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40 results for “Automatic Identification”
Figure 2 in Automatic identification of bird females using egg phenotype
Figure 2. Phenotypic distances of nine average eggs laid by nine genotyped common cuckoo females (A) and their genetic distances (B). Thicker green lines denote higher phenotypic and genetic similarity. Correlation between phenotypic and genetic distances (C).
Data from: StomataCounter: a neural network for automatic stomata identification and counting
Stomata regulate important physiological processes in plants and are often phenotyped by researchers in diverse fields of plant biology. Currently, there are no user friendly, fully-automated methods to perform the task of identifying and counting stomata, and stomata density is generally estimated by manually counting stomata. We introduce StomataCounter, an automated stomata counting system using a deep convolutional neural network to identify stomata in a variety of different microscopic images. We use a human-in-the-loop approach to train and refine a neural network on a taxonomically diverse collection of microscopic images. Our network achieves 98.1% identification accuracy on Ginkgo SEM micrographs, and 94.2% transfer accuracy when tested on untrained species. To facilitate adoption of the method, we provide the method in a publicly available website at http://www.stomata.science/.
Resulting Pseudonymized Classification Data for "Automatic Core-Developer Identification on GitHub: A Validation Study"
<p>Resulting pseudonymized classification data of the study "Automatic Core-Developer Identification on GitHub: A Validation Study". The corresponding input data, from which the output data have been derived, can be found here: https://zenodo.org/record/7775078</p>
Pseudonymized Raw Data for "Automatic Core-Developer Identification on GitHub: A Validation Study"
<p>Pseudonymized raw data (i.e., commit data and issue data for 25 GitHub projects) that has been used as input for the study published as "Automatic Core-Developer Identification on GitHub: A Validation Study".</p> <p>The pseudonymized raw data has been extracted via the tools <a href="https://github.com/se-sic/codeface/">Codeface</a>, <a href="https://github.com/se-sic/GitHubWrapper/">GitHubWrapper</a>, <a href="https://github.com/mehdigolzadeh/BoDeGHa">BoDeGHa</a>, and <a href="https://github.com/se-sic/codeface-extraction/">codeface-extraction</a> (and additional manual corrections after sanity checks).</p>
Automatic Optical Identification of the Spine Vertebrate Using Three-dimensional Optical Detection Based on a CT Test
ClinicalTrials.gov study NCT04914585. IPD Sharing: NO. Countries: 1. Publications: 3.
Automatic taxonomic identification based on the Fossil Image Dataset (>415,000 images) and deep convolutional neural networks
Open the record for dataset details and reuse information.
Data from: StomataCounter: a neural network for automatic stomata identification and counting
Open the record for dataset details and reuse information.
Fast likelihood calculations for automatic identification of macroevolutionary rate heterogeneity in continuous and discrete traits
<p>Understanding phenotypic disparity across the tree of life requires identifying where and when evolutionary rates change on phylogeny. A primary methodological challenge in macroevolution is therefore to develop methods for accurate inference of among-lineage variation in rates of phenotypic evolution. Here, we describe a method for inferring among-lineage evolutionary rate heterogeneity in both continuous and discrete traits. The method assumes that the present-day distribution of a trait is shaped by a variable-rate process arising from a mixture of constant-rate processes and uses a single-pass tree traversal algorithm to estimate branch-specific evolutionary rates. By employing dynamic programming optimization techniques and approximate maximum likelihood estimators where appropriate, our method permits rapid exploration of the tempo and mode of phenotypic evolution. Simulations indicate that the method reconstructs rates of trait evolution with high accuracy. Application of the method to datasets on squamate reptile reproduction and turtle body size recovers patterns of rate heterogeneity identified by previous studies but with computational costs reduced by many orders of magnitude. Our results expand the set of tools available for detecting macroevolutionary rate heterogeneity and point to the utility of fast, approximate methods for studying large scale biodiversity dynamics.</p>
Figure 7 in Using deep-learning for automatic identification of images of marine benthic macro-invertebrate bycatch: a proof of concept
Figure 7. – Example of detection and classification obtained with an image including Crinoïds, a Gastropod and pieces of seaweed with network 2; red squares and annotations have been provided by the computer with no human action.
scPanel: A tool for automatic identification of sparse gene panels for generalizable patient classification using scRNA-seq datasets
<p>Dataset used to reproduce severe COVID-19 prediction results in scPanel manuscript.</p>
Fast likelihood calculations for automatic identification of macroevolutionary rate heterogeneity in continuous and discrete traits
Open the record for dataset details and reuse information.
An annotated visual dataset for Automatic weed detection and identification
<p>This dataset is provided and linked to the Paper :<br> <strong>Instance segmentation for the fine detection of crop and weed plants by precision agricultural robots, </strong><em>in APPS, Special Issue: Machine Learning in Plant Biology: From Genomics to Field Studies</em></p> <p> </p> <p>The training and test images are provided there.</p> <p><br> This research received financial support from the Agence Nationale de la Recherche (grant No. ANR-17-ROSE-0003).</p>
Data and R script for publication: The LOKI underwater imaging system and an automatic identification model for the detection of zooplankton taxa in the Arctic Ocean
<p>This is a www.zenodo.org data and R script upload for publication:</p> <p> </p> <p>Schmid, M.S. et al., The LOKI underwater imaging system and an automatic identification model for the detection of zooplankton taxa in the Arctic Ocean. Methods in Oceanography (2016), http://dx.doi.org/10.1016/j.mio.2016.03.003</p> <p> </p> <p>Downloadable script: Script_Schmid_Mio_2016_data_upload.R</p> <p>Downloadable data: Schmid_2016_MIO_CGlac.csv</p>
Supplementary material to 'Automatic Identification of Hate Speech – A Case-Study of Alt-Right YouTube Videos'
<p>The associated files have been created for and is analysed in a fortcoming article entitled <em>Automatic Identification of Hate Speech – A Case-Study of Alt-Right YouTube Videos'. </em>The material is divided into six tables as follows:</p> <table> <tbody> <tr> <td>Sentence top 5%</td> <td>The 19th 20-quantile predicted most hateful sentences</td> </tr> <tr> <td>Sentence bottom 5%</td> <td>The bottom 20-quantile predicted moste hatefull sentences (the least likely to contain hatespeech)</td> </tr> <tr> <td>Paragraphs</td> <td>Prediction and annotation of paragraphs</td> </tr> <tr> <td>Video top 10%</td> <td>Titles of the top decile predicted hateful videos</td> </tr> <tr> <td>Video bottom 10%</td> <td>Titles of the bottom decile predicted hateful videos</td> </tr> <tr> <td>Video bottom 10% - Alt right</td> <td>Titles of the bottom decile predicted hateful videos without History</td> </tr> </tbody> </table> <p>The data is uploaded in two formats:</p> <p><strong>Excel file: </strong>Automatic_Detection_of_Hate_Speech_a_Case-Study_of_Alt-Right_Videos.xlsx contains all six tables in one file, with a supplementary <em>codebook. </em></p> <p><strong>Tab Separated Values (TSV):</strong> Each file correspond to a single sheet from the excel file, and are named accordingly. UTF-8 Encoded.<strong><br></strong></p>
Supplementary Website, Data, and Scripts for the Paper "Automatic Core-Developer Identification on GitHub: A Validation Study"
<p>Supplementary website containing result plots, pseudonymized input data, resulting pseudonymized classification data, analysis scripts, and Dockerfile used to produce the results of the paper "Automatic Core-Developer Identification on GitHub: A Validation Study".</p> <p>The pseudonymized input data is also availble separately here: https://zenodo.org/record/7775078</p> <p>The resulting pseudonymized classification data is also available separately here: https://zenodo.org/record/7775385</p>
Establishment and Application of an Artificial Intelligence Algorithm for Automatic Identification of Intraoperative Bleeding During Laparoscopic Pancreaticoduodenectomy
ClinicalTrials.gov study NCT06172062. IPD Sharing: NO. Countries: 1. Publications: 0.
Construction and Validation of a Tool for Automatic Identification of Care Pathways At Risk of Sub-optimality in the Management of Severe Infections in Children (DIABACT IV)
ClinicalTrials.gov study NCT02167802. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Replication Package for the Paper: "Will Data Influence the Experiment Results?: A Replication Study of Automatic Identification of Decisions"
<p>This is the replication package for the paper: "Will Data Influence the Experiment Results?: A Replication Study of Automatic Identification of Decisions". It contains the source code and dataset of our experiment for the replication by other researchers. In the meanwhile, we provide brief description of the files in the replication package below.</p> <p><strong>1. main_code folder</strong></p> <ul> <li><em>automatic_approach.py </em>contains the main source code of the automatic approach for identifying decisions in our experiment, which is conducted on MacOs and Python 3.7.9. <strong>Note that you may get slightly</strong> <strong>different experiment results when conducting the experiments on different environment configurations.</strong></li> <li><em>requirement.txt</em> records all the installation packages and their version numbers needed for the current program to run. You can use "<em>pip install -r requirement.txt</em>" to rebuild the project and install all dependencies. <strong>Note that you may get slightly different experiment results when using different packages or versions. </strong></li> </ul> <p><strong>2. dataset folder</strong></p> <ul> <li><em>EASE2020 - 650 decisions.xlsx </em>contains 650 decision sentences from our previous work (EASE2020)</li> <li><em>EASE2020 - 650 non decisions.xlsx </em>contains 650 non-decision sentences from our previous work (EASE2020)</li> <li><em>Our 844 relabeled decisions.xlsx</em> contains 844 relabeled decisions in this work.</li> <li><em>Our 750 assumptions.xlsx</em> contains 750 assumptions from our previous work (APSEC2019)</li> </ul> <p><strong>3. RQ1 folder</strong></p> <ul> <li><em>experiment_RQ1.py</em> contains the main source code of the experiment for answering RQ1, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul> <p><strong>4. RQ2 folder</strong></p> <ul> <li><em>experiment_RQ2.py</em> contains the main source code of the experiment for answering RQ2, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul> <p> </p> <p><strong>5. RQ3 folder</strong></p> <ul> <li><em>experiment_RQ3.py</em> contains the main source code of the experiment for answering RQ3, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul> <p> </p>
Replication Package for the Paper: "Will Data Influence the Experiment Results?: A Replication Study of Automatic Identification of Decisions"
<p>This is the replication package for the paper: "Will Data Influence the Experiment Results?: A Replication Study of Automatic Identification of Decisions". It contains the source code and dataset of our experiment for the replication by other researchers. In the meanwhile, we provide brief description of the files in the replication package below.</p> <p><strong>1. main_code folder</strong></p> <ul> <li><em>automatic_approach.py </em>contains the main source code of the automatic approach for identifying decisions in our experiment, which is conducted on MacOs and Python 3.7.9. <strong>Note that you may get slightly</strong> <strong>different experiment results when conducting the experiments on different environment configurations.</strong></li> <li><em>requirement.txt</em> records all the installation packages and their version numbers needed for the current program to run. You can use "<em>pip install -r requirement.txt</em>" to rebuild the project and install all dependencies. <strong>Note that you may get slightly different experiment results when using different packages or versions. </strong></li> </ul> <p><strong>2. dataset folder</strong></p> <ul> <li><em>EASE2020 - 650 decisions.xlsx </em>contains 650 decision sentences from our previous work (EASE2020)</li> <li><em>EASE2020 - 650 non decisions.xlsx </em>contains 650 non-decision sentences from our previous work (EASE2020)</li> <li><em>Our 844 relabeled decisions.xlsx</em> contains 844 relabeled decisions in this work.</li> <li><em>Our 750 assumptions.xlsx</em> contains 750 assumptions from our previous work (APSEC2019)</li> </ul> <p><strong>3. RQ1 folder</strong></p> <ul> <li><em>experiment_RQ1.py</em> contains the main source code of the experiment for answering RQ1, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul> <p><strong>4. RQ2 folder</strong></p> <ul> <li><em>experiment_RQ2.py</em> contains the main source code of the experiment for answering RQ2, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul> <p><strong>5. RQ3 folder</strong></p> <ul> <li><em>experiment_RQ3.py</em> contains the main source code of the experiment for answering RQ3, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul>
Replication Package for the Paper: "Will Data Influence the Experiment Results?: A Replication Study of Automatic Identification of Decisions"
<p>This is the replication package for the paper: "Will Data Influence the Experiment Results?: A Replication Study of Automatic Identification of Decisions". It contains the source code and dataset of our experiment for the replication by other researchers. In the meanwhile, we provide brief description of the files in the replication package below.</p> <p><strong>1. main_code folder</strong></p> <ul> <li><em>automatic_approach.py </em>contains the main source code of the automatic approach for identifying decisions in our experiment, which is conducted on MacOs and Python 3.7.9. <strong>Note that you may get slightly</strong> <strong>different experiment results when conducting the experiments on different environment configurations.</strong></li> <li><em>requirement.txt</em> records all the installation packages and their version numbers needed for the current program to run. You can use "<em>pip install -r requirement.txt</em>" to rebuild the project and install all dependencies. <strong>Note that you may get slightly different experiment results when using different packages or versions. </strong></li> </ul> <p><strong>2. dataset folder</strong></p> <ul> <li><em>EASE2020 - 650 decisions.xlsx </em>contains 650 decision sentences from our previous work (EASE2020)</li> <li><em>EASE2020 - 650 non decisions.xlsx </em>contains 650 non-decision sentences from our previous work (EASE2020)</li> <li><em>Our 844 relabeled decisions.xlsx</em> contains 844 relabeled decisions in this work.</li> <li><em>Our 750 assumptions.xlsx</em> contains 750 assumptions from our previous work (APSEC2019)</li> </ul> <p><strong>3. RQ1 folder</strong></p> <ul> <li><em>experiment_RQ1.py</em> contains the main source code of the experiment for answering RQ1, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul> <p><strong>4. RQ2 folder</strong></p> <ul> <li><em>experiment_RQ2.py</em> contains the main source code of the experiment for answering RQ2, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul> <p><strong>5. RQ3 folder</strong></p> <ul> <li><em>experiment_RQ3.py</em> contains the main source code of the experiment for answering RQ3, which is conducted on the same environment configuration as the <em>automatic_approach.py.</em></li> </ul>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.