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2,608 results for “Breeding”
O_SCHIERMONNIKOOG - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding on Schiermonnikoog (the Netherlands)
<p><em>O_SCHIERMONNIKOOG - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding on Schiermonnikoog (the Netherlands)</em> is a bird tracking dataset published by <a href="http://www.sovon.nl">Sovon</a>, the <a href="https://ibed.uva.nl">University of Amsterdam</a> and the <a href="https://www.inbo.be/en">Research Institute for Nature and Forest (INBO)</a>. It contains animal tracking data collected during <a href="https://chirpscholekster.nl">CHIRP</a> (Cumulative Human Impact on biRd Populations) for the study <strong>O_SCHIERMONNIKOOG</strong> using trackers developed by the University of Amsterdam Bird Tracking System (UvA-BiTS, <a href="http://www.uva-bits.nl">http://www.uva-bits.nl</a>). The study was operational from 2008 to 2014. In total 43 individuals of Eurasian oystercatchers (<em>Haematopus ostralegus</em>) have been tagged as a breeding bird on the saltmarshes of the island Schiermonnikoog (the Netherlands), mainly to study their space use both during the breeding season and winter season. Data are uploaded from the UvA-BiTS database to Movebank and from there archived on Zenodo (see <a href="https://github.com/inbo/bird-tracking">https://github.com/inbo/bird-tracking</a>). No new data are expected.</p> <p>See van der Kolk et al. (2022, <a href="https://doi.org/10.3897/zookeys.1123.90623">https://doi.org/10.3897/zookeys.1123.90623</a>) for a more detailed description of this dataset.</p> <h2>Files</h2> <p>Data in this package are exported from Movebank study <a href="https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study1605799506">1605799506</a>. Fields in the data follow the <a href="http://vocab.nerc.ac.uk/collection/MVB">Movebank Attribute Dictionary</a> and are described in <code>datapackage.json</code>. Files are structured as a <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Package</a>. You can access all data in R via <code>https://zenodo.org/records/10053970/files/datapackage.json</code> using <a href="https://frictionlessdata.github.io/frictionless-r/">frictionless</a>.</p> <ul> <li><strong>datapackage.json</strong>: technical description of the data files.</li> <li><strong>O_SCHIERMONNIKOOG-reference-data.csv</strong>: reference data about the animals, tags and deployments.</li> <li><strong>O_SCHIERMONNIKOOG-gps-yyyy.csv.gz</strong>: GPS data recorded by the tags, grouped by year.</li> <li><strong>O_SCHIERMONNIKOOG-acceleration-yyyy.csv.gz</strong>: acceleration data recorded by the tags, grouped by year.</li> </ul> <h2>Acknowledgements</h2> <p>These data were collected by Sovon in collaboration with the University of Amsterdam (UvA). Funding was provided by NAM and supported by the UvA-BiTS virtual lab on the Dutch national e-infrastructure, built with support of LifeWatch, the Netherlands eScience Center, SURFsara and SURFfoundation. The dataset was published with funding from Stichting NLBIF - Netherlands Biodiversity Information Facility.</p>
HG_OOSTENDE - Herring gulls (Larus argentatus, Laridae) breeding at the southern North Sea coast (Belgium)
<p><em>HG_OOSTENDE - Herring gulls (Larus argentatus, Laridae) breeding at the southern North Sea coast (Belgium)</em> is a bird tracking dataset published by the <a href="https://www.inbo.be/en">Research Institute for Nature and Forest (INBO)</a>. It contains animal tracking data collected by the LifeWatch GPS tracking network for large birds (<a href="http://lifewatch.be/en/gps-tracking-network-large-birds">http://lifewatch.be/en/gps-tracking-network-large-birds</a>) for the project/study <strong>HG_OOSTENDE</strong>, using trackers developed by the University of Amsterdam Bird Tracking System (UvA-BiTS, <a href="http://www.uva-bits.nl">http://www.uva-bits.nl</a>). The study was operational from 2013 until 2022. In total 60 individuals of European herring gull (<em>Larus argentatus</em>) have been tagged in or near their breeding area at the southern North Sea coast (Ostend and Zeebrugge in Belgium), mainly to study their habitat use. Data are periodically uploaded from the UvA-BiTS database to Movebank and from there archived on Zenodo (see <a href="https://github.com/inbo/bird-tracking">https://github.com/inbo/bird-tracking</a>). No new data are expected.</p> <h2>Files</h2> <p>Data in this package are exported from Movebank study <a href="https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study986040562">986040562</a>. Fields in the data follow the <a href="http://vocab.nerc.ac.uk/collection/MVB">Movebank Attribute Dictionary</a> and are described in <code>datapackage.json</code>. Files are structured as a <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Package</a>. You can access all data in R via <code>https://zenodo.org/records/10054230/files/datapackage.json</code> using <a href="https://frictionlessdata.github.io/frictionless-r/">frictionless</a>.</p> <ul> <li><strong>datapackage.json</strong>: technical description of the data files.</li> <li><strong>HG_OOSTENDE-reference-data.csv</strong>: reference data about the animals, tags and deployments.</li> <li><strong>HG_OOSTENDE-gps-yyyy.csv.gz</strong>: GPS data recorded by the tags, grouped by year.</li> <li><strong>HG_OOSTENDE-acceleration-yyyy.csv.gz</strong>: acceleration data recorded by the tags, grouped by year.</li> </ul> <h2>Acknowledgements</h2> <p>This dataset was collected using infrastructure provided by VLIZ and INBO funded by Research Foundation - Flanders (FWO) as part of the Belgian contribution to LifeWatch.</p>
MH_ANTWERPEN - Western marsh harriers (Circus aeruginosus, Accipitridae) breeding near Antwerp (Belgium)
<p><em>MH_ANTWERPEN - Western marsh harriers (Circus aeruginosus, Accipitridae) breeding near Antwerp (Belgium)</em> is a bird tracking dataset published by the <a href="https://www.inbo.be/en">Research Institute for Nature and Forest (INBO)</a>. It contains animal tracking data collected by the LifeWatch GPS tracking network for large birds (<a href="http://lifewatch.be/en/gps-tracking-network-large-birds">http://lifewatch.be/en/gps-tracking-network-large-birds</a>) for the project/study <strong>MH_ANTWERPEN</strong>, using trackers developed by the University of Amsterdam Bird Tracking System (UvA-BiTS, <a href="http://www.uva-bits.nl">http://www.uva-bits.nl</a>). The study was operational from 2018 until 2022. In total 3 individuals of western marsh harriers (<em>Circus aeruginosus</em>) and 1 common buzzard (<em>Buteo buteo</em>) have been tagged in their breeding area near the city of Antwerp (Belgium), mainly to study their habitat use and migration behaviour. Data are periodically uploaded from the UvA-BiTS database to Movebank and from there archived on Zenodo (see <a href="https://github.com/inbo/bird-tracking">https://github.com/inbo/bird-tracking</a>). No new data are expected.</p> <p>See Milotic et al. (2020, <a href="https://doi.org/10.3897/zookeys.947.52570">https://doi.org/10.3897/zookeys.947.52570</a>) for a more detailed description of this dataset.</p> <h2>Files</h2> <p>Data in this package are exported from Movebank study <a href="https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study938783961">938783961</a>. Fields in the data follow the <a href="http://vocab.nerc.ac.uk/collection/MVB">Movebank Attribute Dictionary</a> and are described in <code>datapackage.json</code>. Files are structured as a <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Package</a>. You can access all data in R via <code>https://zenodo.org/records/10054153/files/datapackage.json</code> using <a href="https://frictionlessdata.github.io/frictionless-r/">frictionless</a>.</p> <ul> <li><strong>datapackage.json</strong>: technical description of the data files.</li> <li><strong>MH_ANTWERPEN-reference-data.csv</strong>: reference data about the animals, tags and deployments.</li> <li><strong>MH_ANTWERPEN-gps-yyyy.csv.gz</strong>: GPS data recorded by the tags, grouped by year.</li> <li><strong>MH_ANTWERPEN-acceleration-yyyy.csv.gz</strong>: acceleration data recorded by the tags, grouped by year.</li> </ul> <h2>Acknowledgements</h2> <p>This dataset was collected using infrastructure provided by INBO and funded by Research Foundation - Flanders (FWO) as part of the Belgian contribution to LifeWatch.</p>
O_VLIELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding and wintering on Vlieland (the Netherlands)
<p><em>O_VLIELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding and wintering on Vlieland (the Netherlands)</em> is a bird tracking dataset published by the <a href="https://nioo.knaw.nl">Netherlands Institute of Ecology (NIOO-KNAW)</a>, <a href="http://www.sovon.nl">Sovon</a>, <a href="http://www.ru.nl">Radboud University</a>, the <a href="https://ibed.uva.nl">University of Amsterdam</a> and the <a href="https://www.inbo.be/en">Research Institute for Nature and Forest (INBO)</a>. It contains animal tracking data collected during <a href="https://chirpscholekster.nl">CHIRP</a> (Cumulative Human Impact on biRd Populations) for the study <strong>O_VLIELAND</strong> using trackers developed by the University of Amsterdam Bird Tracking System (UvA-BiTS, <a href="http://www.uva-bits.nl">http://www.uva-bits.nl</a>). The study was operational from 2016 to 2021. In total 103 individuals of Eurasian oystercatchers (<em>Haematopus ostralegus</em>) have been tagged either as a breeding bird or while overwintering on the Wadden island Vlieland (the Netherlands), mainly to study how they respond to disturbances from aircraft. Data are uploaded from the UvA-BiTS database to Movebank and from there archived on Zenodo (see <a href="https://github.com/inbo/bird-tracking">https://github.com/inbo/bird-tracking</a>). No new data are expected.</p> <p>See van der Kolk et al. (2022, <a href="https://doi.org/10.3897/zookeys.1123.90623">https://doi.org/10.3897/zookeys.1123.90623</a>) for a more detailed description of this dataset.</p> <h2>Files</h2> <p>Data in this package are exported from Movebank study <a href="https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study1605802367">1605802367</a>. Fields in the data follow the <a href="http://vocab.nerc.ac.uk/collection/MVB">Movebank Attribute Dictionary</a> and are described in <code>datapackage.json</code>. Files are structured as a <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Package</a>. You can access all data in R via <code>https://zenodo.org/records/10053988/files/datapackage.json</code> using <a href="https://frictionlessdata.github.io/frictionless-r/">frictionless</a>.</p> <ul> <li><strong>datapackage.json</strong>: technical description of the data files.</li> <li><strong>O_VLIELAND-reference-data.csv</strong>: reference data about the animals, tags and deployments.</li> <li><strong>O_VLIELAND-gps-yyyy.csv.gz</strong>: GPS data recorded by the tags, grouped by year.</li> <li><strong>O_VLIELAND-acceleration-yyyy.csv.gz</strong>: acceleration data recorded by the tags, grouped by year.</li> <li><strong>O_VLIELAND-accessory-measurements-yyyy.csv.gz</strong>: behaviour categories derived from acceleration data, grouped by year.</li> </ul> <h2>Acknowledgements</h2> <p>These data were collected by the Netherlands Institute of Ecology (NIOO-KNAW), in collaboration with Sovon, Radboud University and the University of Amsterdam (UvA) for the CHIRP (Cumulative Human Impact on biRd Populations) project. Funding was provided by the Applied and Engineering Sciences domain of the Netherlands Organisation for Scientific Research (NWO-TTW 14638) and co-funding via NWO-TTW by Royal Netherlands Air Force, Birdlife Netherlands, NAM gas exploration and Deltares. The dataset was published with funding from Stichting NLBIF - Netherlands Biodiversity Information Facility.</p>
Dataset-Response strategies to acute and chronic environmental stress in the arctic breeding Lapland longspur (Calcarius lapponicus)
<p>This is the dataset presenting the phenotypic measurements in the paper Response strategies to acute and chronic environmental stress in the arctic breeding Lapland longspur (<em>Calcarius lapponicus</em>).</p>
The Breeding Bird Survey of the United Kingdom
<p>The dataset contains the data collected during the Breeding Bird Survey (BBS) of the United Kingdom, for each visit made in years from 1994 to 2023. The data may be used for many different applications, including population trend production and pure and applied ecological studies. Please refer to the associated article (Massimino et al., in press) for recommendation for use and caveats.</p> <p>The present version, named "2024 (1994-2023 data)" includes the specific data related to the associated article. We envisage updating the datasets annually, therefore new versions will be uploaded in the future.</p>
The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding
<div>PN40024, a highly homozygous inbred line originating from ‘Helfensteiner’, was used for T2T genome assembly. In total, 21 Gb (21 024 461 524 bp, ∼42× coverage) HiFi reads were generated by the PacBio platform. For the preliminary assembly, hifiasm was used to assemble the HiFi reads. We then used MUMmer and the 12X.v0 genome version (V. vinifera genome assembly 12X.v0 to order the 38 contigs into 19 chromosomes.</div> <p> The PN_T2T genome size was finally generated (494.87 Mb), being 69 Mb longer than 12X.v0 using the same statistical method. The k-mer metric was used to evaluate genomic homozygosity, estimated at 99.8%. The BUSCO for this genome is up to 98.5%.</p> <p>The PN40024.T2T genome assembly: PN.fa</p> <p>The PN40024.T2T gene annotation: PN_T2T.v5.1.gff3</p> <p>The PN40024.T2T TE annotation: PN_T2T_TE.gff</p> <p>The PN40024.T2T centromere annotation: PN.trf.gff3</p> <p>The PN40024.T2T protein sequence: PN_protein.fa</p> <p>The PN40024.T2T cds sequence: PN40024.cds.fa</p> <p>Comparison of gene annotation among PN_T2T and PN_T2T.v5.1, 12X.v0, 12X.v2, PN40024.v4, PN40024.v4.1: correlation.list.txt</p> <p>Mitochondrial assembly sequence of PN40024: PN_T2T_mit.fa</p> <p>Annotation of mitochondrial assembly for PN40024:PN_T2T_mit.gff3</p> <p>Chloroplast assembly sequence of PN40024: PN_T2T_chl.fa</p> <p>Annotation of chloroplast assembly for PN40024: PN_T2T_chl.gff3</p> <p>Citation: </p> <p>Please cite this paper when using the data of PN_T2T for your publications.</p> <p>Xiaoya Shi, Shuo Cao, Xu Wang, Siyang Huang, Yue Wang, Zhongjie Liu, Wenwen Liu, Xiangpeng Leng, Yanling Peng, Nan Wang, Yiwen Wang, Zhiyao Ma, Xiaodong Xu, Fan Zhang, Hui Xue, Haixia Zhong, Yi Wang, Kekun Zhang, Amandine Velt, Komlan Avia, Daniela Holtgräwe, Jérôme Grimplet, José Tomás Matus, Doreen Ware, Xinyu Wu, Haibo Wang, Chonghuai Liu, Yuling Fang, Camille Rustenholz, Zongming Cheng, Hua Xiao, Yongfeng Zhou, The complete reference genome for grapevine (<em>Vitis vinifera</em> L.) genetics and breeding, <em>Horticulture Research</em>, Volume 10, Issue 5, May 2023, uhad061, <a href="https://doi.org/10.1093/hr/uhad061">https://doi.org/10.1093/hr/uhad061</a></p>
Dataset of Impact of pre-breeding feeding practices on rabbit mammary gland development at mid-pregnancy
<p>The dataset includes search results used in article “Impact of pre-breeding feeding practices on rabbit mammary gland development at mid-pregnancy” biorXiv, 2022.01.17.476562, ver. 3 peer-reviewed and recommended by Peer Community in Animal Science. <a href="https://doi.org/10.1101/2022.01.17.476562">https://doi.org/10.1101/2022.01.17.476562</a></p> <p> </p> <p>Search Results Description: Please use Figure 1 from paper to trace the data made available and experimental group.</p> <p>The excel “raw data 2022-06-24” file contains the following data</p> <ol> <li>Body weight of each rabbit on a weekly basis</li> <li>Analysis of breeding parameters at mid-pregnancy</li> <li>Histological areas of each mammry tissue measured</li> <li>Optical density values obtained for biochemical leptin concentration determination</li> <li>Optical density values obtained for biochemical triglyceride concentration determination</li> <li>Optical density values obtained for biochemical glucose concentration determination</li> <li>Optical density values obtained for biochemical cholesterol concentration determination</li> <li>RT-qPCR results (Ct) from QuantStudio export for milk protein analysis</li> <li>RT-qPCR results (Ct) from QuantStudio export for lipid metabolism analysisen</li> </ol> <p>“Statistical analysis.doc” contained the description of the statistics used in Excel and the description of the linear mixed model analysis , the reference of the script available by the CRAN project is also include.The R scipt file for using the linear mixed model in R added with the "data-croissance-analysis" file.</p>
Positions for "First insights into migration routes and nonbreeding sites used by Red-rumped Swallows (Cecropis daurica rufula) breeding in the Iberian Peninsula"
<p><strong>Abstract</strong></p> <p>Using EURING data and geolocation, we describe migration routes and nonbreeding range of Red-rumped Swallows breeding in the Western Palearctic. One bird ringed in southern Spain and recovered in southern Morocco indicates southwestern migration; geolocator data from five birds from central and eastern Iberian Peninsula confirm migration to various nonbreeding sites in sub-Saharan west Africa between Senegal/Mauritania and Ghana. Two swallows showed non-breeding site itinerancy by using more than one nonbreeding site per season. Despite wide ranges in departure for autumn (August- October) and spring migration (February-March), all birds arrived at nonbreeding and breeding sites within ±1-week from each other.</p> <p><strong>Zusammenfassung</strong></p> <p>Erste Einblicke in Zugrouten und Überwinterungsgebiete von Rötelschwalben (<em>Cecropis daurica rufula</em>) der Iberischen Halbinsel.<br> In dieser Studie beschreiben wir Zugrouten und Überwinterungsgebiete westpaläarktischer Rötelschwalben basierend auf EURING- und Geolokations-Daten. Eine Rötelschwalbe, die in Südspanien beringt und im südlichen Marokko wiedergefunden wurde, spricht für einen südwestlichen Zug. Geolokalisation von fünf Vögeln der zentralen und östlichen Iberischen Halbinsel zeigen Überwinterungsorte im sub-Saharischen Westafrika zwischen Senegal/Mauretanien und Ghana. Zwei der getrackten Rötelschwalben nutzten mehrere Überwinterungsplätze pro Saison. Trotz der großen Schwankungsbreite der Abzugszeiten im Herbst (August-Oktober) und im Frühjahr (Februar-März) erreichten die getrackten Vögel ihre Nichtbrut- bzw. Brutplätze innerhalb von 1–2 Wochen.</p>
George Breed (b3515)
<b>-- <a href="https://doi.org/10.5281/zenodo.11582199">Documentation</a> --</b><br><br><u>Name</u>: George Breed<br><u>musiXplora-ID</u>: b3515<br><u>musiXplora-URI</u>: <a href="https://musixplora.de/mxp/b3515">https://musixplora.de/mxp/b3515</a><br><u>Gender</u>: m<br><u>Date of Birth</u>: 1864<br><u>Place of Birth</u>: Undefined<br><u>Date of Death</u>: 1939<br><u>Place of Death</u>: Undefined<br><u>First Mentioned</u>: 1890<br><u>Sectors</u>: Instrumentenbau, Militär<br><u>Professions (Historical)</u>: Erfinder, Gitarrenbauer, Marineoffizier<br><u>Professions (Musical)</u>: Zupfinstrumentenbauer<br><u>Professions (Non-Musical)</u>: Offizier<br><u>Other Places of Activity</u>: USA<br><br><br><u>Titel/Medien:</u><br><table><tbody><tr><th>Role</th><th>Sigel</th><th>Title</th><th>mXp-ID</th></tr><tr><td>Related</td><td>Böhme 2021</td><td>Elektrische und elektrifizierte Gitarren im Deutschen Reich bis zum Ende des Zweiten Weltkriegs. Eine organologische Spurensuche unter Einbeziehung musikalischer, historischer und gesellschaftlicher Faktoren sowie US-amerikanischer Einflüsse. Dissertation der Universität Leipzig. . Erschienen als Enhanced Publication. LM-enc Band 4. Schriftenreihe der Forschungsstelle DIGITAL ORGANOLOGY am Musikinstrumentenmuseum der Universität Leipzig. herausgegeben von Josef Focht</td><td><a href="https://musixplora.de/mxp/5033367">5033367</a></td></tr></tbody></table><br><br><u>Changelog</u>:<br> - v0.0.1: Initial Upload.<br>
Data archive for "Flight behaviour of Red Kites within their breeding area in relation to local weather variables: Conclusions with regard to wind turbine collision mitigation"
<p>The archive contains the data files to reproduce the results presented in the article “Flight behaviour of Red Kites within their breeding area in relation to local weather variables: Conclusions with regard to wind turbine collision mitigation” published in the Journal of Applied Ecology.</p>
LBBG_ZEEBRUGGE - Lesser black-backed gulls (Larus fuscus, Laridae) breeding at the southern North Sea coast (Belgium and the Netherlands)
<p><em>LBBG_ZEEBRUGGE - Lesser black-backed gulls (Larus fuscus, Laridae) breeding at the southern North Sea coast (Belgium and the Netherlands)</em> is a bird tracking dataset published by the <a href="https://www.inbo.be/en">Research Institute for Nature and Forest (INBO)</a>. It contains animal tracking data collected by the LifeWatch GPS tracking network for large birds (<a href="http://lifewatch.be/en/gps-tracking-network-large-birds">http://lifewatch.be/en/gps-tracking-network-large-birds</a>) for the project/study <strong>LBBG_ZEEBRUGGE</strong>, using trackers developed by the University of Amsterdam Bird Tracking System (UvA-BiTS, <a href="http://www.uva-bits.nl">http://www.uva-bits.nl</a>). The study has been operational from 2013 until 2023. In total 162 individuals of lesser black-backed gull (<em>Larus fuscus</em>) have been tagged in or near their breeding area at the southern North Sea coast (Zeebrugge and Ostend in Belgium and Vlissingen in the Netherlands), mainly to study their habitat use and migration behaviour. Data are periodically uploaded from the UvA-BiTS database to Movebank and from there archived on Zenodo (see <a href="https://github.com/inbo/bird-tracking">https://github.com/inbo/bird-tracking</a>). No new data are expected.</p> <h2>Files</h2> <p>Data in this package are exported from Movebank study <a href="https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study985143423">985143423</a>. Fields in the data follow the <a href="http://vocab.nerc.ac.uk/collection/MVB">Movebank Attribute Dictionary</a> and are described in <code>datapackage.json</code>. Files are structured as a <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Package</a>. You can access all data in R via <code>https://zenodo.org/records/12336021/files/datapackage.json</code> using <a href="https://frictionlessdata.github.io/frictionless-r/">frictionless</a>.</p> <ul> <li><strong>datapackage.json</strong>: technical description of the data files.</li> <li><strong>LBBG_ZEEBRUGGE-reference-data.csv</strong>: reference data about the animals, tags and deployments.</li> <li><strong>LBBG_ZEEBRUGGE-gps-yyyy.csv.gz</strong>: GPS data recorded by the tags, grouped by year.</li> <li><strong>LBBG_ZEEBRUGGE-acceleration-yyyy.csv.gz</strong>: acceleration data recorded by the tags, grouped by year.</li> </ul> <h2>Acknowledgements</h2> <p>This dataset was collected using infrastructure provided by VLIZ and INBO funded by Research Foundation - Flanders (FWO) as part of the Belgian contribution to LifeWatch.</p>
Mass mortality among colony-breeding seabirds in the German Wadden Sea in 2022 due to distinct genotypes of HPAIV H5N1 clade 2.3.4.4b: data sets on phylogeographic analyses
<p>Highly pathogenic avian influenza viruses (HPAIV) of clade 2.3.4.4b of the H5 goose/Guangdong (gs/GD) lineage have repeatedly emerged in Germany since 2016. Both poultry holdings and wild birds have been heavily hit but the 2020-2021 and 2021-2022 HPAI winter seasons exceeded all previously recorded epizootics in Germany in terms of number of wild bird cases recorded, genetic diversity of viruses, and duration of virus activity. In past seasons regional massing of wild bird cases were seen at the German coasts of the Baltic and North Sea, but species mainly affected varied from season to season. In 2022 a new and, in Europe, unprecedented aspect was observed when several cormorant and seabird breeding colonies became affected since May at the Baltic Sea coast and in the Wadden Sea, respectively by HPAI H5N1 viruses.</p> <p> </p>
Supplementary data: Breeding wheat for organic farming: can the high grain protein gene Gpc-B1 help to tackle challenges in view of end-use quality?
<p>Agronomic and quality data of organic wheat (<em>Triticum aestivum</em>), mean comparisons and supplementary figures related to the publication "Breeding wheat for organic farming: can the high grain protein gene Gpc-B1 help to tackle challenges in view of end-use quality?" by Grausgruber et al. (2024) published in the Journal of Cereal Science.</p>
LBBG_ADULT - Lesser black-backed gulls (Larus fuscus, Laridae) breeding in Belgium
<p><em>LBBG_ADULT - Lesser black-backed gulls (Larus fuscus, Laridae) breeding in Belgium</em> is a bird tracking dataset published by the <a href="https://www.inbo.be/en">Research Institute for Nature and Forest (INBO)</a>. It contains animal tracking data collected by the LifeWatch GPS tracking network for large birds (<a href="http://lifewatch.be/en/gps-tracking-network-large-birds">http://lifewatch.be/en/gps-tracking-network-large-birds</a>) for the project/study <strong>LBBG_ADULT</strong>, using trackers developed by Ornitela (<a href="https://www.ornitela.com/">https://www.ornitela.com</a>). The study has been operational since 2022. In total 39 individuals of lesser black-backed gull (<em>Larus fuscus</em>) have been tagged in the breeding colony of Zeebrugge in Belgium, mainly to study their habitat use and migration behaviour. Data are automatically synced with Movebank and from there periodically archived on Zenodo (see <a href="https://github.com/inbo/bird-tracking">https://github.com/inbo/bird-tracking</a>).</p> <h2>Files</h2> <p>Data in this package are exported from Movebank study <a href="https://www.movebank.org/cms/webapp?gwt_fragment=page%3Dstudies%2Cpath%3Dstudy2298738353">2298738353</a>. Fields in the data follow the <a href="http://vocab.nerc.ac.uk/collection/MVB">Movebank Attribute Dictionary</a> and are described in <code>datapackage.json</code>. Files are structured as a <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Package</a>. You can access all data in R via <code>https://zenodo.org/records/17292786/files/datapackage.json</code> using <a href="https://frictionlessdata.github.io/frictionless-r/">frictionless</a>.</p> <ul> <li><strong>datapackage.json</strong>: technical description of the data files.</li> <li><strong>LBBG_ADULT-reference-data.csv</strong>: reference data about the animals, tags and deployments.</li> <li><strong>LBBG_ADULT-gps-yyyy.csv.gz</strong>: GPS data recorded by the tags, grouped by year.</li> </ul> <h2>Acknowledgements</h2> <p>This dataset was collected using infrastructure provided by INBO and funded by Research Foundation - Flanders (FWO) as part of the Belgian contribution to LifeWatch.</p>
Tracking data for breeding Curlew (Numenius arquata) in north Wales, UK
<p>This dataset of GPS tracking data for Eurasian Curlew (Numenius arquata) forms the basis of the analysis carried out in Bowgen, K. M., Dodd, S. G., Lindley, P., Burton, N. H. K., & Taylor, R. C. (2022). Curves for Curlew: Identifying Curlew breeding status from GPS tracking data. Ecology and Evolution, 12, e9509. https://doi.org/10.1002/ece3.9509.</p> <p>This paper details a new method to assign breeding status to individual birds during their full breeding season. All points are spatially anonymised but the analyses in the associated paper are replicable with this dataset as it only requires spatial and temporal relationships between the points rather than to a specific landscape.</p> <p>Data permissions are held jointly between BTO, National Resources Wales and Royal Society for the Protection of Birds as the funders and collaborators of the project. The study is open to collaboration with the full spatially referenced dataset following application to the BTO via the lead authors.</p> <p>........................................................................................</p> <p>We would also greatly appreciate if you could fill out <a href="https://forms.gle/DCc58VXpdmqnTmTk8" target="_blank" rel="noopener">this very short form</a> to tell us how you intend to use these data. Thanks in advance!</p>
Supplementary data for "Influence of prey availability on habitat selection during the non-breeding period in a resident bird of prey"
<p><strong>Abstract</strong></p> <p>Background: For resident birds of prey in the temperate zone, the cold non-breeding period can have strong impacts on survival and reproduction with implications for population dynamics. Therefore, the non-breeding period should receive the same attention as other parts of the annual life cycle. Birds of prey in intensively managed agricultural areas are repeatedly confronted with unpredictable, rapid changes in their habitat due to agricultural practices such as mowing, harvesting, and ploughing. Such a dynamic landscape likely affects prey distribution and availability and may even result in changes in habitat selection of the predator throughout the annual cycle.</p> <p>Methods: In the present study, we 1) quantified barn owl prey availability in different habitats across the annual cycle, 2) quantified the size and location of barn owl breeding and non-breeding home ranges using GPS-data, 3) assessed habitat selection in relation to prey availability during the non-breeding period, and 4) discussed differences in habitat selection during the non-breeding period to habitat selection during the breeding period.</p> <p>Results: The patchier prey distribution during the non-breeding period compared to the breeding period led to habitat selection towards grassland during the non-breeding period. The size of barn owl home ranges during breeding and non-breeding were similar, but there was a small shift in home range location which was more pronounced in females than males. The changes in prey availability led to a mainly grassland-oriented habitat selection during the non-breeding period. Further, our results showed the importance of biodiversity promotion areas and undisturbed field margins within the intensively managed agricultural landscape. </p> <p>Conclusions: We showed that different prey availability in habitat categories can lead to changes in habitat preference between the breeding and the non-breeding period. Given these results we show how important it is to maintain and enhance structural diversity in intensive agricultural landscapes, to effectively protect birds of prey specialised on small mammals. Hereafter we provide the datasets and R script to reproduce the resource selection functions.</p>
Breeding Bird Community Surveys in the Huron Mountains, Marquette Co., Michigan (1997-1999).
Dr. Michael Kielb and collaborators conducted repeated surveys in June and July of 1997, 1998, and 1999, of breeding-bird communities along seven permanent transects in diverse habitats (old-growth forests, secondary forests, wetlands, riverine systems, etc.) within the boundaries of the Huron Mt. Club. Permanent 'listening-points' were established along each transect at intervals of ca. 200 m (7-20 points per transect), and numbers of singing birds tallied at each point. Data reported here are totals, by species, per transect. Detailed information on transect and point locations may be found in attached documents (reports to the Huron Mountain Wildlife Foundation) in .pdf format. Documents also include additional ad hoc observations. This study was repeated in 2020-2021, using the same transects and sampling points, by Ryan Buron and Harrison Jones, then graduate students at University of Florida; data from this follow-up study will be archived at EDI as a separate data-package.
Itasca Biological Station Bear Paw Point Breeding Bird Census, MN (1979-2025)
This dataset is part of an ongoing effort that began in 1979 at the University of Minnesota Itasca Biological Station to conduct an annual census of breeding bird territories on Bear Paw Point every spring. Students enrolled in Field Ornithology used an established 50x50 meter grid (11.5 hectares total plot size) and walked gridlines, identifying bird songs and estimating the number of singing males heard to determine the number of breeding territories for different species present on Bear Paw Point.
Itasca Biological Station Wilderness Loop Breeding Bird Survey, MN (1979 - 2025)
This dataset is part of an ongoing effort that began in 1979 at the University of Minnesota Itasca Biological Station to conduct a springtime annual survey of breeding birds around the Wilderness Loop drive in Itasca State Park. Following traditional USGS Breeding Bird Survey methods, Field Ornithology students conduct 3-minute point counts along an established route with 18 stops approximately 0.5 miles apart in distance. Students then recorded the species and number of birds seen and heard within a 0.25 radius.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.