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3,655 results for “Structural data”
Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights
GEO Series GSE34306. Saccharomyces cerevisiae; synthetic construct. 27 samples. Type: Other.
Global transcript structure resolution of high gene density genomes through multi-platform data integration: deepCAGE
GEO Series GSE79293. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Structural, functional and molecular analysis of the effects of aging in the small intestine and colon of C57BL/6J mice [Colon data]
GEO Series GSE39973. Mus musculus. 4 samples. Type: Expression profiling by array.
Global transcript structure resolution of high gene density genomes through multi-platform data integration: Iso-Seq
GEO Series GSE79335. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing; Other.
Affymetrix SNP array data for Genetic Structure of the Newfoundland Population samples
GEO Series GSE74392. Homo sapiens. 442 samples. Type: Genome variation profiling by genome tiling array; Genome variation profiling by SNP array.
Expression data from induced pluripotent stem cell-derived crypt-villus structural small intestine
GEO Series GSE291253. Homo sapiens. 4 samples. Type: Expression profiling by array.
Expression data from Aspergillus niger comparing aerial structures with vegetative mycelium
GEO Series GSE32123. Aspergillus niger; Aspergillus niger CBS 513.88. 6 samples. Type: Expression profiling by array.
Underlying Data: Population structure of Salmonella serotype Mbandaka
<p>This project contains supplementary data associated with the project.</p>
Data from the manuscript: Machine learning reveals structural characteristics of stereochemistry-specific interdigitation of synthetic monomycoloyl glycerol analogs
<h2>Four membrane configurations:</h2> <p>1. single = single bilayer (512 MMG molecules and 25600 water molecule) <br>2. db_large = large double bilayer (1024 MMG molecules and 51200 water molecules)<br>3. id_small = interdigitated double bilayer (256 MMG molecules and 12800 water molecules)<br>4. db_small = small double bilayer (256 MMG molecules and 12800 water molecules)</p> <p>Each membrane configuration has 2 different MMG analogs:</p> <p><br>1. MMG1 = MMG-1, 1:1 racemic mixture of stereoisomers with (2R,3S)/(2S,3R) configurations<br>2. MMG6 = MMG-6, 1:1 racemic mixture of stereoisomers with (2R,3R)/(2S,3S) configurations</p> <h2>File names:</h2> <p><br>Each trajectory folder contains starting structures, input structure files, trajectory, energy file and system topology file.<br>Additionally, the .mdp files and topologies are located in their own folders.</p> <p>- start.gro = starting structure before energy minimization**<br>- eq.gro = input structure file for production<br>- eq.cpt = equilibration checkpoint file<br>- run.gro = final frame structure file<br>- run.cpt = production checkpoint file<br>- run.tpr = production tpr file <br>- run.xtc = production trajectory file, final 500 ns<br>- run.edr = production energy file, final 500 ns</p> <p>the <em>db_large</em> system is built with equilibrated <em>db_small</em> system, hence the starting structure is before the equilibration.</p> <h2>MDP-files:</h2> <p><br>Molecular dynamics parameter files can be found in their own folder (05_mdps/). Files for energy minimization,<br>equilibration and production run are provided.</p> <p>- em1_charmm36.mdp = 1st energy minimization (for all systems)<br>- em_charmm36.mdp = 2nd energy minimization (for all systems)<br>- eq1_noposres_charmm36.mdp = equilibration without position restraints (for single)<br>- eq1_posresin_charmm36.mdp = equilibration with O1 atoms constrained in Z-direction (for db_large, id_small, db_small)<br>- production_charmm36.mdp = production run (for all systems)</p> <h2>Topologies and position restraint files:</h2> <p><br>System topologies for each MMG analog can be found in their own folders (06_top/MMG1/, 06_top/MMG6/). <br>Molecular topologies, forcefield parameters and position restraint files can be found from their respective folders (06_top/MMG1/topol/, 06_top/MMG6/topol/).</p> <h3>MMG-1:</h3> <p><br>- db_large-MMG1.top = MMG-1 large double-bilayer system<br>- db_small-MMG1.top = MMG-1 small systems: interdigitated and non-interdigitated double bilayers <br>- single-MMG1.top = MMG-1 single bilayer system<br>- forcefield.itp = force field parameters<br>- TIP3_CHARMM36.itp = water model<br>- MMG1_2R3S_outer.itp = outer leaflet 2R3S MMG-1 <br>- MMG1_2S3R_outer.itp = outer leaflet 2S3R MMG-1 <br>- MMG1_2R3S_inner.itp = inner leaflet 2R3S MMG-1<br>- MMG1_2S3R_inner.itp = inner leaflet 2S3R MMG-1<br>- posres_MMG1_tail_z.itp = position restraints on MMG tails in z-direction<br>- posres_MMG1_O1_z.itp = position restraints on MMG headgroup O1 atom in z-direction</p> <h3>MMG-6:</h3> <p><br>- db_large-MMG6.top = MMG-6 large double-bilayer system<br>- db_small-MMG6.top = MMG-6 small systems: interdigitated and non-interdigitated double bilayers<br>- single-MMG6.top = MMG-6 single bilayer system<br>- forcefield.itp = force field parameters<br>- TIP3_CHARMM36.itp = water model<br>- MMG6_2S3S_outer.itp = outer leaflet 2S3S MMG-6 <br>- MMG6_2R3R_outer.itp = outer leaflet 2R3R MMG-6<br>- MMG6_2S3S_inner.itp = inner leaflet 2S3S MMG-6<br>- MMG6_2R3R_inner.itp = inner leaflet 2R3R MMG-6 <br>- posres_MMG6_tail_z_2R3R.itp = position restraints on tails in z-direction <br>- posres_MMG6_tail_z_2S3S.itp = position restraints on tails in z-direction<br>- posres_MMG6_O1_z.itp = position restraints on MMG headgroup O1 atom in z-direction</p>
The soil microbiome contributes to the adaptation of grassland plant species to increasingly persistent precipitation regimes by inducing transcriptomic, metabolic, and structural changes: Extra Data
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Data from: Extensive intraspecific gene order and gene structural variations in upland cotton cultivars
[No abstract entered]
Data from: Effects of large-scale releases on the genetic structure of red sea bream (Pagrus major, Temminck et Schlegel) populations in Japan
[No abstract filled]
Optional data for R-package from publication: "fsbrain: an R package for the visualization of structural neuroimaging data"
<p>This is the optional data that be downloaded from within the R packages 'freesurferformats' and 'fsbrain'. See publication: https://doi.org/10.1101/2020.09.18.302935</p> <p> </p> <p>Due to CRAN limits, this data cannot be stored in the package. The author therefore stores this on a private server, which is not optimal. This uploads serves as a backup and an alternate way to access the data, e.g., for future maintainers of the software.</p> <p>Note that the files in directories 'subjects_dir/fsaverage' and 'subjects_dir/fsaverage3' are part of FreeSurfer6 and distributed under the FreeSurfer license.</p>
Household survey and Urban Structure Type (UST) data for the city of Berlin, Germany
<p>An overview of the household survey data conducted in 39 selected planungsräume or planning areas (PLRs) in Berlin and its link with spatial datasets i.e., urban structure types (USTs) are provided in this document. </p>
Household survey data linked to Urban Structure Type (UST) for the city of Stuttgart, Germany
<p><span>An overview of the household survey data conducted at Stadtteile scale in the city of Stuttgart and its link with spatial datasets i.e., urban structure types (USTs) are provided in this document. </span></p>
Massive Compression for High Data Rate Macromolecular Crystallography: Impact on Diffraction Data and Subsequent Structural Analysis
<p>This is a dataset containing raw "uncompressed" diffraction data from test sample.</p> <p>Data are collected on a lysozyme sample at 7.5 keV for a S-SAD experiment at the AMX beamline using an EIGEr 9M detector.</p> <p>The compression used, to generate the cbf files can be derived from the filenames: </p> <p>BINx: pixel binning by a factor x</p> <p>SUMx: frame summing by a factor x </p> <p>J2Kx: JPEG2000 compression used with a factor of x</p> <p>HCOMx: Hcompress used with a scale factor x </p> <p>For example: lyso_BIN2_SUM2_HCOMP4 was compressed using 2x pixel binning + 2x frame summing + Hcompress with scale of 4. </p> <p>More information will be included after publication, in the meantime, please contact author if details about processing are required.</p> <p>All zstd tar directories contain the cbf files, ready to be processed. </p> <p>All data were collected at the AMX beamline at the NSLS-II using a DECTRIS EIGER X 9 M detector. </p>
FIGURE 14. Asperaxis karenae n. gen., n in New subfamilies and a new genus and species of Melithaeidae (Coelenterata: Octocorallia: Alcyonacea) with comparative data on the structure of both melithaeid and subergorgiid axes
FIGURE 14. Asperaxis karenae n. gen., n. sp., holotype, tentacular sclerites: A, rachis; B, base of pinnules.
FIGURE 1. Asperaxis karenae n. gen., n in New subfamilies and a new genus and species of Melithaeidae (Coelenterata: Octocorallia: Alcyonacea) with comparative data on the structure of both melithaeid and subergorgiid axes
FIGURE 1. Asperaxis karenae n. gen., n. sp., holotype NTM C14986 & paratype NTM C13575, in situ with a colony of the bryozoan Triphyllozoon floribundum (photo: K. GowlettHolmes).
mRNA expression data from keratinocytes with disorganized lipid raft structures (by cholesterol depletion by methyl-beta-cyclodextrin)
GEO Series GSE21364. Homo sapiens. 9 samples. Type: Expression profiling by array.
Data from: Effects of large-scale releases on the genetic structure of red sea bream (Pagrus major, Temminck et Schlegel) populations in Japan
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.