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FIGURE 4 Deduced amino-acid sequences for the Gnrh2 in Differential expression of HPG-axis genes in autotetraploids derived from red crucian carp Carassius auratus red var., × blunt snout bream Megalobrama amblycephala,
FIGURE 4 Deduced amino-acid sequences for the Gnrh2 () and Lhr () genes in Carassius auratus red var. (RCC) and autotetraploid C. auratus red var. ♀ × Megalobrama amblycephala ♂ (4nRR)
FIGURE 2 in Differential expression of HPG-axis genes in autotetraploids derived from red crucian carp Carassius auratus red var., × blunt snout bream Megalobrama amblycephala,
FIGURE 2 (a) The mature eggs (scale bar = 100 μm) and (b) mature sperm (scale bar = 10 μm) of autotetraploid Carrasius auratus red var. ♀ x Megalobrama amblycephala ♂ (4nRR)
FIGURE 3 in Differential expression of HPG-axis genes in autotetraploids derived from red crucian carp Carassius auratus red var., × blunt snout bream Megalobrama amblycephala,
FIGURE 3 Reverse-transcription (RT)-PCR analysis of the expression of (a) gnrh2, (b) fshb, (c) lhb, (d) fshr and (e) lhr messenger (m)RNA in various tissues of autotetraploid Carrasius auratus red var. ♀ x Megalobrama amblycephala ♂ (4nRR). The upper strip of each panel (a)–(e) shows the positive control of actin gene while the lower strip of each panel shows the RT-PCR amplification of the target gene
FIGURE 1 in Differential expression of HPG-axis genes in autotetraploids derived from red crucian carp Carassius auratus red var., × blunt snout bream Megalobrama amblycephala,
FIGURE 1 The gonadal structure of Carassius auratus red var. [RCC; (a)–(c)] and autotetraploids C. auratus red var. ♀ × Megalobrama amblycephala ♂ [4nRR; (d)–(f)]: (a) ovary of 7 month-old RCC containing many phase II and a few phase III oocytes; (b) ovary of 12 month-old RCC showing many mature phase IV ova; (c) testis of 12 month-old RCC with numerous mature sperms () and a small amount of spermatocytes () in the lobules of testes; (d) ovary of 7 month-old 4nRR containing phase II and a few phase III oocytes; (e) ovary of 12 month-old 4nRR with numerous mature phase IV ova; (f) testis of 12 month-old 4nRR with numerous mature sperms () and a small amount of spermatocytes () in the lobules of testes, the scale bars: (a), (b), (d), and (e) = 100 μm; (c) and (f) = 10 μm
Obesity reshapes the microbial population structure along the gut-liver-lung axis in mice
<p>Data repository for the paper: Galaris A., Fanidis D. et al. <em>Obesity reshapes the microbial population structure along the gut-liver-lung axis in mice</em>.<em> </em>2021</p> <p>For further data requests and questions please contact the corresponding author of the respective publication.</p> <p>All fastq files have been processed to remove human and mouse sequences.</p>
"An experimental investigation of a roof-mounted horizontal-axis wind turbine in an idealized urban environment"
<p>Dar, Arslan Salim, Guillem Armengol Barcos, and Fernando Porté-Agel. "An experimental investigation of a roof-mounted horizontal-axis wind turbine in an idealized urban environment." <em>Renewable Energy</em> (2022).</p>
Text-fig. 4. a: Conglomeratic to massive sandstone facies 1, facies A are composed of Andesit (AF), Clay (CF) and Sandstone (SF) fragments lain on medium-sandstone. b: Conglomeratic to massive sandstone facies, outcropping of massive sandstone facies comprises of fine to medium grain size of grey to yellowish sandstone. c: Heterolithic sandstone-mudstone facies, intercalation of fine sand with silt and shale as type form of heterolithic sandstone mudstone as indicated by a high sand/shale ratio. d: Example outcrops of heterolithic sandstone-mudstone 2 indicated by low sand/shale ratio. e: Heterolithic fine sand and mudstone and mudstone facies, intercalation of thin sandstone and shale. f: Representative of slump deposits outcrops belong to conglomeratic to massive sandstone facies, which is indicated by the intercalation of sandstone and shale and some disturbed beds or layers as seen in slump deposits. The facies type is normally deposited within the basin floor, channel margin or as a product of the overbank deposits. In this figure the slump deposit is shown as internal bedding, some occurred on the bedding-plane. Trend slope measurement of the fold-axis revealed values N 135°E and N 108°E. in Lithofacies And Ichnofacies Of Turbidite Deposits, West Java, Indonesia
Text-fig. 4. a: Conglomeratic to massive sandstone facies 1, facies A are composed of Andesit (AF), Clay (CF) and Sandstone (SF) fragments lain on medium-sandstone. b: Conglomeratic to massive sandstone facies, outcropping of massive sandstone facies comprises of fine to medium grain size of grey to yellowish sandstone. c: Heterolithic sandstone-mudstone facies, intercalation of fine sand with silt and shale as type form of heterolithic sandstone mudstone as indicated by a high sand/shale ratio. d: Example outcrops of heterolithic sandstone-mudstone 2 indicated by low sand/shale ratio. e: Heterolithic fine sand and mudstone and mudstone facies, intercalation of thin sandstone and shale. f: Representative of slump deposits outcrops belong to conglomeratic to massive sandstone facies, which is indicated by the intercalation of sandstone and shale and some disturbed beds or layers as seen in slump deposits. The facies type is normally deposited within the basin floor, channel margin or as a product of the overbank deposits. In this figure the slump deposit is shown as internal bedding, some occurred on the bedding-plane. Trend slope measurement of the fold-axis revealed values N 135°E and N 108°E.
Text-fig. 8. Lanfrancia subglobosa E.REID et M.CHANDLER. a–c, e–g: Holotype V. 23014. a: reflected light. b, c: Surface renderings from micro-CT data. a, b: Lateral views with dorsal surface of locule facing forward and locule casts protruding in upper part. c: Apical view. d: Fruit showing two locule casts the dorsal surfaces of which face to the left and the right, V. 30417(1). e–g: Successive digital transverse sections showing four u to v to c-shaped locules from micro-CT data. h: Physical transverse section of specimen in (d). i–k: Physical transverse section, V. 30419 from Herne Bay, blue lines in K indicating limits of fibre layer lining the locule. l: Detail from (h), showing sclerenchyma composing the septa and central axis. m: Transverse section, enlargement from (i), showing anatomy of tissues adjacent to the dorsal infold. Blue lines indicate limits of the fibre layer lining the locule. n: Part of (m) recut, tangential section transecting the dorsal infold (central), both limbs of the locule cast, and peripheral parts of the pericarp on either side. o: Detail from (n), showing anatomy of the infold. Scale bars 5 mm in (a–h) (a–g share the same bar), 3 mm in (i), 1 mm in (j–m), 0.5 mm in (n), 0.2 mm in (o). in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 8. Lanfrancia subglobosa E.REID et M.CHANDLER. a–c, e–g: Holotype V. 23014. a: reflected light. b, c: Surface renderings from micro-CT data. a, b: Lateral views with dorsal surface of locule facing forward and locule casts protruding in upper part. c: Apical view. d: Fruit showing two locule casts the dorsal surfaces of which face to the left and the right, V. 30417(1). e–g: Successive digital transverse sections showing four u to v to c-shaped locules from micro-CT data. h: Physical transverse section of specimen in (d). i–k: Physical transverse section, V. 30419 from Herne Bay, blue lines in K indicating limits of fibre layer lining the locule. l: Detail from (h), showing sclerenchyma composing the septa and central axis. m: Transverse section, enlargement from (i), showing anatomy of tissues adjacent to the dorsal infold. Blue lines indicate limits of the fibre layer lining the locule. n: Part of (m) recut, tangential section transecting the dorsal infold (central), both limbs of the locule cast, and peripheral parts of the pericarp on either side. o: Detail from (n), showing anatomy of the infold. Scale bars 5 mm in (a–h) (a–g share the same bar), 3 mm in (i), 1 mm in (j–m), 0.5 mm in (n), 0.2 mm in (o).
Text-fig. 2. a, b: Pinus aff. peuce cones. a: Oriolo, MSF 643. b: Tebano, MSF 1021. c: Abies aff. alba cone scale, Oriolo MSF 988. d, e: Tsuga chiarugii cones. d: Oriolo MSF 638. e: Oriolo MSF 979. f, h: Bambusa lugdunensis leaves and leafy axis. f: Oriolo MSF 937. h: Oriolo MSF 651. g: Modern leaf of Yushania for comparison (NMNS Cleared Leaf Database specimen U1347). i: Phragmites sp. Oriolo MSF n.n. Scale bars 50 mm (a, b, h, i), 10 mm (c–g). in The Late Early Pleistocene Flora Of Oriolo, Faenza (Italy): Assembly Of The Modern Forest Biome
Text-fig. 2. a, b: Pinus aff. peuce cones. a: Oriolo, MSF 643. b: Tebano, MSF 1021. c: Abies aff. alba cone scale, Oriolo MSF 988. d, e: Tsuga chiarugii cones. d: Oriolo MSF 638. e: Oriolo MSF 979. f, h: Bambusa lugdunensis leaves and leafy axis. f: Oriolo MSF 937. h: Oriolo MSF 651. g: Modern leaf of Yushania for comparison (NMNS Cleared Leaf Database specimen U1347). i: Phragmites sp. Oriolo MSF n.n. Scale bars 50 mm (a, b, h, i), 10 mm (c–g).
Figure 3: Number of branches for each generation, in the asymmetric (TOP) and symmetric (BOTTOM) generation. Notice that the Y-axis is logarithmic.-THE RESPIRATORY IMPEDANCE IN AN ASYMMETRIC MODEL OF THE LUNG STRUCTURE
<p>Figure 3 shows the number of branches that are in one generation, for the symmetric and asymmetric<br> lung structure. Notice the diferent slope which characterizes the space-filling distribution.</p>
Figure 3: Number of branches for each generation, in the asymmetric (TOP) and symmetric (BOTTOM) generation. Notice that the Y-axis is logarithmic.
<p>Figure 3 shows the num-<br> ber of branches that are in one generation, for the symmetric and asymmetric<br> lung structure. Notice the di®erent slope which characterizes the space-¯lling<br> distribution.</p>
SI Figure 4: SEM images of either unwashed (left) or washed (right) E. antarcticus nematodes. A. Unwashed head region with arrows pointing to attached material and possible fungal hyphae. B. Washed head region with arrows pointing to the remaining attached material. C. Unwashed annules with arrows pointing to commonly attached foreign material. D. Washed annules with arrows pointing to remaining attached material. E. Unwashed somatic pore with arrows pointing to the common organic material. F. Washed vulva with an arrow pointing to remaining attached organic material. G. Unwashed cuticle with arrows showing a possible biofilm. H. Washed cuticle showing single attached cells indicated with arrows. I. Unwashed cuticle showing an off-axis line of attached material. J. Washed cuticle showing a similar off-axis line of material (as indicated with arrow) but reduced in quantity compared to the unwashed. in External and internal microbiomes of Antarctic nematodes are distinct, but more similar to each other than the surrounding environment
SI Figure 4: SEM images of either unwashed (left) or washed (right) E. antarcticus nematodes. A. Unwashed head region with arrows pointing to attached material and possible fungal hyphae. B. Washed head region with arrows pointing to the remaining attached material. C. Unwashed annules with arrows pointing to commonly attached foreign material. D. Washed annules with arrows pointing to remaining attached material. E. Unwashed somatic pore with arrows pointing to the common organic material. F. Washed vulva with an arrow pointing to remaining attached organic material. G. Unwashed cuticle with arrows showing a possible biofilm. H. Washed cuticle showing single attached cells indicated with arrows. I. Unwashed cuticle showing an off-axis line of attached material. J. Washed cuticle showing a similar off-axis line of material (as indicated with arrow) but reduced in quantity compared to the unwashed.
Drag, lift, and torque correlations for axi-symmetric rod-like non-spherical particles in linear wall-bounded shear flow
<p><strong>Data linked to the manuscript: </strong><br><em>Drag, lift, and torque coefficients of fixed axi-symmetric rod-like particles in linear wall-bounded shear flow</em></p> <p><strong>Authors:</strong><br>Victor Cheron, Berend van Wachem</p> <p>Corresponding author:<br>Berend.van.Wachem@gmail.com</p> <p><strong>Files</strong><br>Temporally averaged drag, lift and torque coefficients are written in .txt files stored in the folder ResultsCoefficients.<br>Python scripts used to plot the correlations are stored in the folder PythonScript.<br>Two simulation results are provided in the folder SimulationResults.</p> <p><strong>Results and Coefficients</strong></p> <p>The .txt files are split per coefficient, aspect ratio and shear rate, which can be identified by the name of the .txt file.<br>The results obtained for the torque coefficient of the particle of aspect ratio 2.5 for a uniform flow configuration are given in the file:<br><em>Uniform-Torque-Angles-Size2-5.txt</em></p> <p>The results obtained for the lift coefficient of the particle of aspect <br>ratio 10 for a shear rate 0.2 configuration are given in the file:<br><em>Shear02-Lift-Angles-Size10.txt</em></p> <p>In the files, the results are ordered per orientation angle and particle Reynolds number. </p> <p><strong>PythonScripts</strong></p> <p>The python scripts are split among three files:<br>- Getter.py: this script reads the .txt files storing the coefficients.<br>- ManuscriptCorrelations.py : this script returns the functions to read plot the correlations for the drag, lift and torque coefficients.<br>- generalmain.py : calls the functions</p> <p>The scripts Getter.py and ManuscriptCorrelations.py are called from the script generalmain.py file. <br>This will return a 1D column vector ordering the variables used to derive the<br>correlations:<br>- Coefficients<br>- Reynolds number<br>- Orientation Angle<br>- Dimensionless distance to the wall<br>- Aspect ratio</p> <p><strong>Simulation Results</strong></p> <p>A simulation result is provided:<br>- Aspect ratio 5, particle Reynolds number 100, orientation angles 30 and 150,<br> dimensionless distance 1.</p> <p>The data of all fields (pressure, velocity, source terms from the particles) are stored in .h-files.</p> <p>A .xmf reader is provided to read the simulation results in Paraview.</p> <p>Data for one converged simulation time are provided due to storage limits.</p> <p> </p> <p><strong>Acknowledgments</strong><br>This research was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - Project-ID 448292913 and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - Project-ID 422037413 - TRR 287.</p>
Python scripts and datasets used in the article "Investigating the off-axis GRB afterglow scenario for extragalactic fast X-ray transients"
<p>This package includes datasets and python scripts used in the analysis and creation of figures in the A&A paper "Investigating the off-axis GRB afterglow scenario for extragalactic fast X-ray transients" (Wichern et al. 2024).</p>
Рис. 1. Δинамика чисΛенности меΛких мΛекопитающих в Цасучейском бору: 1 — суммарная чисΛенность (особей / 100 циΛинΑро-суток); Αоминирующие виΑы: 2 — забайкаΛьский хомячок, 3 — бурозубка тунΑряная, 4 — бурозубка крошечная, 5 — поΛёвка монгоΛьская, 6 — поΛёвка РаΑΑе, 7 — красная поΛёвка; A — остепнённый сосняк, B — первичная гарь, С — старая гарь, D — повторная гарь; стреΛка указывает время прохожΑения пожара. Ось X — гг., ось Y — чисΛенность Fig. 1. Population dynamics of small mammals in the Tsasucheysky Pine Forest: 1 — total abundance (individuals / 100 cylinder-days); dominant species: 2 — Cricetulus pseudogriseus, 3 — Sorex tundrensis, 4 — S. minutissimus, 5 — Alexandromys mongolicus, 6 — Lasiopodomys raddei, 7 — Myodes rutilus; A — steppe pine forest, B — primary burns site, С — old burns site; D — repeated burns site; the arrow indicates the time of the fire. The X-axis shows years; the Y-axis shows population density in Population dynamics of small mammals after spring fires in steppe pine forest
Рис. 1. Δинамика чисΛенности меΛких мΛекопитающих в Цасучейском бору: 1 — суммарная чисΛенность (особей / 100 циΛинΑро-суток); Αоминирующие виΑы: 2 — забайкаΛьский хомячок, 3 — бурозубка тунΑряная, 4 — бурозубка крошечная, 5 — поΛёвка монгоΛьская, 6 — поΛёвка РаΑΑе, 7 — красная поΛёвка; A — остепнённый сосняк, B — первичная гарь, С — старая гарь, D — повторная гарь; стреΛка указывает время прохожΑения пожара. Ось X — гг., ось Y — чисΛенность Fig. 1. Population dynamics of small mammals in the Tsasucheysky Pine Forest: 1 — total abundance (individuals / 100 cylinder-days); dominant species: 2 — Cricetulus pseudogriseus, 3 — Sorex tundrensis, 4 — S. minutissimus, 5 — Alexandromys mongolicus, 6 — Lasiopodomys raddei, 7 — Myodes rutilus; A — steppe pine forest, B — primary burns site, С — old burns site; D — repeated burns site; the arrow indicates the time of the fire. The X-axis shows years; the Y-axis shows population density
Data for "Nonlinear Trapping Stiffness of Mid-Air Single-Axis Acoustic Levitators"
<p>Data associated with the manuscript entitled "Nonlinear Trapping Stiffness of Mid-Air Single-Axis Acoustic Levitators".</p>
Data set for "Columnar clusters in the human motion complex reflect consciously perceived motion axis"
<p>Accompanying data for manuscript “Columnar clusters in the human motion complex reflect consciously perceived motion axis” written by Marian Schneider, Valentin Kemper, Thomas Emmerling, Federico De Martino, Rainer Goebel, submitted, November 2018.</p> <p>Imaging files<br> -------------<br> * T1w and PDw images, only acquired in session 1<br> * 2 runs task-MotLoc, only acquired in session 2<br> * 5-6 runs task-ambiguous (called "Experiment 1" in accompanying manuscript, divided across 2 scanning sessions)<br> * 5-6 runs task-unambiguous (called "Experiment 2" in accompanying manuscript, divided across 2 scanning sessions)</p> <p><br> Acquisition details<br> -------------------<br> For visualization of the functional results, we acquired scans with structural information in the first scanning session. At high magnetic fields, MR images exhibit high signal intensity variations that result from heterogeneous RF coil profiles. We therefore acquired both T1w images and PDw images using a magnetization-prepared 3D rapid gradient-echo (3D MPRAGE) sequence (TR: 3100 ms (T1w) or 1440 ms (PDw), voxel size = 0.6 mm isotropic, FOV = 230 x 230 mm2, matrix = 384 x 384, slices = 256, TE = 2.52 ms, FA = 5°). Acquisition time was reduced by using 3× GRAPPA parallel imaging and 6/8 Partial Fourier in phase encoding direction (acquisition time (TA): 8 min 49 s (T1w) and 4 min 6 s (PDw)).</p> <p>To determine our region of interest, we acquired two hMT+ localiser runs. We used a 2D gradient echo (GE) echo planar imaging (EPI) sequence (1.6 mm isotropic nominal resolution; TE/TR = 18/2000 ms; in-plane field of view (FoV) 150×150 mm; matrix size 94 x 94; 28 slices; nominal flip angle (FA) = 69°; echo spacing = 0.71 ms; GRAPPA factor = 2, partial Fourier = 7/8; phase encoding direction head - foot; 240 volumes). We ensured that the area of acquisition had bilateral coverage of the posterior inferior temporal sulci, where we expected the hMT+ areas. Before acquisition of the first functional run, we collected 10 volumes for distortion correction - 5 volumes with the settings specified here and 5 more volumes with identical settings but opposite phase encoding (foot - head), here called "phase1" and "phase2".</p> <p>For the sub-millimetre measurements (Experiments 1: here called "task-ambiguous" and Experiments 2: here called "task-unambiguous"), we used a 2D GE EPI sequence (TE/TR = 25.6/2000 ms; in-plane FoV 148×148 mm; matrix size 186 x 186; slices = 28; nominal FA = 69°; echo spacing = 1.05 ms; GRAPPA factor = 3, partial Fourier = 6/8; phase encoding direction head - foot; 300 volumes), yielding a nominal resolution of 0.8 mm isotropic. Placement of the small functional slab was guided by online analysis of the hMT+ localizer data recorded immediately at the beginning of the first session. This allowed us to ensure bilateral coverage of area hMT+ for every subject. In the second scanning session, the slab was placed using Siemens auto-align functionality and manual corrections. Before acquisition of the first functional run, we collected 10 volumes for distortion correction (5 volumes with opposite phase encoding: foot - head). During acquisition, runs for the ambiguous and unambiguous motion experiments were interleaved.</p>
PROGRAMS project. Axis test on FIDIA DL155 on 2019-02-28
<p>Current and position data were recorded during linear axis movements to create a reference for future comparison.</p>
PROGRAMS project. Axis test on FIDIA Cortini L300 on 2019-05-21
<p>Current and position data were recorded during linear axis movements to create a reference for future comparison.</p>
Figure. CCA ordination of bird species. The eigenvalue of the first axis is 0.164 and of the second axis is 0.127. Species abbreviations are the first 3 letters of their genus followed by the first 3 letters of the species epithet. in Birds and small urban parks: a study in a high plateau city
Figure. CCA ordination of bird species. The eigenvalue of the first axis is 0.164 and of the second axis is 0.127. Species abbreviations are the first 3 letters of their genus followed by the first 3 letters of the species epithet.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
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