Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Immunosuppressive tumor microenvironment of osteosarcoma [Spatial transcriptomics]
GEO Series GSE299025. Homo sapiens. 2 samples. Type: Other.
DeCAF redefines fibroblast states uncovering multidimensional tumor-stroma relationships driving clinical tumor progression and immunotherapy response [Spatial Transcriptomics]
GEO Series GSE311783. Homo sapiens. 7 samples. Type: Other.
Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA
GEO Series GSE230780. Gallus gallus. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial epigenome-transcriptome co-profiling of mammalian tissues
GEO Series GSE205055. Homo sapiens; Mus musculus. 22 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics
GEO Series GSE260801. Mus musculus. 25 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen [Spatial transcriptomics]
GEO Series GSE245110. Mus musculus. 4 samples. Type: Other.
Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients
GEO Series GSE274103. Homo sapiens. 5 samples. Type: Other.
Spatial transcriptomics analysis identifies a unique tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.
GEO Series GSE250636. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial Multimodal Analysis: MALDI-MSI and Spatial Transcriptomics within the same tissue section
GEO Series GSE232910. Mus musculus; Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing; Other.
Single nuclear RNA sequencing and 10X spatial transcriptomic profiling of murine tumors initiated by transplantation of engineered prostate organoids [snRNA-seq]
GEO Series GSE246768. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Spatial epigenome-transcriptome co-profiling of mammalian tissues [Human ATAC-Seq]
GEO Series GSE205180. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial Transcriptomics of Human Cardiac Tissue
GEO Series GSE135805. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Spatial Transcriptomics correlated Electron Microscopy
GEO Series GSE202638. Mus musculus; synthetic construct. 1335 samples. Type: Expression profiling by high throughput sequencing; Other.
Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC [scRNA-Seq]
GEO Series GSE278688. Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing.
METI: Deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics
GEO Series GSE246011. Homo sapiens. 7 samples. Type: Other.
Spatial Transcriptomics in Bone Mechanomics: Exploring the Mechanoregulation of Fracture Healing in the Era of Spatial Omics.
GEO Series GSE263658. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Single cell and spatial transcriptomics analysis of kidney double negative T lymphocytes in normal and ischemic mouse kidneys [spatial transcriptomics]
GEO Series GSE233512. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptome analysis of gastric cancer which GAN-KP transplanted C57BL/6J mouse
GEO Series GSE186290. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Perturb-map coupled with spatial transcriptomics identifies mutation associated gene signatures in a mouse model of lung adenocarcinoma
GEO Series GSE193460. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptome profiling by MERFISH reveals fetal liver hematopoietic stem cell niche architecture [scRNA-seq]
GEO Series GSE172127. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.