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Fig. 3 in Integrating UCE Phylogenomics With Traditional Taxonomy Reveals a Trove of New World Syscia Species (Formicidae: Dorylinae)
Fig. 3. Variation in Syscia profiles and pilosity. (A) AIII in dorsal view trapezoidal, with convex sides. (B) AIII in dorsal view weakly trapezoidal, with convex sides. (C) AIII in dorsal view trapezoidal, with flat sides. (D) AIV in dorsal view, with convex sides, anterior margin not truncate. (E) AIV in dorsal view, with convex sides, anterior margin moderately truncate. (F) AIV in dorsal view, with nearly flat sides, anterior margin strongly truncate. (G) AIII dorsal profile strongly convex. (H) AIII dorsal profile weakly convex. (I) AIII dorsal profile flat. (J) AIV dorsal profile convex. (K) AIV dorsal profile weakly convex. (L) AIV dorsal profile flat. (A, B, G, J) Standing pilosity long, coarse. (C, H, K) Standing pilosity of medium length and thickness. (I, L) Standing pilosity short, fine.
Fig. 13 in Integrating UCE Phylogenomics With Traditional Taxonomy Reveals a Trove of New World Syscia Species (Formicidae: Dorylinae)
Fig. 13. Distribution map, face view, lateral view of petiole-AIV, and dorsal view of AIII-AIV of Syscia latepunctata (holotype worker), S. borowieci (holotype worker), S. volucris (holotype worker), S. JTL076 (queen, CASENT0614221),S. JTL064 (worker, CASENT0631661), S. JTL033 (worker, CASENT0611831),S. grandis (holotype worker), and S. JTL003 (worker, INB0003213589). Species are in order of mean HW, which is shown in the lower left of the distribution map. Scale bars 0.2 mm. On distribution maps, red dots are sites with UCE sequence data. Red boxes are type locality.
Fig. 9 in Integrating UCE Phylogenomics With Traditional Taxonomy Reveals a Trove of New World Syscia Species (Formicidae: Dorylinae)
Fig. 9. Distribution map, face view, lateral view of petiole-AIV, and dorsal view of AIII-AIV of Syscia pervagata (holotype worker), S. peten (holotype worker), S. JTL074 (worker, MCZ-ENT00511564), S. brachyptera (holotype worker), S. valenzuelai (holotype worker), S. JTL071 (worker, FMNHINS0000095759), S. quisquillis (holotype worker), S. sumnichti (holotype worker), S. JTL060 (worker, CASENT0644220), and S. JTL085 (worker, CASENT0602939). Scale bars 0.2 mm. Species are in order of mean HW, which is shown in the lower left of the distribution map. On distribution maps, red dots are sites with UCE sequence data. Red boxes are type locality.
Fig. 2 in Integrating UCE Phylogenomics With Traditional Taxonomy Reveals a Trove of New World Syscia Species (Formicidae: Dorylinae)
Fig. 2. Variation in Syscia subpetiolar process. (A) Subtriangular with flat to concave posterior margin. (B) Subtriangular with convex posterior margin. (C) Subtriangular with small tooth on posterior margin. (D) Subquadrate. (E) Subtriangular with large acute tooth on posterior margin. F. With fenestra and notch on posterior margin.
Fig. 4 in Integrating UCE Phylogenomics With Traditional Taxonomy Reveals a Trove of New World Syscia Species (Formicidae: Dorylinae)
Fig. 4. Illustrations of Syscia measurements. HL: head length, HW: head width, MSL: mesosoma length, AIIIL: abdominal tergite III length, AIIIW: abdominal tergite III width, AIVL: abdominal tergite IV length, AIIVW: abdominal tergite IV width.
Fig. 12 in Integrating UCE Phylogenomics With Traditional Taxonomy Reveals a Trove of New World Syscia Species (Formicidae: Dorylinae)
Fig. 12. Distribution map, face view, lateral view of petiole-AIV, and dorsal view of AIII-AIV of Syscia tolteca (lectotype worker), S. atitlana (holotype worker), S. lacandona (holotype worker), S. JTL049 (worker, CASENT0644222), S. JTL065 (worker, CASENT0602939), S. amblyogyna (holotype worker), S. ticomontana (holotype worker), S. JTL017 (worker, INB0003693097), S. JTL079 (worker, CASENT0642985), and S. transisthmica (holotype worker). Species are in order of mean HW, which is shown in the lower left of the distribution map. Scale bars 0.2 mm. On distribution maps, red dots are sites with UCE sequence data. Red boxes are type locality (not shown for S. tolteca, with type locality 'Guatemala').
Fig. 8 in Integrating UCE Phylogenomics With Traditional Taxonomy Reveals a Trove of New World Syscia Species (Formicidae: Dorylinae)
Fig. 8. Distribution map, face view, lateral view of petiole-AIV, and dorsal view of AIII-AIV of Syscia minuta (holotype worker), S. parva (holotype worker), S. JTL067 (worker, CASENT0644012), S. pollula (holotype worker), S. JTL069 (worker, CASENT0644008), S. JTL068 (queen, CASENT0613276), S. austrella (holotype worker), S. JTL037 (worker, CASENT0635747), S. quisquillis Arizona form (worker, FMNHINS0000095772), and S. boudinoti (holotype worker). Species are in order of mean HW, which is shown in the lower left of the distribution map. Scale bars 0.1 mm for S. minuta to S. JTL037, 0.2 mm for S. quisquillis Arizona form and S. boudinoti. On distribution maps, red dots are sites with UCE sequence data. Red boxes are type locality.
Structural implications of traditional agricultural landscapes on the functional diversity of birds near the Korean Demilitarized Zone
<p><span>Bird assemblages are sensitive to changes in landscape composition and the environment, such as those that result from drought. In this study, the relationship between landscape composition and avian functional diversity in traditional agricultural ecosystems in the Civilian Control Zone (CCZ) of Korea was examined. In addition, the resilience of biodiversity to changes in landscape elements resulting from drought conditions was investigated. The traditional agricultural landscape (TAL) of the sites studied was divided into three types: TAL 1 had a high proportion of rice paddies, TAL 2 included large forest areas, and TAL 3 represented areas with drylands. Of these, TAL 1 showed the highest species richness and functional richness, but these measures were most vulnerable to drought. Meanwhile, TAL 2 showed that the bird communities were more tolerant under drought event. This study shows that to conserve and enhance the diversity of birds in traditional agricultural landscapes of Northeast Asia, active management of forest areas is needed to protect bird populations. In addition, commercial pressures to develop this area will require urgent biodiversity conservation plans to protect the unique biodiversity of the Korean CCZ. This study thus provides landscape management guidance for conservation planning.Bird assemblages are sensitive to changes in landscape composition and the environment, such as those that result from drought. In this study, the relationship between landscape composition and avian functional diversity in traditional agricultural ecosystems in the Civilian Control Zone (CCZ) of Korea was examined. In addition, the resilience of biodiversity to changes in landscape elements resulting from drought conditions was investigated. The traditional agricultural landscape (TAL) of the sites studied was divided into three types: TAL 1 had a high proportion of rice paddies, TAL 2 included large forest areas, and TAL 3 represented areas with drylands. Of these, TAL 1 showed the highest species richness and functional richness, but these measures were most vulnerable to drought. </span>Meanwhile, TAL 2 showed that the bird communities were more tolerant under drought event. <span>This study shows that to conserve and enhance the diversity of birds in traditional agricultural landscapes of Northeast Asia, active management of forest areas is needed to protect bird populations. In addition, commercial pressures to develop this area will require urgent biodiversity conservation plans to protect the unique biodiversity of the Korean CCZ. This study thus provides landscape management guidance for conservation planning.</span></p>
Phytochemistry reflects different evolutionary history in traditional classes versus specialized structural motifs
<p>Foundational hypotheses addressing plant-insect codiversification and plant defense theory typically assume a macroevolutionary pattern whereby closely related plants have similar chemical profiles. However, numerous studies have documented variation in the degree of phytochemical trait lability, raising the possibility that phytochemical evolution is more nuanced than initially assumed. We utilize proton nuclear magnetic resonance (<sup>1</sup>H NMR) data, chemical classification, and double digest restriction-site associated DNA sequencing (ddRADseq) to resolve evolutionary relationships and characterize the evolution of secondary chemistry in the Neotropical plant clade Radula (<i>Piper</i>;<i> </i>Piperaceae). Sequencing data substantially improved phylogenetic resolution relative to past studies, and spectroscopic characterization revealed the presence of 35 metabolite classes. Metabolite classes displayed phylogenetic signal, whereas the crude <sup>1</sup>H NMR spectra featured little evidence of phylogenetic signal in multivariate tests of chemical resonances. Evolutionary correlations were detected in two pairs of compound classes (flavonoids with chalcones; <i>p</i>-alkenyl phenols with kavalactones), where the gain or loss of a class was dependent on the other's state. Overall, the evolution of secondary chemistry in Radula is characterized by strong phylogenetic signal of traditional compound classes and weak phylogenetic signal of specialized chemical motifs, consistent with both classic evolutionary hypotheses and recent examinations of phytochemical evolution in young lineages.</p>
Supplementary material 2 from: D'Cruze N, Assou D, Coulthard E, Norrey J, Megson D, Macdonald DW, Harrington LA, Ronfot D, Segniagbeto GH, Auliya M (2020) Snake oil and pangolin scales: insights into wild animal use at "Marché des Fétiches" traditional medicine market, Togo. Nature Conservation 39: 45-71. https://doi.org/10.3897/natureconservation.39.47879
Table S1. List of inferred species and their respective scientific names (assigned to each common name provided by questionnaire respondents) based on the documented presence of wild populations in Togo
Assessing social perceptions of rewilding approaches in Spain using traditional domestic livestock
<p>R data format</p>
Large carnivore conservation and traditional pastoralism: An economic analysis on the efficacy of bear-reindeer predation mitigation measures: Dataset for 2014–2016 corralling versus forest treatment analysis
<p>While wildlife and cultural preservation goals can be either complimentary or counteractive, the goals of large carnivore conservation and traditional pastoralist lifestyles are often at odds. Livestock depredation can negatively impact the economies of livestock herders, while subsequent lethal removals contribute to local carnivore population declines. Here, we collaborated with two Sámi reindeer herding communities (2010–2016) situated in Sweden's boreal forest to evaluate the efficacy and economic feasibility of three brown bear predation mitigation measures: corralling pregnant reindeer during parturition, lethal bear management removals, and public bear-license hunting. Calving corrals increased survival for reindeer calves born to average-sized females by 7% to 15% and by 14% to 30% for calves born to small females. However, the realized cost of implementing calving corrals outweighed the financial gain for both our study areas (net losses ranged between €1,111 and €6,210 per calf saved from bear predation per year when using the updated 2021 calf value), as well as for almost every theoretical scenario we explored (net losses €234 and €13,995 per calf saved from bear predation). The exception was the theoretical scenario where small herding communities overlapped large bear populations, which crossed the breakeven efficacy bear/reindeer ratio of 13.5 bears/100 reindeer and had a potential net gain of €36 per saved calf. Similarly, the cost of lethal management removals of bears also outweighed the potential financial gain from saved calves, with net losses between €75 and €239 per calf. License hunting, where the hunters voluntarily incur the monetary costs of removing bears, is in most cases the only economically viable mitigation measure where the cost of mitigation did not outweigh the financial gain from increased reindeer survival. While the annual public license hunt was the most cost-effective mitigation measure, it may be less biologically effective, i.e., bear hunting occurs in the fall and reindeer parturition the following spring which leaves time for the empty niche of harvested bears to be filled by survivors. Economically and biologically effective predation mitigation measures are key for promoting coexistence, and we suggest that potential mitigation measures should be studied in collaboration with local people.</p>
China traditional music instrument dataset
<p>The FolkMusic dataset is a Chinese traditional music dataset mainly used for training instrument recognition models and performance evaluation. The dataset covers 15 traditional Chinese musical instruments, including Ba, Flute, Dongxiao, Erhu, Guqin, Guzheng, Hulusi, Liuqin, Pipa, Sanxian, Sheng, Suona, Yangqin, Zhongruan, and Falling Qin. The music clips in each instrument are saved as .mp3 files, which are recorded via two channels with a sampling rate of 44100Hz. The duration of these music clips are 3s, and a single instrument plays each music clip.</p>
TCMID: Traditional Chinese Medicine integrative database for herb molecular mechanism analysis
<p><strong>ABSTRACT: </strong>Traditional Chinese Medicines Integrated Database and the description about Chinese herbs, including English and Latin names, properties, meridians, medicinal parts, herbal effect and indication. Traditional Chinese Medicine (TCM) is a system of healthcare and healing that has been practiced for thousands of years in China. It is based on a holistic approach that views the human body and its various systems as interconnected. TCM encompasses a wide range of practices, including herbal medicine, acupuncture, massage (tui na), exercise (qigong), and dietary therapy.</p> <p><strong>Instruction: </strong></p> <p>Data was cleaned and duplicates were removed.</p> <p><strong>Inspiration: </strong>The dataset was uploaded to UBRITE for "DGR_DEPOT" summer 2023 team project</p> <p><strong>Acknowledgements: </strong>Ruichao Xue 1, Zhao Fang, Meixia Zhang, Zhenghui Yi, Chengping Wen, Tieliu Shi</p> <p>TCMID: Traditional Chinese Medicine integrative database for herb molecular mechanism analysis. Nucleic Acids Res. 2013 Jan;41(Database issue):D1089-95. doi: 10.1093/nar/gks1100. Epub 2012 Nov 29. PMID: 23203875; PMCID: PMC3531123.</p> <p><strong>U-BRITE LAST UPDATED June 19, 2023</strong></p>
Fig. 21 in Euphorbia ebracteolata Hayata (Euphorbiaceae): A systematic review of its traditional uses, botany, phytochemistry, pharmacology, toxicology, and quality control
Fig. 21. Schematic of the proposed role of water extract from E. ebracteolata on anticancer (↑: increase, ↓: decrease).
Fig. 1 in Euphorbia ebracteolata Hayata (Euphorbiaceae): A systematic review of its traditional uses, botany, phytochemistry, pharmacology, toxicology, and quality control
Fig. 1. Whole plant (A), the fresh root (B) (Cited from Flora Republicae Populairs Sinicae at http://ppbc.iplant.cn), the dry root (C) and preparation (Youfuning Capsule) (D) (Cited from http://www.nj-tongrentang.com/product/1trt/89.html) of E. ebracteolata.
Fig. 6 in Transcriptomic investigation of the biochemical function of 7-dehydro- cholesterol reductase 1 from the traditional Chinese medicinal plant Anemarrhena asphodeloides Bunge
Fig. 6. Characterization of Aa7DR1 as a 7-dehydrocholesterol reductase 1 from A. asphodeloides Bunge.
Fig. 4 in Transcriptomic investigation of the biochemical function of 7-dehydro- cholesterol reductase 1 from the traditional Chinese medicinal plant Anemarrhena asphodeloides Bunge
Fig. 4. Transcriptional levels of candidate 7-DR genes involved in timosaponin biosynthesis by RT-qPCR. The characters on the X-axis indicate the roots (R), shortening stem (S) and leaves (L). The Y-axis represents the fold change in gene expression. The ubiquitin gene was used as an internal reference.
Fig. 5. 7 in Transcriptomic investigation of the biochemical function of 7-dehydro- cholesterol reductase 1 from the traditional Chinese medicinal plant Anemarrhena asphodeloides Bunge
Fig. 5. 7-dehydrocholesterol reductase (7-DR) are involved in cholesterol and phytosterol biosynthesis. CAS: cycloartenol synthase; LAS: lansterol synthase; SMT: sterol C-24 methyltransferase; SSR: sterol side chain reductase; Erg1:squalene epoxidase; Erg5: sterol C-22 desaturase; Erg4: C-24 sterol reductase.
Fig. 3 in Transcriptomic investigation of the biochemical function of 7-dehydro- cholesterol reductase 1 from the traditional Chinese medicinal plant Anemarrhena asphodeloides Bunge
Fig. 3. Content analyses of steroidal saponins (A) and phytosterols in different organs of A. asphodeloides Bunge. Corresponding histograms indicate the difference in concentration among the different organs. Three biological replicates were performed for each sample.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.