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39 results for “Coimbra”
Poblado de Coimbra del Barranco Ancho - Jumilla
El yacimiento ibérico esta formado por el Poblado, un santuario y un grupo de tres necrópolis de incineración (el Poblado , la Senda y el Barranco). El Poblado se sitúa en el primer tercio de la falda norte y sureste del cerro del Maestre, entre 700 y 825 m. sobre el nivel del mar. El Santuario se ubica geográficamente en un lugar idóneo para sus fines coronando una colina a dos vertientes en un espacio abierto pero conexionando con todo el conjunto. Muy cercanas al poblado se hallan las tres necrópolis: la del Barranco , que se asienta al Oeste del Poblado, en el fondo del Barranco que da nombre a Coimbra; la del Poblado, que recibe este apelativo por encontrarse muy cerca del hábitat, limitada al oeste por las estructuras de habitación más tardías, al sur por una pequeña cresta rocosa, al Norte por un acantilado y al Este por una torrentera. Source: Objaverse 1.0 / Sketchfab
Homogenized monthly datasets of all geomagnetic components of Coimbra observatory for the time period 1866-2015
<p>Homogenized monthly values of all geomagnetic components (D, I, H, X, Y, Z, F) of Coimbra observatory for the period 1866-2015. The homogenization procedures applied to the geomagnetic time series of Coimbra observatory is presented and discussed in Morozova et al. 2020, submitted to Earth System Science Data (ESSD).</p>
Casa M de Coimbra del Barranco Ancho - Jumilla
https://www.um.es/coimbra/ Source: Objaverse 1.0 / Sketchfab
Figure 3 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Figure 3 - Analysis of the MIxS-BE "building occupancy type" (type of building where the underlying sample was taken).
Figure 2 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Figure 2 - Krona chart of the taxonomic affiliation of the BMS sequences down to order level. The Krona chart lists all annotated BMS sequences except those classified as Fungi sp. (36.4%) and those of non-fungal origin (0.9%). An interactive version of the Krona chart is provided as Suppl. material 3. The figure includes pre-existing data plus the data added during the workshop, such that these charts indicate the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2016. Sequences that were not annotated with a single built environment-related term in the INSDC were not included in this effort, and are not represented in these charts.
Figure 1 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Figure 1 - Analysis of the BMS sequences for country of collection. Country centroids marked with bubbles of different size on the global map indicate the number of BMS sequences originating from these countries (54 distinct countries, sequence count ranging from 1 to 2,914). For an additional 2.9% of the sequences, country information could not be restored during the workshop. The figure includes pre-existing data plus the data added during the workshop, such that these charts indicate the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2016. Sequences that were not annotated with a single built environment-related term in the INSDC were not included in this effort, and are not represented in these charts.
Supplementary material 1 from: Trovão J, Tiago I, Soares F, Paiva DS, Mesquita N, Coelho C, Catarino L, Gil F, Portugal A (2019) Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminium ludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal. MycoKeys 45: 57-73. https://doi.org/10.3897/mycokeys.45.31799
: Data type: species data
Figure 2 from: Trovão J, Tiago I, Soares F, Paiva DS, Mesquita N, Coelho C, Catarino L, Gil F, Portugal A (2019) Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminium ludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal. MycoKeys 45: 57-73. https://doi.org/10.3897/mycokeys.45.31799
Figure 2 Aeminiumludgeria Colony appearance on PDA b Colony appearance on MEA+10% NaCl (w/v) c Colony appearance on DG-18 d Colony appearance on PDA after maturation e Colony appearance on MEA+10% NaCl (w/v) after maturation f Colony appearance on DG-18 after maturation g Initial simple, branched, septate hyphae becoming toruloid-like (scale 20 μm) h Differentiated, toruloid-like hyphae and mature chains of arthroconidia (scale 50 μm) i Intercalary and terminal conidial chains (scale 20 μm); j typical aspect of arthroconidia (scale 20 μm)
Supplementary material 5 from: Trovão J, Tiago I, Soares F, Paiva DS, Mesquita N, Coelho C, Catarino L, Gil F, Portugal A (2019) Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminium ludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal. MycoKeys 45: 57-73. https://doi.org/10.3897/mycokeys.45.31799
: Data type: species data
Figure 1 from: Trovão J, Tiago I, Soares F, Paiva DS, Mesquita N, Coelho C, Catarino L, Gil F, Portugal A (2019) Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminium ludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal. MycoKeys 45: 57-73. https://doi.org/10.3897/mycokeys.45.31799
Figure 1 Bayesian 50% majority rule consensus tree based on an LSU/rpb2/ITS concatenated alignment, containing representative sequences from the order Capnodiales. The new strains are shown in bold. Bayesian posterior probabilities (BP) ≥ 0.95 are presented at the nodes. The tree was rooted to Parastagonosporanodorum CBS 110109. The scale bar specifies 0.2 expected changes per site.
Supplementary material 4 from: Trovão J, Tiago I, Soares F, Paiva DS, Mesquita N, Coelho C, Catarino L, Gil F, Portugal A (2019) Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminium ludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal. MycoKeys 45: 57-73. https://doi.org/10.3897/mycokeys.45.31799
: Data type: statistical data
Supplementary material 3 from: Trovão J, Tiago I, Soares F, Paiva DS, Mesquita N, Coelho C, Catarino L, Gil F, Portugal A (2019) Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminium ludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal. MycoKeys 45: 57-73. https://doi.org/10.3897/mycokeys.45.31799
: Data type: statistical data
Supplementary material 2 from: Trovão J, Tiago I, Soares F, Paiva DS, Mesquita N, Coelho C, Catarino L, Gil F, Portugal A (2019) Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminium ludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal. MycoKeys 45: 57-73. https://doi.org/10.3897/mycokeys.45.31799
: Data type: phylogenetic data
Figure 4 from: Nilsson RH, Wurzbacher C, Bahram M, Coimbra VRM, Larsson E, Tedersoo L, Eriksson J, Duarte Ritter C, Svantesson S, Sánchez-García M, Ryberg M, Kristiansson E, Abarenkov K (2016) Top 50 most wanted fungi. MycoKeys 12: 29-40. https://doi.org/10.3897/mycokeys.12.7553
Figure 4 - Geographical distribution of the top 50 most wanted fungi at the phylum, class, and order level. Each fungal sequence was assigned to country of origin according to its INSDC entry (or underlying publication as applicable) and then summarized based on the continents: Africa (dark blue), Antarctica (green), Asia (grey), Australia (yellow), Europe (orange), North America (light blue), and South America (blue).
Figure 5 from: Nilsson RH, Wurzbacher C, Bahram M, Coimbra VRM, Larsson E, Tedersoo L, Eriksson J, Duarte Ritter C, Svantesson S, Sánchez-García M, Ryberg M, Kristiansson E, Abarenkov K (2016) Top 50 most wanted fungi. MycoKeys 12: 29-40. https://doi.org/10.3897/mycokeys.12.7553
Figure 5 - The most common substrates associated with the top 50 most wanted fungi at the phylum, class, and order level. Each fungal sequence was assigned to substrate according to its GenBank entry (or underlying publication as applicable). The major substrates included soil (light blue), living plants (blue), mycorrhiza (orange), dust (green), lichen (dark blue), dead wood (red), and other (grey). To improve readability, rare substrates (<3 occurrences) were merged into the 'other' category.
Figure 3 from: Nilsson RH, Wurzbacher C, Bahram M, Coimbra VRM, Larsson E, Tedersoo L, Eriksson J, Duarte Ritter C, Svantesson S, Sánchez-García M, Ryberg M, Kristiansson E, Abarenkov K (2016) Top 50 most wanted fungi. MycoKeys 12: 29-40. https://doi.org/10.3897/mycokeys.12.7553
Figure 3 - Web-based third-party taxonomic annotation of the sequences in a species hypothesis is demonstrated. Third-party annotation requires non-anonymous registration, and such annotations are subject to peer review. Annotations are tagged with the name of the annotator as well as the date. Multiple annotations for individual entries are supported.
Figure 1 from: Nilsson RH, Wurzbacher C, Bahram M, Coimbra VRM, Larsson E, Tedersoo L, Eriksson J, Duarte Ritter C, Svantesson S, Sánchez-García M, Ryberg M, Kristiansson E, Abarenkov K (2016) Top 50 most wanted fungi. MycoKeys 12: 29-40. https://doi.org/10.3897/mycokeys.12.7553
Figure 1 - A web-based screenshot of the upper part of the top 50 list of compound clusters where all sequences are unidentified at the phylum level. The clusters are ordered by the number of contributing studies in this screenshot.
Figure 2 from: Nilsson RH, Wurzbacher C, Bahram M, Coimbra VRM, Larsson E, Tedersoo L, Eriksson J, Duarte Ritter C, Svantesson S, Sánchez-García M, Ryberg M, Kristiansson E, Abarenkov K (2016) Top 50 most wanted fungi. MycoKeys 12: 29-40. https://doi.org/10.3897/mycokeys.12.7553
Figure 2 - A compound cluster displayed in the web browser of the user. The INSDC accession numbers and their taxonomic annotation are shown in columns 1 and 2. The DNA source and the country of collection are shown in columns 3 and 4. Column 5 shows the inclusiveness of the species hypotheses at the 97% similarity level (rightmost filled column), the 97.5% similarity level (second-to-rightmost filled column), and so on up to 100% similarity. The aligned sequence data are shown in column 6.
The Cohort for Patient-reported Outcomes, Imaging and Trial Inclusion in Metastatic BRAin Disease (COIMBRA)
ClinicalTrials.gov study NCT05267158. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
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