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ShareScore release 0.9.0
Dataset results
410 results for “hybrid species”
Fluorescent in situ hybridization of Mycobacterium tuberculosis rRNA species for analysis of ribosomal synthesis as a marker of bacterial growth of individual bacilli in distinct lesional microenvironments of lung granulomas from C3HeB/FeJ mice
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Interspecies hybridization versus intra-species hybridization for Leishmania promastigote RNA.
GEO Series GSE4430. Leishmania mexicana; Leishmania major. 4 samples. Type: Expression profiling by array.
Gene expression profile in the reicprocal F1 hybrids of two jewel wasp species Nasonia vitripennis and Nasonia giraulti [RNA-seq]
GEO Series GSE74300. Nasonia vitripennis x Nasonia giraulti. 6 samples. Type: Expression profiling by high throughput sequencing.
Investigating H. Influenzae Species Diversity by Comparative Genomic Hybridization
GEO Series GSE8300. Haemophilus influenzae. 84 samples. Type: Genome variation profiling by array.
Expression data for a study on cross-species hybridization on single-species microarrays
GEO Series GSE12625. Xenopus borealis; Xenopus laevis; Xenopus muelleri; Xenopus laevis x Xenopus borealis. 15 samples. Type: Expression profiling by array; Genome variation profiling by array.
Comparative genomic hybridizations of Mycobacterium avium isolates obtained from multiple host species
GEO Series GSE7622. Mycobacterium avium; Mycobacterium avium subsp. paratuberculosis; Mycobacterium avium subsp. avium. 143 samples. Type: Genome variation profiling by array.
Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae)
GEO Series GSE23095. Osmerus mordax; Salmo salar; Coregonus clupeaformis; Oncorhynchus mykiss; Oncorhynchus tshawytscha. 64 samples. Type: Expression profiling by array.
Comparison of testes gene expression of D. melanogaster species and their hybrids
GEO Series GSE3673. Drosophila melanogaster; Drosophila sechellia; Drosophila mauritiana; Drosophila simulans; Drosophila sechellia x Drosophila simulans. 22 samples. Type: Expression profiling by array.
Hybridization of human oocyte cDNA library on the multi-species oocyte array to assess for gene conservation using a temperature stringency criteria
GEO Series GSE23963. Xenopus laevis; Bos taurus; Mus musculus; Homo sapiens. 6 samples. Type: Expression profiling by array.
Data: Abiotic niche divergence of homoploid hybrid species from their progenitors
<p class="15"><span>Although more frequently reported recently than was previously expected, the role of ecology in the speciation of homoploid hybrid species (HHS) has not been quantitatively evaluated. We examined divergences in the niches of 22 assumed HHS (18 plants and four animals) from those of their progenitors using 52097 occurrences and 26 environmental factors (temperature, precipitation, altitude and soil). We identified three niche divergence patterns in HHS, niche novelty, niche contraction and niche intermediacy, by estimating niche overlap and niche breadth. Niche novelty, found in 16 HHS, is the commonest pattern, <span>in which HHS occupied new habitats and a range geographically isolated from those of the progenitors, with low niche overlap and small niche breadth. </span>Our study indicates that ecological divergence contributes greatly to the establishment of HHS and suggests that increasing habitat disturbance and the predicted climate change that may create new niches will accelerate the future production of HHS.</span></p>
Data from: Hybridization between two gartersnake species (Thamnophis) of conservation concern: A threat or an important natural interaction?
Distinguishing between hybrid zones formed by secondary contact versus parapatric divergence-with-gene-flow is an important challenge for understanding the interplay of geographic isolation and local adaptation in the origin of species. Similarly, distinguishing between natural hybrid zones and those that formed as a consequence of recent human activities has important conservation implications. Recent work has demonstrated the existence of a narrow hybrid zone between the plains gartersnake (Thamnophis radix) and Butler's gartersnake (T. butleri) in the Great Lakes region of North America, raising questions about the history and conservation value of genetically admixed populations. Both taxa are of conservation concern, and it is not clear whether to regard hybridization as a threat or a natural interaction. Here we use phylogeographic and population genetic methods to assess the timescales of divergence and hybridization, and test for evidence that the hybrid zone is of recent origin. We assayed AFLP markers and ND2 mitochondrial DNA (mtDNA) sequences from T. radix, T. butleri, and the closely related short-headed gartersnake (T. brachystoma) throughout their North American ranges. We find shallow mtDNA divergence overall and high levels of variation within the contact zone. These patterns are inconsistent with recent contact of long-diverged taxa. It is not possible to distinguish true divergence-with-gene-flow from a long-term secondary contact zone, but we infer that the hybrid zone is a long-standing, natural interaction.
data for: Hybrid breakdown is elevated near the historical cores of a species' range
<p>Data and code for the manuscript: Accumulation of hybrid incompatibilities reflects neutral genetic structure more strongly than climatic differentiation</p> <p> </p> <p>F1 and F2 fitness data from within and between population crosses of Campanula americana are in F1_fitness.xls and F2_fitness.xls files, respectively. Data used for multiple linear regression testing the effects of neutral genetic and climatic differentiation on hybrid breakdown are in multipleReg_input.xls. Prism climatic data used to calculate Mahalonobis environmental distances are in prism_annual.xls. </p> <p>Code for resampling fitness data to calculate standard deviation of hybrid breakdown within hybrid crosses is provided in 'resample_fitness.R'. Code for the mutliple linear regression is provided in 'multipleReg_code.R' and code to calculate Mahalanobis D are in 'Mahalanobis_Env_D.R'.</p>
Data from: Hybridization, species collapse, and species reemergence after disturbance to premating mechanisms of reproductive isolation
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Data from: Hybridization between two gartersnake species (Thamnophis) of conservation concern: A threat or an important natural interaction?
Open the record for dataset details and reuse information.
Data: Abiotic niche divergence of homoploid hybrid species from their progenitors
Open the record for dataset details and reuse information.
Comparison of nucleosome positioning among two yeast species and their hybrid for wild-type and deletion mutant strains
GEO Series GSE18939. Saccharomyces cerevisiae x Saccharomyces paradoxus; Saccharomyces cerevisiae; Saccharomyces paradoxus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Comparative analysis of gene expression in two yeast species and their interspecific hybrid
GEO Series GSE14708. Saccharomyces cerevisiae x Saccharomyces paradoxus; Saccharomyces cerevisiae; Saccharomyces paradoxus. 20 samples. Type: Expression profiling by array.
Determine the extent of inter-species hybridization in adult parasites.
GEO Series GSE5191. Schistosoma mansoni; Schistosoma japonicum. 4 samples. Type: Expression profiling by array.
Comparison of pure-species Drosophila expression to hybrid expression
GEO Series GSE5655. Drosophila melanogaster; Drosophila simulans x Drosophila mauritiana; Drosophila mauritiana; Drosophila sechellia; Drosophila simulans; Drosophila sechellia x Drosophila simulans. 128 samples. Type: Expression profiling by array.
Comparison of D. simulans/D. sechellia F1 male hybrid custom expression values to pure-species parents
GEO Series GSE5600. Drosophila mauritiana; Drosophila simulans; Drosophila sechellia x Drosophila simulans; Drosophila sechellia. 22 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.