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44 results for “Cytochrome oxidase 1”
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I in Anacroneuria flintorum Froehlich 2002 (Plecoptera: Perlidae): Notes, distribution, and life stages association using molecular tools
FIGURE 1. Neighbor-joining tree for cytochrome c oxidase subunit I (COI) sequences (433 bp) from Anacroneuria flintorum Froehlich and related stoneflies from Espírito Santo and São Paulo States, Brazil, modeled by Kimura-2-parameter (K2P).
Figure 1 in Molecular characterisation of leeches (Clitellata, Annelida) based on the mitochondrial cytochrome oxidase I (COI) gene region for Turkish fauna
Figure 1. Map of showing the areas surveyed for the occurrence of leeches. Wetlands where the species was found are indicated with dots.
FIG. 6. A majority-rule consensus gene tree reconstructed from mtDNA cytochrome oxidase 1 in Redescription and Recognition of Etheostoma cyanorum from Blue River, Oklahoma
FIG. 6. A majority-rule consensus gene tree reconstructed from mtDNA cytochrome oxidase 1 (CO1) sequence data obtained from the Barcode of Life Database (BOLD). Maximum-likelihood (ML) and Bayesian trees had identical topologies. Branch lengths are proportional to inferred mutations. Shading of lineages represents samples from E. whipplei (outgroup) in black, E. cyanorum in gray, and E. radiosum in white. ML bootstrap proportions/ Bayesian posterior probabilities are reported. See Data Accessibility for tree file.
FIGURE 2. The Neighbor-Joining tree for the cytochrome oxidase c subunit 1 in Mitochondrial diversity of the white-toothed shrews (Mammalia, Eulipotyphla, Crocidura) in Vietnam
FIGURE 2. The Neighbor-Joining tree for the cytochrome oxidase c subunit 1 (COI) gene fragment. The bootstrap values (≥ 50 %) obtained from 1000 pseudoreplications are presented above the branches. Crocidura olivieri is used as outgroup.
FIGURE 1 in Phylogenetic relationships among Unionicola (Acari: Unionicolidae) mussel-mites of North America based on mitochondrial cytochrome oxidase I sequences
FIGURE 1. Maximum-parsimony (MP; PAUP*4.0b10, Swofford 2002) tree showing phylogenetic relationships among subgenera of Unionicola spp. from North American that occur in association with freshwater mussels based on morphological and life history characters, excluding those related to sites of egg deposition. The analysis revealed 17 parsimony informative characters. Heuristic searches yielded 8 equally parsimonious trees with a length of 39 steps (CI=0.72). Bootstrap (100 pseudoreplicates) support values>50% from MP analysis are reported above the branches.
FIGURE 1 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 1. Phylogeny of the Chinese Prionini based on partial sequences of 12S rRNA. A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values, Wtd. S.S. = 0.0787, APSD = 4.741, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values, -Ln likelihood = 2748.8839, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values, tree length = 499, CI = 0.7054, RI = 0.3849, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities, the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
Figure 1. Neighbour-joining tree deduced from the cytochrome c oxidase subunit I in DNA barcoding and morphology reveal exceptional species diversity of Scoparia (Lepidoptera: Crambidae) from the Hailuogou Glacier area, China
Figure 1. Neighbour-joining tree deduced from the cytochrome c oxidase subunit I (COI) gene sequences using MEGA 5. Sequences were corrected with the Kimura two-parameter substitution model. Codon positions included were 1st + 2nd + 3rd + noncoding. Values represented at the nodes of branches are bootstrap values (1000 replicates).
Figure 3. Maximum likelihood topologies. A, cytochrome oxidase 1 fragments. B, internal transcribed spacer fragment. C, combined data set. Bootstrap supports over 75 in Integrative taxonomy of Parasabella and Sabellomma (Sabellidae: Annelida) from Australia: description of new species, indication of cryptic diversity, and translocation of some species out of their natural distribution range
Figure 3. Maximum likelihood topologies. A, cytochrome oxidase 1 fragments. B, internal transcribed spacer fragment. C, combined data set. Bootstrap supports over 75% shown on nodes. Scale bar, average of nucleotide substitutions per site.
Figure 1. Best selected tree from a maximum likelihood reconstruction for the cytochrome c oxidase subunit I in Integrating DNA and morphological taxonomy to describe diversity in poorly studied microscopic animals: new species of the genus Abrochtha Bryce, 1910 (Rotifera: Bdelloidea: Philodinavidae)
Figure 1. Best selected tree from a maximum likelihood reconstruction for the cytochrome c oxidase subunit I data set under the general time reversible model with gamma distribution, displaying all compatible groupings and with average branch lengths proportional to numbers of substitutions per site, indicated by the scale bar. Bootstrap support values above 80% are shown below each branch; posterior probabilities above 0.8 from 36 000 sampled trees from the Bayesian analysis are shown above each branch. Support values for within-species relationships are not shown. Filled circles indicate clades (and singlets) identified by the 4¥ rule; open diamonds indicate clades (and singlets) identified by the generalized mixed yule coalescent model. Names refer to the species and the clonal populations.
FIGURE 1. Neighbor-joining tree derived from mitochondrial cytochrome oxidase 1 in Identification of early life-history stages of Caribbean Apogon (Perciformes: Apogonidae) through DNA Barcoding
FIGURE 1. Neighbor-joining tree derived from mitochondrial cytochrome oxidase 1 sequences showing genetic lineages of Apogon species from Bahamas (BAH), Belize (BLZ), Curaçao (CUR), Florida (FCC, FWRI, SMS), and Saba Bank (SAB). L = larva, J = juvenile, A = adult.
Figure 2. The cytochrome c oxidase 1 in Evidence Of A Putative Novel Species Of Avian Schistosome Infecting Planorbella Trivolvis
Figure 2. The cytochrome c oxidase 1 (COI) phylogenetic tree including members of the avian Schistosomatidae. Nodal support indicated by Bayesian posterior probabilities. GenBank accession numbers precede taxon names. The representative sample from this study is in bold.
Supplementary material 1 from: Hrabina P, Pernerová L, Suchomel J, Robovský J (2023) Utility of cytochrome c oxidase I for the deciphering of unstable phylogeny and taxonomy of gorals, genus Nemorhaedus Hamilton Smith, 1827 (Bovidae, Ovibovina). ZooKeys 1181: 81-110. https://doi.org/10.3897/zookeys.1181.108019
Goral species recognized in the 20th and 21st centuries across several basic sources, which seemed to assess gorals independently and/or using different data
Data from: Cytochrome c oxidase subunit 1 barcode data of fish of the Nayband National Park in the Persian Gulf and analysis using meta-data flag several cryptic species
Open the record for dataset details and reuse information.
Data from: Rapid and accurate taxonomic classification of insect (Class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier
Open the record for dataset details and reuse information.
FIGURE 6. Male genitalia with crista succuli approximately 1 in Recognition of a new species of Carmenta from New Mexico supported by morphology and mitochondrial cytochrome oxidase I data (Lepidoptera: Sesiidae: Sesiinae: Synanthedonini)
FIGURE 6. Male genitalia with crista succuli approximately 1/2 the length of the right valve.
Figures 2–3. Mitochondrial cytochrome c oxidase subunit 1 in Molecular confirmation of the occurrence of Anguilla interioris (Actinopterygii: Anguilliformes) in North Maluku of Indonesia and mitochondrial DNA haplotype diversity among existing specimens
Figures 2–3. Mitochondrial cytochrome c oxidase subunit 1 (CO1) 551 bp sequence analyses. (2) Phylogenetic analysis based on maximum likelihood algorithm with the sample codes, GenBank or BOLD accession numbers and sample sites shown. Bootstrap percentages are shown at the tree nodes. (3) Haplotype network with the haplotypes labelled as H1 to H9. The circle size is proportional to the number of samples, and different sample sites are represented by different colours. Small white circle represents median vector which is the hypothesized or missing haplotype. Each dash on the line symbolizes one mutational step.
Figure 3 in A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes
Figure 3. Inferred phylogenetic relationships based on nucleotide sequence of mitochondrial CO1 genes using BI (A) and ML (B) analyses. A. distinguendus was used as the outgroup.
Figure 3. A neighbor joining tree using cytochrome c oxidase subunit 1 in DNA barcoding of black cherry aphid Myzus cerasi (Fabricus, 1775) (Hemiptera: Aphididae) populations collected from Prunus avium and Prunus cerasus
Figure 3. A neighbor joining tree using cytochrome c oxidase subunit 1 sequences from Myzus cerasi populations.
Supplementary material 1 from: Gariepy TD, Musolin DL, Konjević A, Karpun NN, Zakharchenko VY, Zhuravleva EN, Tavella L, Bruin A, Haye T (2021) Diversity and distribution of cytochrome oxidase I (COI) haplotypes of the brown marmorated stink bug, Halyomorpha halys Stål (Hemiptera, Pentatomidae), along the eastern front of its invasive range in Eurasia. NeoBiota 68: 53-77. https://doi.org/10.3897/neobiota.68.68915
Table S1. Collection information and GPS coordinates
Figure 1 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 1 - A map of Japan with the distribution of nine genera of Japanese Podismini.
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