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ShareScore release 0.9.0
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157 results for “DNA Polymerase”
Figure 2 from: Todorova N, Rangelov M, Dincheva I, Badjakov I, Enchev V, Markova N (2022) Potential of hydroxybenzoic acids from Graptopetalum paraguayense for inhibiting of herpes simplex virus DNA polymerase – metabolome profiling, molecular docking and quantum-chemical analysis. Pharmacia 69(1): 113-123. https://doi.org/10.3897/pharmacia.69.e79467
Figure 2 Phenolic (trans-ferulic) acid and its vicinity after docking procedure. The amino acid residues of HSV-1 DNA polymerase active site, mostly involved in interaction with ligands, are represented as follows: Lis928 is basic amino acid right from the ligand, Glu 927 is above it, basic amino acid on the left is Lis 939 and Asp 886 is in its right.
Supplementary material 1 from: Todorova N, Rangelov M, Dincheva I, Badjakov I, Enchev V, Markova N (2022) Potential of hydroxybenzoic acids from Graptopetalum paraguayense for inhibiting of herpes simplex virus DNA polymerase – metabolome profiling, molecular docking and quantum-chemical analysis. Pharmacia 69(1): 113-123. https://doi.org/10.3897/pharmacia.69.e79467
Tables S1–S3 and Figures S1–S4
Figure 8 from: Todorova N, Rangelov M, Dincheva I, Badjakov I, Enchev V, Markova N (2022) Potential of hydroxybenzoic acids from Graptopetalum paraguayense for inhibiting of herpes simplex virus DNA polymerase – metabolome profiling, molecular docking and quantum-chemical analysis. Pharmacia 69(1): 113-123. https://doi.org/10.3897/pharmacia.69.e79467
Figure 8 Complex of acyclovir triphosphate and amino acids from DNA polymerase active site, optimized at B3LYP/6-31+G(d,p) level.
Figure 7 from: Todorova N, Rangelov M, Dincheva I, Badjakov I, Enchev V, Markova N (2022) Potential of hydroxybenzoic acids from Graptopetalum paraguayense for inhibiting of herpes simplex virus DNA polymerase – metabolome profiling, molecular docking and quantum-chemical analysis. Pharmacia 69(1): 113-123. https://doi.org/10.3897/pharmacia.69.e79467
Figure 7 Complexes of phenolic acids from GP phenolic fraction "C" and amino acids from DNA polymerase active site, optimized at B3LYP/6-31+G(d,p) level.
Figure 5 from: Todorova N, Rangelov M, Dincheva I, Badjakov I, Enchev V, Markova N (2022) Potential of hydroxybenzoic acids from Graptopetalum paraguayense for inhibiting of herpes simplex virus DNA polymerase – metabolome profiling, molecular docking and quantum-chemical analysis. Pharmacia 69(1): 113-123. https://doi.org/10.3897/pharmacia.69.e79467
Figure 5 Structures of hydroxybenzoic acids from GP phenolic fraction "C", optimized at B3LYP/6-31+G(d,p) level.
Supplementary material 1 from: Nagai S, Sildever S, Nishi N, Tazawa S, Basti L, Kobayashi T, Ishino Y (2022) Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding. Metabarcoding and Metagenomics 6: e77704. https://doi.org/10.3897/mbmg.6.77704
Table S1–S3
Supplementary material 3 from: Nagai S, Sildever S, Nishi N, Tazawa S, Basti L, Kobayashi T, Ishino Y (2022) Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding. Metabarcoding and Metagenomics 6: e77704. https://doi.org/10.3897/mbmg.6.77704
same_tophit_count_merge.pl
Supplementary material 2 from: Nagai S, Sildever S, Nishi N, Tazawa S, Basti L, Kobayashi T, Ishino Y (2022) Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding. Metabarcoding and Metagenomics 6: e77704. https://doi.org/10.3897/mbmg.6.77704
merge_tophit_count.pl
Supplementary material 4 from: Nagai S, Sildever S, Nishi N, Tazawa S, Basti L, Kobayashi T, Ishino Y (2022) Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding. Metabarcoding and Metagenomics 6: e77704. https://doi.org/10.3897/mbmg.6.77704
blastxml_parser
Data from: Structural consequence of the most frequently recurring cancer-associated substitution in DNA polymerase ε
Open the record for dataset details and reuse information.
DNA polymerase POLD1 promotes proliferation and metastasis of bladder cancer by stabilizing MYC
GEO Series GSE200897. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation (smallRNA-seq dataset)
GEO Series GSE165574. Arabidopsis thaliana. 45 samples. Type: Non-coding RNA profiling by high throughput sequencing.
DNA polymerase epsilon interacts with SUVH2/9 to mediate meiotic DSB associated gene silencing beyond DNA methylation in Arabidopsis [BiSulfite-seq]
GEO Series GSE203263. Arabidopsis thaliana. 14 samples. Type: Methylation profiling by high throughput sequencing.
ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation
GEO Series GSE149760. Homo sapiens. 101 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
GEO Series GSE124747. Arabidopsis thaliana. 40 samples. Type: Expression profiling by high throughput sequencing.
DNA polymerase epsilon interacts with SUVH2/9 to mediate meiotic DSB associated gene silencing beyond DNA methylation in Arabidopsis
GEO Series GSE203328. Arabidopsis thaliana. 46 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Checkpoint-mediated DNA polymerase e exonuclease activity curbing counteracts resection-driven fork collapse
GEO Series GSE156480. Saccharomyces cerevisiae. 46 samples. Type: Other.
Single-cell mitochondrial genotyping of exonuclease-deficient DNA polymerase γ (POLGD274A) knock-in HEK293 cell lines
GEO Series GSE291877. Homo sapiens. 7 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Regulation of the error-prone DNA polymerase polκ by oncogenic signaling and its contribution to drug resistance
GEO Series GSE145313. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Release of paused RNA-Polymerase II at specific introns and chromatin domains favors spontaneous DNA double strand break formation and predicts cancer translocations [RNA-seq]
GEO Series GSE93039. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
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International Brain Laboratory public data
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OpenNeuro
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