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35
datasets available to search
ShareScore release 0.7.1
Dataset results
35 results for “Breakpoint”
Precise Delination of 5q-Breakpoints and Detection of Hidden Aberrations in patients with MDS using Array CGH
GEO Series GSE8804. Homo sapiens. 13 samples. Type: Genome variation profiling by genome tiling array.
Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types (exon expression)
GEO Series GSE39287. Homo sapiens. 16 samples. Type: Expression profiling by array.
Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types
GEO Series GSE45137. Homo sapiens. 23 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing.
SVA retrotransposon insertion-associated deletion represents a novel mutational mechanism underlying large genomic copy number changes with non-recurrent breakpoints
GEO Series GSE57859. Homo sapiens. 12 samples. Type: Genome variation profiling by array.
An interaction with Ewing's sarcoma breakpoint protein EWS defines the subset of ETS factors rearranged in prostate cancer
GEO Series GSE73616. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A Mesp1-dependent developmental breakpoint in transcriptional and epigenomic specification of early cardiac precursors
GEO Series GSE210639. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Array-CGH and Next-generation sequencing of duplication CNVs reveals that most are tandem and some disrupt genes at breakpoints
GEO Series GSE62657. Homo sapiens. 161 samples. Type: Genome variation profiling by array.
A collection of read depth profiles at structural variant breakpoints
<p><strong>SWaveform is a newly created open genome-wide resource for read depth signal in the vicinity of structural variant (SV) breakpoints aims to boost development of computational tools and new algorithms for discovery of genomic rearrangement events from long- or short read sequencing data. SVs encompassing insertions, deletions, duplications, inversions and translocations are a dominant force shaping genomes and substantially contributing to genetic diversity. Still, there are challenges in reliable and efficient genotyping of SVs from whole genome sequencing data, thus delaying translation into clinical applications, and wasting valuable resources. SWaveform includes a database containing ~15M of read depth profiles at SV breakpoints extracted from 911 sequencing samples generated by the Human Genome Diversity Project, generalised patterns of the signal at breakpoints and an interface to navigate and download the data. The data set can be of immense value to bioinformatics and engineering communities as it empowers smooth application of intelligent signal processing and machine learning techniques for discovery of genomic rearrangement events and thus opens the floodgates for development of innovative algorithms and software.</strong></p>
Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types (RNA-seq)
GEO Series GSE45133. Homo sapiens. 7 samples. Type: Expression profiling by high throughput sequencing.
Recurrent breakpoint genes in colorectal cancer
GEO Series GSE63216. Homo sapiens. 352 samples. Type: Genome variation profiling by genome tiling array.
Sequencing Apoptotic DNA Breakpoints
GEO Series GSE32997. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
An interaction with Ewing's sarcoma breakpoint protein EWS defines the specific oncogenic mechanism of ETS factors rearranged in prostate cancer
GEO Series GSE81493. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Mapping translocation breakpoints by next-generation sequencing
GEO Series GSE10115. Homo sapiens. 3 samples. Type: Genome variation profiling by genome tiling array.
A Cryptic Basic Groove formed by Ubiquitin and Histone H3 Mediates the Selective Recognition of H2AK119Ub Nucleosomes by Synovial Sarcoma X Breakpoint 1 Protein
GEO Series GSE236811. Homo sapiens. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mapping translocation breakpoints using a wheat microarray
GEO Series GSE31754. Triticum aestivum. 10 samples. Type: Expression profiling by array; Genome variation profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.