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Fig. 7 in A revision of the Thyropygus allevatus group. Part V: Nine new species of the extended opinatus subgroup, based on morphological and DNA sequence data (Diplopoda: Spirostreptida: Harpagophoridae)
Fig. 7. Thyropygus planispina sp. nov., from Tham Sua temple, holotype (CUMZ-D00088), ♂, gonopods. A. Anterior view, left telopodite removed. B. Posterior view, left telopodite removed. C. Lateral view. D. Left telopodite, posterior-mesal view. E. Left telopodite, anterior-lateral view.
Fig. 6 in A revision of the Thyropygus allevatus group. Part V: Nine new species of the extended opinatus subgroup, based on morphological and DNA sequence data (Diplopoda: Spirostreptida: Harpagophoridae)
Fig. 6. Thyropygus navychula sp. nov., from Surin Islands, holotype (CUMZ-D00095), ♂, gonopods. A. Anterior view, left telopodite removed. B. Posterior view, left telopodite removed. C. Left telopodite, posterior-mesal view. D. Left telopodite, anterior-lateral view.
Fig. 4 in A revision of the Thyropygus allevatus group. Part V: Nine new species of the extended opinatus subgroup, based on morphological and DNA sequence data (Diplopoda: Spirostreptida: Harpagophoridae)
Fig. 4. Thyropygus forceps sp. nov., gonopods. – A, C–E. Holotype (CUMZ-D00092), ♂, from Namwang Srithammasokrach. A. Anterior view, left telopodite removed. C. Posterior view, left telopodite removed. D. Left telopodite, posterior-mesal view. E. Left telopodite, anterior-lateral view. – B. Specimen from Tham Pha Deang temple (CUMZ-D00093), ♂. Anterior view, left telopodite removed.
Fig. 10 in A revision of the Thyropygus allevatus group. Part V: Nine new species of the extended opinatus subgroup, based on morphological and DNA sequence data (Diplopoda: Spirostreptida: Harpagophoridae)
Fig. 10. Thyropygus ursus sp. nov., from Lanta Islands, holotype (NMHW-Inv.7855), ♂, gonopods. A. Anterior view, left telopodite removed. B. Posterior view, left telopodite removed. C. Left telopodite, posterior-mesal view. D. Left telopodite, anterior-lateral view.
Fig. 9 in A revision of the Thyropygus allevatus group. Part V: Nine new species of the extended opinatus subgroup, based on morphological and DNA sequence data (Diplopoda: Spirostreptida: Harpagophoridae)
Fig. 9. Thyropygus undulatus sp. nov., from Khao Phanom Bencha, holotype (CUMZ-D00087), ♂, gonopods. A. Anterior view, left telopodite removed. B. Posterior view, left telopodite removed. C. Lateral view. D. Left telopodite, posterior-mesal view. E. Left telopodite, anterior-lateral view.
Fig. 3 in A revision of the Thyropygus allevatus group. Part V: Nine new species of the extended opinatus subgroup, based on morphological and DNA sequence data (Diplopoda: Spirostreptida: Harpagophoridae)
Fig. 3. Thyropygus culter sp. nov., from Rorn waterfall, holotype (CUMZ-D00091), ♂, gonopods. A. Anterior view, left telopodite removed. B. Posterior view, left telopodite removed. C. Left telopodite, posterior-mesal view. D. Left telopodite, anterior-lateral view.
CyclomicsSeq: Accurate detection of circulating tumor DNA using nanopore consensus sequencing
<p>CyclomicsSeq is a protocol designed to produce and sequence long DNA concatemers with a linear repetition to acquire high accuracy consensus reads. In this dataset, we used CyclomicsSeq for sequencing TP53 in cell-free DNA of healthy individuals and of head and neck cancer patients and for sequencing synthetic TP53 DNA sequences that mimic the length of cell-free DNA. This dataset contains data (mainly base calls of the backbone and the insert) of 32 nanopore sequencing runs. <br> </p>
Fig. 55. One ofthreetreesfromtotalevidenceanalysiswith POYof 92-taxondatasetusing 2 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Fig. 55. One ofthreetreesfromtotalevidenceanalysiswith POYof 92-taxondatasetusing 2: 2 indel ⁄ transition–transversioncostratio, whichhad the lowest MRI value. Bremer support values are shown.
Fig. 53 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Fig. 53. One of six trees from total evidence analysis with POY of 92-taxon data set using 1: 1 indel ⁄ transition–transversion cost ratio. (d) Non-homoplasious; (s) homoplasious.
Figs 45–48. 45. Oneoftwotreesderivedfromanalysisofcombinedmoleculardatawith 1 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Figs 45–48. 45. Oneoftwotreesderivedfromanalysisofcombinedmoleculardatawith 1: 1 indel ⁄ transition–transversioncostratio. 46. Singletree derivedfromanalysisofcombinedmoleculardatawith 2: 2 indel ⁄ transition–transversioncostratio. 47. Singletreederivedfromanalysisof ~500 bp of 16S rRNAdatausing 1: 1 indel ⁄ transition–transversioncost ratio. 48. Singletreederivedfromanalysis of ~1800 bpof 18S rRNAusing 1: 1 indel ⁄ transition–transversioncostratio.
Fig. 43 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Fig. 43. Strict consensus of three trees derived from successive weighting of the results shown in Fig. 42. (d) Non-homoplasious; (s) homoplasious.
Figs 16–24. 16 in Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Figs 16–24. 16. Saileriola sandakanensis (Saileriolidae). Coxae of middle and hind legs more distant from each other. 17a. Cydnus aterrimus (Cydnidae): hind tibiae, posterior view; 17b. Dallasiellus dilatipes (Cydnidae): fore tibiae, anterior view. 18. Ruckesona vitrella (Saileriolidae). Abdominal trichobothria. 19. Serbana borneensis (Phloeidae). Abdominal trichobothria. 20. Atarsocoris sp. (Cydnidae). Abdominal trichobothria. 21. Edessa sp. (Pentatomidae). Abdominal spiracles well removed from lateral margins of sternum. 22. Phloea subquadrata (Phloeidae). Male abdominal segment VIII with spiracles. 23. Tessaratoma papillosa (Tessaratomidae). Spiracles on second segment totally exposed and far removed from lateral margins of sternum. 24. Ruckesona vitrella (Saileriolidae), female. Sternite VII split on the midline.
Figure 1 in Evaluation of the taxonomy of Helix cincta (Muller, 1774) and Helix nucula (Mousson, 1854); insights using mitochondrial DNA sequence data
Figure 1. Map showing the localities of samples used in the present study representing the morphologically defined species and the distribution of Helix cincta (dash line, light grey) and Helix nucula (continuous line, dark grey).
Fig. 3 in Relationships Of The Heteronchocleidids (Heteronchocleidus, Eutrianchoratus And Trianchoratus) As Inferred From Ribosomal Dna Nucleotide Sequence Data
Fig. 3. Bayesian consensus tree for the anabantoids, channids and catfishes (silurids, bagrids, clariids) obtained using partial Cytochrome b sequences with cyprinids as outgroup. The heteronchocleidids genera present on the anabantoids and channids are shown with their geographical areas. Values shown at each node refer to Bayesian posterior probabilities. (*refer to Table 3 for names used in GenBank).
Fig. 2. Bayesian consensus tree generated from partial 28S in Relationships Of The Heteronchocleidids (Heteronchocleidus, Eutrianchoratus And Trianchoratus) As Inferred From Ribosomal Dna Nucleotide Sequence Data
Fig. 2. Bayesian consensus tree generated from partial 28S rDNA sequences (D1 domain) with Diplectanum spp. and Gyrodactylus spp. as outgroups. Values shown at each node refer to Bayesian (BI) posterior probabilities/maximum likelihood (ML) percentages of the bootstrap values with 100 replicates. Bootstrap values lower than 50 are given as dashes (-).
Fig. 1 in Relationships Of The Heteronchocleidids (Heteronchocleidus, Eutrianchoratus And Trianchoratus) As Inferred From Ribosomal Dna Nucleotide Sequence Data
Fig. 1. Neighbour joining (NJ) tree constructed by PAUP* using partial 28S rDNA sequences (D1 domain) with Diplectanum spp. and Gyrodactylus spp. as outgroups. Percentages of the bootstrap values for neighbour joining (NJ)/maximum parsimony (MP) (NJ & MP=1,000 replicates) are shown along the branches. Bootstrap values lower than 50 are given as dashes (-).
Data from: A cost-effective blood DNA methylation-based age estimation method in domestic cats, Tsushima leopard cats (Prionailurus bengalensis euptilurus), and Panthera species, using targeted bisulfite sequencing and machine learning models
<p><span>Knowledge of individual age can help both in-situ and ex-situ conservation programs to design more efficient and suitable management plans for targeted wildlife species. DNA methylation is one of the epigenetic aging markers that has emerged as a promising tool that can estimate age with high accuracy using only a tiny amount of biological material, which can be collected in a minimally invasive way. Here, we sequenced five targeted genetic regions and used </span><span>8–23</span><span> selected CpG sites to build age estimation models with machine learning methods </span><span>with about only $3–7 per sample</span><span>, using blood samples of seven Felidae species—ranging from small to big, and domestic to endangered species: domestic cats (<em>Felis catus</em>, 139 samples), Tsushima leopard cats (<em>Prionailurus bengalensis euptilurus</em>, 84 samples), and five<em> Panthera </em>species (96 samples). </span><span>The models built achieved satisfactory accuracy—the mean absolute error of the best models was 1.966, 1.348, and 1.552 years in domestic cats, Tsushima leopard cats, and <em>Panthera</em> spp., respectively.</span><span> Our models in domestic cats and Tsushima leopard cats were applicable to individuals regardless of health conditions, indicating the high applicability of our models to samples collected from diverse situations, e.g., rescued individuals in the context of conservation. We also showed the possibility of developing universal age estimation models for the five<em> Panthera</em> spp. using two of the five genetic regions, suggesting an even lower cost to use our models for future applications.</span></p>
Figures 42–46 in DNA sequencing reveals three new species of Chamberlainium (Corallinales, Rhodophyta) from South Africa, all formerly passing under Spongites yendoi
Figures 42–46: Chamberlainium occidentale tetrasporangial anatomy. (42) Vertical section through the outer thallus showing an early stage tetrasporangial conceptacle primordium with peripheral roof development (black arrowheads) and a protective layer of epithallial cells (e) (L 3986120). Scale bar = 50 μm. (43) Vertical section through the outer thallus showing a later stage tetrasporangial conceptacle primordium with peripheral roof development (black arrowheads) and tetrasporangial (t) initials arranged peripherally around a central columella (c). Note the persisting layer of protective epithallial cells (e) (UWC 93/220). Scale bar = 50 μm. (44) Vertical section through the outer thallus showing a maturing tetrasporangial conceptacle with peripheral roof development (black arrowheads) and tetrasporangial (t) initials, peripherally arranged around a central columella (c). Note the layer of protective epithallial cells (e) (UWC 93/220). Scale bar = 50 μm. (45) Vertical section through a mature, raised tetrasporangial conceptacle showing tetrasporangia (t) with stalk cells (white arrowheads), peripherally arranged around a well-defined central columella (C). Note, the sunken and unoccluded pore opening (white arrow) (UWC 93/220). Scale bar = 100 μm. (46) Magnified view of the pore canal of a mature tetrasporangial conceptacle showing terminal, elongate initials (black arrows) that project into the pore canal as papillae and the base of the pore canal sunken (black arrowheads) into the chamber with terminal, elongate initials near the base pointing downward. Note, the sunken and unoccluded pore opening (white arrow) (UWC 93/220). Scale bar = 20 μm.
Figures 36–41 in DNA sequencing reveals three new species of Chamberlainium (Corallinales, Rhodophyta) from South Africa, all formerly passing under Spongites yendoi
Figures 36–41: Chamberlainium occidentale gametangial anatomy. (36) Vertical section through the outer thallus showing a spermatangial conceptacle primordium with peripheral roof development (black arrows) and simple spermatangial systems (black arrowheads) confined to the conceptacle floor. Note the protective layer of epithallial cells (white arrow) (L 3986120). Scale bar = 50 μm. (37) Vertical section through a mature, raised spermatangial conceptacle showing the mucilage plug (white arrowhead) that occludes the pore opening and simple, spermatangial systems (black arrowheads) confined to the conceptacle floor (UWC 15/56). Scale bar = 50 μm. (38) Magnified view through a mature spermatangial conceptacle showing the pore canal lined with terminal, elongate initials (black arrowheads) that project into the pore canal as papillae (UWC 15/56). Scale bar = 20 μm. (39) Magnified view of a mature carpogonial conceptacle with carpogonial branches comprising a single support cell (s), a hypogynous cell (h) with sterile cell (black arrowhead), and a carpogonium (c) extended into a trichogyne (black arrows) that may project out of the pore. Note that the pore canal is lined with terminal, elongate initials (white arrows) that project into the pore canal as papillae (L 3986120). Scale bar = 20 μm. (40) Vertical section through a mature carposporangial conceptacle showing a discontinuous central fusion cell (black arrowhead) with peripherally arranged gonimoblast filaments each terminating in a carposporangium (C) (L 3986120). Scale bar = 50 μm. (41) Magnified view of the floor of a carposporangial conceptacle showing a discontinuous central fusion cell (black arrowheads) bearing a peripherally arranged gonimoblast filament (1–6) terminating in a carposporangium (C). The remains of unfertilised carpogonial branches (black arrow) persist across the dorsal surface of the central fusion cell (L 3986120). Scale bar = 20 μm.
Figures 26–30 in DNA sequencing reveals three new species of Chamberlainium (Corallinales, Rhodophyta) from South Africa, all formerly passing under Spongites yendoi
Figures 26–30: Chamberlainium glebosum tetrasporangial anatomy. (26) Vertical section through the outer thallus showing an early stage tetrasporangial conceptacle primordium with peripherally arranged tetrasporangial initials (black arrowheads) and a protective layer of epithallial cells (black arrow) (UWC 15/17). Scale bar = 50 μm. (27) Vertical section through the outer thallus showing a later stage tetrasporangial conceptacle primordium with peripheral roof development (black arrowheads) with a developing central columella (white arrowhead). Note the persisting layer of protective epithallial cells (black arrow) (UWC 15/17). Scale bar = 50 μm. (28) Vertical section through a maturing tetrasporangial conceptacle showing tetrasporangial initials (t) arranged peripherally around a central columella (between white arrowheads). Note the layer of protective epithallial cells (black arrow) being shed (L 3986123). Scale bar = 50 μm. (29) Vertical section through a mature, raised tetrasporangial conceptacle showing tetrasporangia (t) with stalk cells (white arrowheads), peripherally arranged around a well-defined central columella (C). Note the base of the pore canal sunken into the chamber with terminal, elongate initials near the base pointing downward (black arrowheads) (UWC 15/55). Scale bar = 100 μm. (30) Magnified view of the pore canal of a mature tetrasporangial conceptacle showing terminal, elongate initials (black arrows) that project into the pore canal as papillae and the base of the pore canal sunken (black arrowheads) into the chamber with terminal, elongate initials near the base pointing downward (UWC 15/55). Scale bar = 20 μm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.