenated nuclear genes (upper triangular). Geometries with different colors and shapes represent Myotis species and corresponds to the species on the left side.
Figure 1 in New Insights into the Taxonomy of Myotis Bats in China Based on Morphology and Multilocus Phylogeny
Figure 1. Mitochondrial phylogenetic tree reconstructed based on 123 Cytb haplotypes. Values on the branches represent posterior probability (PP) and bootstrap percentage (BP). Geometries with different colors and shapes represent Myotis species. "Initial" represents the initially filed identification or the species information labelled in GenBank. "Revised" means the revised species names. The information on mitochondrial haplotypes was described in Table S3.
Figure S2 in New Insights into the Taxonomy of Myotis Bats in China Based on Morphology and Multilocus Phylogeny
Figure S2. Phylogenetic trees reconstructed based on 20 nuclear Rag2 haplotypes (A‒B), 13 nuclear Chd1 haplotypes (C‒D), and concatenated nuclear sequences (E‒F). Values on the branches represent posterior probability obtained with MrBayes (BI) and bootstrap percentage obtained with IQ-TREE (ML). Geometries of different colors and shapes represent Myotis species. The information on nuclear haplotypes was described in Table S4.
Figure 3 in New Insights into the Taxonomy of Myotis Bats in China Based on Morphology and Multilocus Phylogeny
Figure 3. (A) Phylogenetic tree based on concatenated nuclear genes. Values on the branches represent posterior probability (PP) and bootstrap percentage (BP). (B) Species tree constructed in *BEAST based on nuclear Rag2 and Chd1 genes. Values on the branch represent posterior probability. Geometries with different colors and shapes represent Myotis species.
Fig. 6 in Morphology and Molecular Phylogeny of Pseudouroleptus jejuensis nov. spec., a New Soil Ciliate (Ciliophora, Spirotrichea) from South Korea
Fig. 6. Small subunit rRNA gene phylogeny of 31 oxytrichids based on 3 methods (NJ – Neighbor Joining; ML – Maximum Likelihood; BI – Bayesian Inference). Bootstrap values of the NJ and the ML are shown at each node with posterior probabilities of the BI; a dash denotes a value of below 0.50 (BI) or 50% (NJ and ML). Pseudouroleptus jejuensis is denoted in bold.
Figs 5A–D in Morphology and Molecular Phylogeny of Pseudouroleptus jejuensis nov. spec., a New Soil Ciliate (Ciliophora, Spirotrichea) from South Korea
Figs 5A–D. Pseudouroleptus jejuensis, late (A, B) and post-dividers (C, D) after protargol impregnation. Note that the parental dorsal bristles are shown by single dots although they are still composed of dikinetids. A, B – dorsal (A) and ventral (B) views of late divider showing caudal cirri (arrows) and posteriorly migrating postperistomial cirrus (arrowheads). Note that the caudal cirri are not developed from dorsal kinety anlage 3. C, D – dorsal (C) and ventral (D) views of post-dividers. The two post-dividers were fixed from a single dividing cell im- mediately after the complete cell division. Some of parental dorsal bristles and cirri are still observed, and postperistomial (arrowheads) and caudal cirri (arrows) migrate forward to their final position. 3–5 – dorsal kineties 3–5. Scale bars: 150 μm.
Figs 4A–D in Morphology and Molecular Phylogeny of Pseudouroleptus jejuensis nov. spec., a New Soil Ciliate (Ciliophora, Spirotrichea) from South Korea
Figs 4A–D. Pseudouroleptus jejuensis, middle (A, B) and late divider (C, D) after protargol impregnation. Note that the parental dorsal bristles are shown by single dots although still composed of dikinetids. The parental dorsal dikinetids become smaller and are less impregnated than newly developed one. A, B – dorsal (A) and ventral (B) views of middle divider showing dorsal kineties and cirral anlagen. C, D – dorsal (C) and ventral (D) views of late divider showing dorsal kinety 3 fragmentation (double arrowheads). Note that caudal cirri are developed at posterior end of kineties 1, 2 only (arrows). Postperistomial cirrus (arrowheads) is originated from the anlage IV and split from anterior part of the anlage. IV–VI – cirral anlagen IV–VI. Scale bars: 150 μm.
Figs 1A–F in Morphology and Molecular Phylogeny of Pseudouroleptus jejuensis nov. spec., a New Soil Ciliate (Ciliophora, Spirotrichea) from South Korea
Figs 1A–F. Pseudouroleptus jejuensis from life (A–D) and after protargol impregnation (E, F). A – ventral view of a representative specimen, arrow indicates contractile vacuole; B, C – arrangement of cortical granules on dorsal side (B) and optical section (C); D – ventral view of a specimen gliding for feed, showing a slightly curved body shape; E, F – dorsal (E) and ventral views (F) of the holotype specimen. Arrow in F denotes postperistomial ventral cirrus. AZM – adoral zone of membranelles, BC – buccal cirrus, CC – caudal cirri, 1–5 – dorsal kineties 1–5, EM – endoral membrane, G – cortical granules, LFVR – left frontoventral row, LMR – left marginal row, PM – paroral membrane, RFVR – right frontoventral row, RMR – right marginal row. Scale bars: 100 μm.
Figs 3A–J in Morphology and Molecular Phylogeny of Pseudouroleptus jejuensis nov. spec., a New Soil Ciliate (Ciliophora, Spirotrichea) from South Korea
Figs 3A–J. Pseudouroleptus jejuensis during interphase (A–D, G–I) and ontogenesis (E, F, J) after protargol impregnation. A–C – dorsal view (A) and ventral views (B, C), arrow indicates postperistomial cirrus; D – dorsal view showing basal bodies (asterisks) in dorsal kinety 4; E, F – dorsal views of late dividers, asterisks denote dorsal kinety 4 developed by multiple fragmentation of dorsal kinety anlage (DKA) 3; G, H, J – dorsal views showing caudal cirri developed from DKA 1, 2 while DKA 3 does not participate in the formation of these caudal cirri during ontogenesis; I – ventral view showing macronuclear nodules and micronuclei. CC – caudal cirri, MA – macronuclear nodules, MI – micronuclei. Scale bars: 100 μm.
FIGURE 3 Holotype NMNS-8130-001 in Phylogeny of two new pheronematid sponges from the Caroline Seamount and South China Sea
FIGURE 3 Holotype NMNS-8130-001 of Pheronemoides curvipentactin sp. nov. A, the external morphology of dermal areas (scale bar = 5 cm); B, the external morphology of atrial areas.
FIGURE 4 in Phylogeny of two new pheronematid sponges from the Caroline Seamount and South China Sea
FIGURE 4 Spicules of holotype NMNS-8130-001 of Pheronemoides curvipentactin sp. nov. A, choanosomal pentactin; B–C, dermal pinular pentactins; D–H, atrialia: D–E, pinular pentactins; F, crooked pentactin; G–H, special pentactins; I, shaft of macrouncinate; J, microuncinate; K, shaft of microuncinate; L, terminal of microuncinate; M, micramphidisc; N, microdiactin; O–Q, the anchor of basalia; R–S; marginalia.
FIGURE 5 in Phylogeny of two new pheronematid sponges from the Caroline Seamount and South China Sea
FIGURE 5 Bayesian inference trees of pheronematid species based on the 16S rDNA and 28S rDNA sequence data. Numbers at each node are Bayesian posterior probabilities (left) and ML analysis bootstrap values (right).
FIGURE 1 Holotype MBM286618 in Phylogeny of two new pheronematid sponges from the Caroline Seamount and South China Sea
FIGURE 1 Holotype MBM286618 of Pheronemoides crustiformis sp. nov. A, photograph showing the specimen in its natural habitat; B, the external morphology of atrial areas; C, the external morphology of dermal areas and basalia; D, mesh structure of dermal areas; E, mesh structure of atrial areas.
FIGURE 2 in Phylogeny of two new pheronematid sponges from the Caroline Seamount and South China Sea
FIGURE 2 Spicules of holotype MBM286618 of Pheronemoides crustiformis sp. nov. A, choanosomal pentactin; B, the anchor of basalia; C, atrial pinular pentactin; D, dermal pinular pentactin; E–G, micramphidiscs; H, microdiactin I; I, microdiactin II; J, shaft of macrouncinate; K, shaft of mesouncinate; L–N, Sceptre; O–P, the anchor of basalia.
Figure 1 in Mitochondrial genomes of four pierid butterfly species (Lepidoptera: Pieridae) with assessments about Pieridae phylogeny upon multiple mitogenomic datasets
Figure 1. Circular map of Baltia butleri, Talbotia naganum, Pontia callidice, Pontia daplidice mitochondrial genome. COI, COII, and COIII refer to the cytochrome oxidase subunits; CytB refers to cytochrome B; ATP6 and ATP8 refer to subunits 6 and 8 of F0 ATPase; ND1-6 refers to the components of NADH dehydrogenase. The tRNAs locations are marked by the color blocks and labeled by the IUPAC-IUB single letter amino acid code. L1, L2, S1, and S2 denote tRNALeu (CUN), tRNALeu (UUR), tRNASer (AGN), and tRNASer (UCN), respectively. The non-underlined genes are transcribed on the majority strand whereas the underlined genes are transcribed on the minority strand.
Figure 16 in Mitochondrial genomes of four pierid butterfly species (Lepidoptera: Pieridae) with assessments about Pieridae phylogeny upon multiple mitogenomic datasets
Figure 16. Bayesian inference (BI) and Maximum likehood (ML) phylogenetic trees inferred from mitochondrial genomes of pierid family based on 22tRNA genes.
Figure 3 in Mitochondrial genomes of four pierid butterfly species (Lepidoptera: Pieridae) with assessments about Pieridae phylogeny upon multiple mitogenomic datasets
Figure 3. Relative Synonymous Codon Usage (RSCU) of the four pierid butterfly mitogenomes newly determined in this study.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.