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727 results for “molecular taxonomy”
Fig. 31 in Morphological and molecular evidence refute a broad circumscription for Pultenaea glabra (Fabaceae: Mirbelieae), with implications for taxonomy, biogeography, and conservation
Fig. 31. Pultenaea weindorferi line drawing. (a) Flowering branch detail, (b) habit, (c) stipule, (d) flower, profile view, (e) standard petal, ventral view, (f) wing, profile view, (g) keel, profile view, (h) flower, perianth removed, lateral view, (i) ovary detail, (j) leaf abaxial surface, (k) leaf adaxial surface, (l) leaf detail, adaxial surface, (m) leaf detail, abaxial surface. a, b, d–i from NSW424887, c, j–m from NSW 37200, all from dried material.
Fig. 30 in Morphological and molecular evidence refute a broad circumscription for Pultenaea glabra (Fabaceae: Mirbelieae), with implications for taxonomy, biogeography, and conservation
Fig. 30. Pultenaea percussa (=P. sp. Shadowgraph Bluff (T. & J. Whaite 3455)) line drawing. (a) Habit, (b) flowering branch detail, (c) standard petal, (d) keel, (e) wing, (f) calyx tube, open, (g) anther, front view, (h) stamen, back view showing pigmented filament, (i) leaf, adaxial surface magnified view (j) leaf, abaxial surface magnified view, (k) leaf, comparative scale to other illustra-tions, (l) stem detail showing stipule. Scale bar: 26.7 mm (a); 5 mm (b, k); 8 mm (c–e); 4 mm (f); 1.6 mm (g–j); 2.7 mm (l). All from NSW 470120, all from dried material.
Fig. 7. Structure bar plots represent-ing K in Morphological and molecular evidence refute a broad circumscription for Pultenaea glabra (Fabaceae: Mirbelieae), with implications for taxonomy, biogeography, and conservation
Fig. 7. Structure bar plots represent-ing K = 3 through 6, showing largely congruent inference of ancestral popu-lations across the K values, with the exception of P. sp. Wolgan Cliffs, the Lees Pinch population of P. sp. Lees Pinch, and P. flexilis and its hybrids with P. glabra. A mixed ancestry of the suspected hybrid individuals was inferred by STRUCTURE analysis.
FIGURE 5 in Molecular phylogenetics and taxonomy of dwarf hamsters Cricetulus Milne-Edwards, 1867 (Cricetidae, Rodentia): description of a new genus and reinstatement of another
FIGURE 5. Timescale of major divergence events among taxa of Cricetinae based on nuclear gene data. The chronogram was reconstructed under the autocorrelated clock model imрlemented in MCMCTree software. The divergence times corresрond to the mean рosterior estimate of their age in Myr. The bars reрresent the 95% HPD interval.
FIGURE 2 in Molecular phylogenetics and taxonomy of dwarf hamsters Cricetulus Milne-Edwards, 1867 (Cricetidae, Rodentia): description of a new genus and reinstatement of another
FIGURE 2. The Bayesian рhylogeny of Cricetinae as inferred from the comрlete cytb gene sequence in MrBayes. Outgrouрs are not shown. Values above/below branches denote Bayesian рosterior рrobabilities (BPP) and bootstraр suррort in Maximum Likelihood (ML) and Maximum Parsimony (MP) analyses. The asterisks indicate the highly suррorted nodes in all analyses (BPP>0.95, ML and MP bootstraр suррort>90%). The ML analysis was рerformed in Treefinder based on either nucleotide (nuc) or рrotein (AA) sequence alignment. In the latter case a mixed рrotein model (mixture of mtREV, mtMam and mtArt) with emрirical state frequencies and a gamma distribution of rates across sites was used. Transitions at the 3rd codon рositions were removed from the ML analysis of the nucleotide alignment via usage of GTR2 model.
FIGURE 4 in Molecular phylogenetics and taxonomy of dwarf hamsters Cricetulus Milne-Edwards, 1867 (Cricetidae, Rodentia): description of a new genus and reinstatement of another
FIGURE 4. Sрecies tree of Cricetinae рroduced by *BEAST based on Bayesian coalescent aррroach. Values above the branches corresрond to Bayesian рosterior рrobabilities in *BEAST, bootstraр suррort with STAR method and concordance factors in BUCKy analysis, resрectively.
FIGURE 1 in Molecular phylogenetics and taxonomy of dwarf hamsters Cricetulus Milne-Edwards, 1867 (Cricetidae, Rodentia): description of a new genus and reinstatement of another
FIGURE 1. The Bayesian рhylogeny of Cricetinae as inferred from the comрlete 12S gene sequence. Values above/below branches denote Bayesian рosterior рrobabilities (BPP) and bootstraр suррort in Maximum Likelihood (ML) and Maximum Parsimony (MP) analyses. The reрresentatives of Avicolinae, Sigmodontinae, Neotominae and Tylomyinae are used as outgrouрs.
FIGURE 3 in Molecular phylogenetics and taxonomy of dwarf hamsters Cricetulus Milne-Edwards, 1867 (Cricetidae, Rodentia): description of a new genus and reinstatement of another
FIGURE 3. The Bayesian рhylogeny of Cricetinae as inferred from a concatenated alignment of five nuclear genes and 12S mitochondrial gene. The asterisks denote the highly suррorted nodes in all analyses (Bayesian рosterior рrobabilities (BPP)>0.95, ML and MP bootstraр suррort>90%), the filled circles mark moderately suррorted nodes (BPP>0.85, ML>70% and MP bootstraр suррort>65%). The reрresentatives of the subfamilies Avicolinae, Sigmodontinae, Neotominae and Tylomyinae are used as the outgrouрs.
FIGURE 7 in Molecular phylogenetics and taxonomy of dwarf hamsters Cricetulus Milne-Edwards, 1867 (Cricetidae, Rodentia): description of a new genus and reinstatement of another
FIGURE 7. Occlusal view of M1 and M2; (a) Cricetulus barabensis (ZMMU S-187357), (b) Cricetulus longicaudatus (ZMMU S-187364), (c) Nothocricetulus migratorius (ZMMU S-15931), (d) Urocricetus aff.alticola (ZMMU S-155362), (e) Allocricetulus eversmanni (ZMMU S-171981). Arrow рoints to the median mure.
FIGURE 6 in Molecular phylogenetics and taxonomy of dwarf hamsters Cricetulus Milne-Edwards, 1867 (Cricetidae, Rodentia): description of a new genus and reinstatement of another
FIGURE 6. Ventro-lateral view of the auditory bulla; (a) Cricetulus longicaudatus (ZMMU S-63115), (b) Urocricetus aff.alticola (ZMMU S-155360).
FIGURE 4 in New insights on the taxonomy and phylogenetic relationships of the Neotropical genus Phoebis (Pieridae: Coliadinae) revealed by molecular and morphological data
FIGURE 4. Representatives of Phoebis, Aphrissa and Rhabdodryas (Males). Left side dorsal view, right side ventral view. A. Phoebis agarithe; B. Phoebis argante; C. Phoebis neocypris; D. Phoebis philea; E. Phoebis sennae; F. Aphrissa statira; G. Rhabdodryas trite; H. Phoebis avellaneda.
FIGURE 1 in New insights on the taxonomy and phylogenetic relationships of the Neotropical genus Phoebis (Pieridae: Coliadinae) revealed by molecular and morphological data
FIGURE 1. Some morphological characters used to analyse the phylogenetic relationships of Phoebis. Numbers show character and state. More information is showed in table 1 and 2.
FIGURE 2 in New insights on the taxonomy and phylogenetic relationships of the Neotropical genus Phoebis (Pieridae: Coliadinae) revealed by molecular and morphological data
FIGURE 2. Phylogenetic tree obtained in Bayesian inference analysis for genus Phoebis, based on the combined data set of 20 morphological characters, one mitochondrial and tree nuclear markers. Values below the branches are posterior probabilities (BI analysis) those above the branches are bootstraps values (ML analysis).
FIGURE 3 in New insights on the taxonomy and phylogenetic relationships of the Neotropical genus Phoebis (Pieridae: Coliadinae) revealed by molecular and morphological data
FIGURE 3. Likelihood ancestral states reconstruction of some characters used for classifications of Phoebis and related genera. Character used in this analysis included dorsal spine of harpe, signum shape and line crossing wings.
Fig. 4 in A dated molecular perspective of eucalypt taxonomy, evolution and diversification
Fig. 4. Bayesian analysis using the concatenated dataset of internal transcribed spacer (ITS), external transcribed spacer (ETS), matK and psbA–trnH, labelled with the informal higher-level groups mesicalypts (3 genera) and newcalypt (1 genus), the eucalypt genus Angophora, and all eucalypt subgenera as classified by Nicolle (2015b). Numbers at nodes in the larger phylogeny represent the penalised-likelihood estimated age. Numbers after each name in the inset box represent the number of terminals in the clade and numbers at nodes represent the posterior probability in the Bayesian analysis. Ma represents millions of years as returned for each penalised-likelihood dating analysis (a summary of estimated ages is provided in Table 2).
Fig. 3. Maximum likelihood-2 in A dated molecular perspective of eucalypt taxonomy, evolution and diversification
Fig. 3. Maximum likelihood-2 (ML-2) analysis using the concatenated dataset of internal transcribed spacer (ITS), external transcribed spacer (ETS), matK and psbA–trnH, labelled with the informal higher-level groups mesicalypts (3 genera) and newcalypt (1 genus), the eucalypt genus Angophora, and all eucalypt subgenera as classified by Nicolle (2015b). Numbers at nodes in the larger phylogeny represent the penalised-likelihood estimated age. Numbers after each name in the inset box represent the number of terminals in the clade and numbers at nodes represent the bootstrap value in the ML analysis. Ma represents millions of years as returned for each penalised-likelihood dating analysis (a summary of estimated ages is provided in Table 2).
Fig. 2. Maximum likelihood-1 in A dated molecular perspective of eucalypt taxonomy, evolution and diversification
Fig. 2. Maximum likelihood-1 (ML-1) analysis using the concatenated dataset of internal transcribed spacer (ITS), external transcribed spacer (ETS), matK and psbA–trnH, labelled with the informal higher-level groups mesicalypts (3 genera) and newcalypt (1 genus), the eucalypt genus Angophora, and all eucalypt subgenera as classified by Nicolle (2015b). Numbers at nodes in the larger phylogeny represent the penalised-likelihood estimated age. The numbers after each name in the inset box represent the number of terminals in the clade and numbers at nodes represent the bootstrap value in the ML analysis. Ma represents millions of years as returned for each penalised-likelihood dating analysis (a summary of estimated ages is provided in Table 2).
Fig. 3 in Phylogeny, molecular ecology and taxonomy of southern Iberian lineages of Triops mauritanicus (Crustacea: Notostraca)
Fig. 3 Distribution of Triops mauritanicus lineages in southwestern Iberian Peninsula, limited to records from this and a preceding study (Korn et al. 2006), as literature records could not be assigned to the phylogenetic lineages. Black lines show political borders, grey lines the major rivers; dashed area indicates extension of marismas (natural temporary marshes) in Guadalquivir River delta around the year 1900
Fig. 9 Triops vicentinus n in Phylogeny, molecular ecology and taxonomy of southern Iberian lineages of Triops mauritanicus (Crustacea: Notostraca)
Fig. 9 Triops vicentinus n. sp., adult male (holotype). a Proximal region of 3rd endite of 10th trunk limb, anterior view; meshwork spines (and associat- ed row of spinules) shown in black, submarginal spines and edge of endite in grey. b Detail of 10th trunk limb, anterior view (EN3, 4 = 3rd, 4th endite; MWSP = meshwork spines; SMSP = submarginal spines). c Distal part of 2nd trunk limb. d Proximal region of 5th endite of 2nd trunk limb. e Telson, dorsal view. f Detail of 4th endite of 10th trunk limb, posterior view; only proximalmost parts of posterior row of meshwork spines shown, anterior row of meshwork spines in grey
Fig. 2 in Phylogeny, molecular ecology and taxonomy of southern Iberian lineages of Triops mauritanicus (Crustacea: Notostraca)
Fig. 2 Hypotheses on Triops mauritanicus ("T.m.") and T. c. cancriformis ("T.c.") phylogeny as reflected by our mitochondrial sequence data; outgroups (Triops longicaudatus, T. granarius, Lepidurus a. apus, L. a. lubbocki, L. arcticus, L. lemmoni) removed for clarity. a ML 12S tree based on large 12S dataset, using TVM+G model of evolution; ML/ MP bootstrap support values given for selected branches. b First of two ML trees based on combined 12S and 16S sequences from selected samples, using GTR+G model; ML
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.