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Figure 4. Approximate distributions and associated divergence times for A in Mitochondrial Dna Sequence Data Indicate Evidence For Multiple Species Within Peromyscus Maniculatus
Figure 4. Approximate distributions and associated divergence times for A) Peromyscus maniculatus-like ancestor; B) P. melanotis-like ancestor; C) P. gambelii/keeni/sejugis/sp.-like ancestor; D) P. polionotus-like ancestor; E) P. sonoriensis-like ancestor; F) P. labecula and P. maniculatus - like ancestor; G) P. keeni/sp.-like ancestor; and H) P. keeni-like, P. gambelii-like, P. sejugis-like, and P. sp.-like ancestors. Divergence times were estimated from the BEAST analysis (Version 2.4, Bouckaert et al. 2014) of the mitochondrial cytochrome-b gene dataset (see Fig. 3). Shading schemes that correspond to species distributions are shown in the inset.
Figure 1 in Mitochondrial Dna Sequence Data Indicate Evidence For Multiple Species Within Peromyscus Maniculatus
Figure 1. Distribution of selected populations and species of the Peromyscus maniculatus species group from Canada, Mexico, and the United States. Shaded areas represent distributions of taxa (defined in figure insert) as originally defined by Hall (1981) and modified based on the results of this study. Closed circles represent collecting localities listed in the Appendix; note that multiple individuals may be represented by a single closed circle. White boxes with black stars indicate type localities for each taxon and triangles indicate localities where haplotypes representing P. sonoriensis were found to be in sympatry with samples of P. gambelii and P. labecula, respectively.
Figure 3 in Mitochondrial Dna Sequence Data Indicate Evidence For Multiple Species Within Peromyscus Maniculatus
Figure 3. Time-calibrated ultrametric tree obtained from the BEAST analysis (Version 2.4, Bouckaert et al. 2014) of the mitochondrial cytochrome-b gene dataset. Scale bars at nodes represent the 95% highest posterior densities and numbers associated to each node are the estimated divergence times in million years ago.
Phertilizer: growing a clonal tree from single-cell DNA sequencing data of tumors
<p>The is the supplementary data repository for the simulation input data for Phertilizer: growing a clonal tree from single-cell DNA sequencing data of tumors.</p>
Linked collectors and determiners for: Pollen characters and DNA sequence data converge on a monophyletic genus Iresine (Amaranthaceae, Caryophyllales) and help to elucidate its species diversity.
Natural history specimen data linked to collectors and determiners held within, "Pollen characters and DNA sequence data converge on a monophyletic genus Iresine (Amaranthaceae, Caryophyllales) and help to elucidate its species diversity". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/a2afe874-9ec7-4101-8f63-da98506a340b">https://bionomia.net/dataset/a2afe874-9ec7-4101-8f63-da98506a340b</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/a2afe874-9ec7-4101-8f63-da98506a340b">https://gbif.org/dataset/a2afe874-9ec7-4101-8f63-da98506a340b</a>. Formatted as a Frictionless Data package.
Fig. 3 in Evolution of Polyscias sect. Tieghemopanax (Araliaceae) based on nuclear and chloroplast DNA sequence data
Fig. 3. — Strict consensus of 10,000 most parsimonious trees resulting from the analysis of 58 ITS sequences; tree length = 725 steps; consistency index = 0.518; retention index = 0.734. Clades denoted by brackets are those referred to in text. Values along branches are bootstrap percentages. Placement of Polyscias elegans (discussed in text) is denoted by an asterisk. Labels for the Tieghemopanax group and other clades in "Polyscias sensu lato" follow PLUNKETT et al. (2001).
Fig. 2 in Evolution of Polyscias sect. Tieghemopanax (Araliaceae) based on nuclear and chloroplast DNA sequence data
Fig. 2. — The single most parsimonious tree resulting from the combined analysis of ITS + trnL-trnF + 5S spacer sequences, based on the identical 24-taxon sampling as used in Fig. 1; tree length = 349 steps; consistency index = 0.663; retention index = 0.770. Values along nodes are bootstrap percentages; nodes with dashed branches have bootstraps below 70%. Identical or near identical clades (labeled A-E) from Fig. 1 are also labeled, as is the placement of Polyscias sambucifolia and P. microbotrys (asterisks), as discussed in text. Outgroups indicated by "OG."
Fig. 4 in Evolution of Polyscias sect. Tieghemopanax (Araliaceae) based on nuclear and chloroplast DNA sequence data
Fig. 4. — Strict consensus of 156 most parsimonious trees resulting from the analysis of 40 trnL-trnF sequences; tree length = 122 steps; consistency index = 0.938; retention index = 0.972. Values along branches are bootstrap percentages. Placement of Polyscias elegans (discussed in text) is denoted by an asterisk. Labels for the Tieghemopanax group and other clades in "Polyscias sensu lato" follow PLUNKETT et al. (2001).
Fig. 5 in Evolution of Polyscias sect. Tieghemopanax (Araliaceae) based on nuclear and chloroplast DNA sequence data
Fig. 5. — Strict consensus of 156 most parsimonious trees resulting from the analysis of 26 5S spacer sequences; tree length = 147 steps; consistency index = 0.744; retention index = 0.849. Values along branches are bootstrap percentages.
Figures 14–19 in Suspended mummies in Aleiodes species (Hymenoptera: Braconidae: Rogadinae) with descriptions of six new species from western Uganda based largely on DNA sequence data
Figures 14–19. Automontage photographs of features of the Aleiodes buzurae-group. (14) Aleiodes kasenenei sp. n., habitus; (15)–(19) Aleiodes kanyawarensis sp. n., habitus, face, mesosoma, wings and metasoma, respectively.
Figure 3 in Suspended mummies in Aleiodes species (Hymenoptera: Braconidae: Rogadinae) with descriptions of six new species from western Uganda based largely on DNA sequence data
Figure 3. Bootstrap consensus tree from analysis of CO1 sequence data for Aleiodes reared from suspended mummies in Uganda plus another member of the A. buzurae-group and outgroups.
Figures 20–25 in Suspended mummies in Aleiodes species (Hymenoptera: Braconidae: Rogadinae) with descriptions of six new species from western Uganda based largely on DNA sequence data
Figures 20–25. Automontage photographs of features of Aleiodes trevelyanae sp. n. (20)–(24) Habitus, face, metasoma, mesosoma and wings of holotype; (25) metasoma of paratype.
Figures 10–13 in Suspended mummies in Aleiodes species (Hymenoptera: Braconidae: Rogadinae) with descriptions of six new species from western Uganda based largely on DNA sequence data
Figures 10–13. Automontage photographs of features of Aleiodes busutai sp. n., habitus, head lateral aspect, metasoma and mesosoma, respectively.
Figure 2 in Suspended mummies in Aleiodes species (Hymenoptera: Braconidae: Rogadinae) with descriptions of six new species from western Uganda based largely on DNA sequence data
Figure 2. Phylogram from analysis of CO1 DNA sequence data for individuals of the A. buzurae-group and related species, and also multiple representatives of four European species for comparison.
Figure 1 in Suspended mummies in Aleiodes species (Hymenoptera: Braconidae: Rogadinae) with descriptions of six new species from western Uganda based largely on DNA sequence data
Figure 1. Photograph of a suspended mummy showing J-shaped configuration with silk thread (arrowed) arising near larval mouth.
Figure 4 in Suspended mummies in Aleiodes species (Hymenoptera: Braconidae: Rogadinae) with descriptions of six new species from western Uganda based largely on DNA sequence data
Figure 4. Selected contiguous fragment of the CO1 gene in individuals of the Aleiodes buzurae-group from Uganda and Kenya with bold characters indicating substitutions. Asterisks show phylogenetically informative substitutions at species level; exclamation marks show apomorphies for individual species in the buzarae group and $ sites that have both unique and informative variation.
Figs 27–31. Palaeoplatyura johnsoni Johannsen, 1910 in Macrocera rohaceki sp. nov. and other interesting records of Keroplatidae (Diptera) from southern and central Europe, with DNA sequence data
Figs 27–31. Palaeoplatyura johnsoni Johannsen, 1910, male: 27 – wing; 28 – terminalia, ventral view; 29 – terminalia, dorsal view, tergite 9 removed; 30 – tergite 9 and cerci, external view; 31 – habitus.
Figs 11–16 in Macrocera rohaceki sp. nov. and other interesting records of Keroplatidae (Diptera) from southern and central Europe, with DNA sequence data
Figs 11–16. Isoneuromyia pseudochracea (Landrock, 1925), male: 11 – wing; 12 – thorax dorsally; 13 – habitus; 14 – terminalia, ventral view; 15 – terminalia, dorsal view, tergite 9 removed; 16 – tergite 9 and cerci, external view.
Fig. 26 in Macrocera rohaceki sp. nov. and other interesting records of Keroplatidae (Diptera) from southern and central Europe, with DNA sequence data
Fig. 26. Phylogenetic tree based on 3 mitochondrial gene markers (12S, COI, cytb) outlining relationships among all three European species of Isoneuromyia Brunetti, 1912.
Figs 1–4 in Macrocera rohaceki sp. nov. and other interesting records of Keroplatidae (Diptera) from southern and central Europe, with DNA sequence data
Figs 1–4. Macrocera rohaceki sp. nov., male: 1 – wing; 2 – terminalia, ventral view; 3 – terminalia, dorsal view, tergite 9 removed; 4 – tergite 9 and cerci, external view. Scale bars = 0.1 mm.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.