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342 results for “Electron Microscopy”
Figs 11–22 in Palp sensory structures in adult caddisflies of the suborder Annulipalpia (Trichoptera): a scanning electron microscopy study
Figs 11–22. Palp sensilla of caddisflies of the suborder Annulipalpia: 11 – N. bimaculata female, long trichoid sensilla on lateral surface of the fifth maxillary palp segment; 12 – N. bimaculata female, short chaetoid sensillum on ventral surface of the fourth maxillary palp segment; 13 – Ch. marginata male, a group of long chaetoid sensilla on medial surface of the second maxillary palp segment; 14 – D. varians male, truncated chaetoid sensillum on
Figs 7–10 in Palp sensory structures in adult caddisflies of the suborder Annulipalpia (Trichoptera): a scanning electron microscopy study
Figs 7–10. Labial palps of P. apicalis (7–8) and N. bimaculata (9–10) females. 7 – first and second segments; 8, 9 – third segment; 10 – sensory field on the third segment. Abbreviations: chs-s – short chaetoid sensilla; lts – long trichoid sensilla; pes-f – flattened petaloid sensilla; sf – sensory field. Roman numerals represent segment numbers.
Figs 1–6 in Palp sensory structures in adult caddisflies of the suborder Annulipalpia (Trichoptera): a scanning electron microscopy study
Figs 1–6. Medial (1–5) and ventrolateral (6) surfaces of maxillary palp of D. robusta male (Hydropsychidae). 1 – first segment; 2 – second segment; 3 – third segment; 4 – sensory field of petaloid sensilla on the first segment; 5 – fourth segment; 6 – tip of the fifth segment. Abbreviations: cfs – campaniform sensilla; chs-l – long chaetoid sensilla; chs-s – short chaetoid sensilla; lts – long trichoid sensilla; pes-c – curved petaloid sensilla; sf – sensory field. Roman numerals represent segment numbers.
РИС. 4. Прикрепительный аппарат глохидиев Beringiana beringiana: A–C – внешний вид крючков; D – макрошипы. Масштабные линейки 10 мкм (A–C) и 5 мкм (D). СканируюЩаЯ ЭлектроннаЯ микроскопиЯ. FIG. 4. Hooks (A–C) and macrospines (D) of Beringiana beringiana glochidia. Scale bars 10 µm (A–C) и 5 µm (D). Scanning electron microscopy. in Первые данные о морфологии глохидиев двустворчатых моллюсков Beringiana beringiana (Bivalvia, Unionidae) оЗера Дальнее, Камчатка
РИС. 4. Прикрепительный аппарат глохидиев Beringiana beringiana: A–C – внешний вид крючков; D – макрошипы. Масштабные линейки 10 мкм (A–C) и 5 мкм (D). СканируюЩаЯ ЭлектроннаЯ микроскопиЯ. FIG. 4. Hooks (A–C) and macrospines (D) of Beringiana beringiana glochidia. Scale bars 10 µm (A–C) и 5 µm (D). Scanning electron microscopy.
РИС. 5. Поверхности створки глохидиЯ со скульптурой и порами: А – наруЖнаЯ; В –внутреннЯЯ. Масштабные линейки 10 мкм. СканируюЩаЯ ЭлектроннаЯ микроскопиЯ. FIG. 5. Valve surfaces with the sculpture and pores: A – exterior; B – interior. Scale bars 10 µm. Scanning electron microscopy. in Первые данные о морфологии глохидиев двустворчатых моллюсков Beringiana beringiana (Bivalvia, Unionidae) оЗера Дальнее, Камчатка
РИС. 5. Поверхности створки глохидиЯ со скульптурой и порами: А – наруЖнаЯ; В –внутреннЯЯ. Масштабные линейки 10 мкм. СканируюЩаЯ ЭлектроннаЯ микроскопиЯ. FIG. 5. Valve surfaces with the sculpture and pores: A – exterior; B – interior. Scale bars 10 µm. Scanning electron microscopy.
РИС. 3. Раковины Зрелых глохидиев Beringiana beringiana в раЗных ракурсах: А–С – Закрытые раковины, вид со стороны створки (А), вентрального угла (В) и лигамента (С); D–F – полностью открытые раковины, вид иЗнутри (D), снаруЖи (E) и боковых краев створок (F); G, H – приоткрытые раковины, стрелка укаЗывает на остатки волокон мускулаЗамыкателЯ. МасштабнаЯ линейка 100 мкм. СканируюЩаЯ ЭлектроннаЯ микроскопиЯ. FIG. 3. Mature glochidial shells of Beringiana beringiana from different angles of view: A–C – closed shells, view from the valve side (A), ventral angle (B), and ligament (C); D–F – open shells, interior view (D), exterior view (E), and from lateral margins of valves (F); G, H – ajar shells, the arrows indicate the remains of the adductor muscle fibers. Scale bar 100 µm. Scanning electron microscopy. in Первые данные о морфологии глохидиев двустворчатых моллюсков Beringiana beringiana (Bivalvia, Unionidae) оЗера Дальнее, Камчатка
РИС. 3. Раковины Зрелых глохидиев Beringiana beringiana в раЗных ракурсах: А–С – Закрытые раковины, вид со стороны створки (А), вентрального угла (В) и лигамента (С); D–F – полностью открытые раковины, вид иЗнутри (D), снаруЖи (E) и боковых краев створок (F); G, H – приоткрытые раковины, стрелка укаЗывает на остатки волокон мускулаЗамыкателЯ. МасштабнаЯ линейка 100 мкм. СканируюЩаЯ ЭлектроннаЯ микроскопиЯ. FIG. 3. Mature glochidial shells of Beringiana beringiana from different angles of view: A–C – closed shells, view from the valve side (A), ventral angle (B), and ligament (C); D–F – open shells, interior view (D), exterior view (E), and from lateral margins of valves (F); G, H – ajar shells, the arrows indicate the remains of the adductor muscle fibers. Scale bar 100 µm. Scanning electron microscopy.
Experimental data for: "Multi-slice electron ptychographic tomography for three-dimensional phase-contrast microscopy beyond the depth of field limits"
<p>This is the raw experimental data for the paper: "Multi-slice electron ptychographic tomography for three-dimensional phase-contrast microscopy beyond the depth of field limits"</p> <p>Now also including code to recreate figures, and data from alignment and multi-slice ptychography reconstructions.</p> <p>The data is in zarr format and can be read with the zarr python library. It also contains metadata in a dictionary. </p>
Gold Nanoparticles Synthesized in the Presence of Peptides - UV-Vis Spectra, Fluorescence, USAXS, Electron Microscopy
<p>Content Summary:</p> <ul> <li>Data from experiments in which gold nanoparticles were synthesized in the presence of peptides using a liquid-handling robot. Samples were analyzed using UV-Vis spectroscopy, fluorescence emission, USAXS, TEM, and SEM. </li> <li>Notebooks for loading and plotting data</li> <li>Code for synthesizing samples using an OT2 Opentrons liquid-handling robot.</li> </ul> <p>README:</p> <p><strong>/Data</strong></p> <p>Contains all UV-Vis, electron microscopy, fluorescence, and SAXS data for gold nanoparticles synthesized in the presence of peptides and HEPES.</p> <p><strong>/Data/2021_12_30_Prepared_UV_Vis_Data</strong></p> <p>The primary portion of the experimental dataset. UV-Vis spectroscopy data collected on a Biotek Epoch 2 microplate spectrophotometer 24 hours after samples were synthesized using a liquid handling robot (Opentrons OT2). The <strong>4x4x4_SI.csv </strong>file is the compilation of all sample information:</p> <ul> <li>Concentrations (M) of peptide, HAuCl4, and HEPES</li> <li>UID – unique ID based on date of synthesis, sample position, and peptide which was used to synthesize the sample.</li> <li>Peptide names: Z2: RMRMKMK; MZ2: myristoylated - RMRMKMK; MZ2R: myristoylated - KMKMRMR; PZ2: palmitoylated – RMRMKMK; Z2M6I: RMRMKIK; Z2M246I: RIRIKIK; AG3: AYSSGAPPMPPF.</li> </ul> <p>Each sample’s UID is a key to match with UV-Vis measurement result stored in the {<strong>UID}.txt </strong>files. Each of these files contains the wavelength, absorbance, and absorbance after subtraction of a water measurement.</p> <p><strong>/Data/2022_02_13_AuPeptide_Kinetics</strong></p> <p><strong>Measurement_Data.xlsx</strong> and <strong>Measurement_Times.xlsx </strong>contain UV-Vis spectra at several time points for each well measured, and the time corresponding to each time step, respectively. See <strong>/Notebooks/UV_Vis_Kinetics.ipynb</strong> for data plotting and sample concentration information.</p> <p><strong>/Data/ElectronMicroscopy</strong></p> <p>Scanning electron microscopy and transmission electron microscopy results of gold nanoparticles formed from the reduction of HAuCl4 in the presence or absence of different peptides.</p> <p>Fig A, B, C, D, E/F were prepared in the presence of Z2, Z2M6I, Z2M246I, no peptide, and MZ2R, respectively.</p> <p><strong>/Data/Fluorescence</strong></p> <p>Pyrene fluorescence data collected in the presence of different concentrations of lipidated peptides (MZ2, MZ2R, and PZ2) for estimation of the peptide critical micelle concentration.</p> <p><strong>/Data/SAXS</strong></p> <p>SAXS data of a high concentration of MZ2 which was fit using a cylindrical model form factor. The evaluated model is also shared in this directory.</p> <p><strong>/Data/USAXS</strong></p> <p>Similarly to the UV-Vis data directory, the <strong>USAXS_SI.csv</strong> file contains sample information for all of the USAXS measurements. The <strong>dsm_rg.csv</strong> file contains the output of AUTORG evaluated on the desmeared data after subtraction of a flat background at high-q. <strong>/DSM_Nexus, DSM_sub_AUTORG, </strong>and <strong>SMR_Nexus</strong> contain the desmeared, desmeared with background subtraction, and smeared versions of the USAXS data, respectively.</p> <p><strong>/Notebooks</strong></p> <p>Notebooks for plotting the shared data and estimating the CMC from the fluorescence data. See <strong>/Notebooks/environment.yml</strong> for packages necessary to execute the notebooks here and in <strong>/Synthesis_Protocol</strong>. We recommend installing this environment by using:</p> <p>conda env create -f /environment.yml</p> <p>Refer to <a href="https://github.com/SasView/sasmodels">https://github.com/SasView/sasmodels</a> and the first cell of <strong>/Notebooks/USAXS.ipynb</strong> for specific instructions on how to complete installation of the sasmodels module (sasmodels will be installed by Pip if you correctly use the shared environment.yml file).</p> <p><strong>/Figures</strong></p> <p>Figures generated from <strong>/Notebooks</strong>.</p> <p><strong>/Synthesis_Protocol</strong></p> <p>Please read the instructions within <strong>/Synthesis_Procol/Example.ipynb</strong>. In short, this folder contains the code used to synthesize the samples in this dataset using an OT2 Opentrons liquid handling robot.</p> <p> </p>
Text-fig. 7. Scanning electron micrographs (a, b, d, e, g–k), X-ray microtomographic orthoslices (c) and synchrotron radiation X-ray tomographic microscopy orthoslices (f) of fruits and endocarps of uncertain affinity from Zliv-Řídká Blana locality. a–c: Trebecenia sarcocalis, a – tricarpellate fruit, no. NM-F 3637, b – fruits supported by pentamerous and persistent calyx, no. NMF 3637, c – fruit almost circular in transverse section, no. NM-F 3637; d: Taxon 17, small fruit with slightly sunken stylar region, no. NM-F 3201; e: Taxon 19, spherical fruit, the fruit wall composed of large isodiametric, thick walled cells, no. NM-F 3181; f: Taxon 19, single-seeded fruit, no. NM-F 3621; g: Taxon 20, syncarpous, multicarpellate fruit of ten carpels, no. NM-F 3200; h: Taxon 22, syncarpous, multicarpellate fruit of seven carpels, no. NM-F 3159; i: cf. Sabia menispermoides, endocarp of drupaceous fruits, no. NM-F 4624; j: Taxon 25, endocarp triangular in cross-section, no. NM-F 3218; k: Taxon 24, endocarp spherical in cross-section with a distinctly ribbed and foveolate surface, no. NM-F 3217. in Plant Mesofossils From The Late Cretaceous Klikov Formation, The Czech Republic
Text-fig. 7. Scanning electron micrographs (a, b, d, e, g–k), X-ray microtomographic orthoslices (c) and synchrotron radiation X-ray tomographic microscopy orthoslices (f) of fruits and endocarps of uncertain affinity from Zliv-Řídká Blana locality. a–c: Trebecenia sarcocalis, a – tricarpellate fruit, no. NM-F 3637, b – fruits supported by pentamerous and persistent calyx, no. NMF 3637, c – fruit almost circular in transverse section, no. NM-F 3637; d: Taxon 17, small fruit with slightly sunken stylar region, no. NM-F 3201; e: Taxon 19, spherical fruit, the fruit wall composed of large isodiametric, thick walled cells, no. NM-F 3181; f: Taxon 19, single-seeded fruit, no. NM-F 3621; g: Taxon 20, syncarpous, multicarpellate fruit of ten carpels, no. NM-F 3200; h: Taxon 22, syncarpous, multicarpellate fruit of seven carpels, no. NM-F 3159; i: cf. Sabia menispermoides, endocarp of drupaceous fruits, no. NM-F 4624; j: Taxon 25, endocarp triangular in cross-section, no. NM-F 3218; k: Taxon 24, endocarp spherical in cross-section with a distinctly ribbed and foveolate surface, no. NM-F 3217.
Text-fig. 5. Mastixiopsis nyssoides KIRCHH. a, b, g–n: Organic preservation. a, b: Lignitic, unpermineralized, early Eocene Dorset Pipe clays at Arne, V. 40762. a: Ventral view (original illustration from pl. 18, fig. 1 of Chandler 1962). b: Transverse fracture, somewhat distorted by compression. c–f: Pyrite permineralization. c: Ventral view, V. 22963(1) from Sheppey, originally listed as Mastixia cantiensis. d: Lateral view, V. 22969 from Sheppey (identified as Mastixia grandis by Reid and Chandler 1933: pl. 25, fig. 8). e: Equatorial transverse physical section from (c). f: Equatorial transverse physical section from (d). g: Detail of pericarp from (e), showing endocarp formed of dense fibrous tissue, surrounded by mesocarp of anticlinally oriented larger cells. h: Detail of pericarp from (f). i–n: Type material from Eocene of Riestadt, Germany, MNB. i: Ventral view. j, k: Ventral and apical views of holotype. l: View of the transversely fractured surface from (j) showing horseshoe shaped locule. m: Equatorial transverse physical cut of the specimen in (i); note yellow resin cavity (arrow). n: Scanning electron microscopy of pericarp from (l) with locule lining at lower edge of image. Note dense endocarp tissue composed of small cells (fibres and sclereids), extending about 3/5 of distance to periphery, surrounded by mesocarp of larger, anticlinally oriented cells. Scale bars 1 cm in (a–f), (i–k), 1 mm in (g), 2 mm in (h), 3 mm in (l), m, 250 Μm in (n). Bar in (d) applies also to (c). Bar in (l) also applies to (m). Bar in (i) also applies to (j) and (k). in Mastixioid Fruits (Cornales) From The Early Eocene London Clay Flora: Morphology, Anatomy And Nomenclatural Revision
Text-fig. 5. Mastixiopsis nyssoides KIRCHH. a, b, g–n: Organic preservation. a, b: Lignitic, unpermineralized, early Eocene Dorset Pipe clays at Arne, V. 40762. a: Ventral view (original illustration from pl. 18, fig. 1 of Chandler 1962). b: Transverse fracture, somewhat distorted by compression. c–f: Pyrite permineralization. c: Ventral view, V. 22963(1) from Sheppey, originally listed as Mastixia cantiensis. d: Lateral view, V. 22969 from Sheppey (identified as Mastixia grandis by Reid and Chandler 1933: pl. 25, fig. 8). e: Equatorial transverse physical section from (c). f: Equatorial transverse physical section from (d). g: Detail of pericarp from (e), showing endocarp formed of dense fibrous tissue, surrounded by mesocarp of anticlinally oriented larger cells. h: Detail of pericarp from (f). i–n: Type material from Eocene of Riestadt, Germany, MNB. i: Ventral view. j, k: Ventral and apical views of holotype. l: View of the transversely fractured surface from (j) showing horseshoe shaped locule. m: Equatorial transverse physical cut of the specimen in (i); note yellow resin cavity (arrow). n: Scanning electron microscopy of pericarp from (l) with locule lining at lower edge of image. Note dense endocarp tissue composed of small cells (fibres and sclereids), extending about 3/5 of distance to periphery, surrounded by mesocarp of larger, anticlinally oriented cells. Scale bars 1 cm in (a–f), (i–k), 1 mm in (g), 2 mm in (h), 3 mm in (l), m, 250 Μm in (n). Bar in (d) applies also to (c). Bar in (l) also applies to (m). Bar in (i) also applies to (j) and (k).
Рис. 4. Микроскульптура наружной поверхности глохидиальных створок перловиц Nodularia biwae (A, D – увеличенный фрагмент) и Lanceolaria grayana (B, C – увеличенный фрагмент) иЗ Японии, о-в Хонсю. СканируюЩаЯ ЭлектроннаЯ микроскопиЯ. МасШтаб 1 мкм (А, В) и 2 мкм (C, D). Fig. 4. Microsculpture of external surface of glochidia of mussels Nodularia biwae (A, D – fragment) and Lanceolaria grayana (B, C – fragment) from Honshu Is., Japan. Scanning electron microscopy. Scale bar 1µm (А, В) and 2 µm (C, D). in Morphology of glochidia of the freshwater mussels Nodularia amurensis and Middendorffinaia sujfunensis (Bivalvia: Unionidae: Nodulariinae) from the Russian Far East
Рис. 4. Микроскульптура наружной поверхности глохидиальных створок перловиц Nodularia biwae (A, D – увеличенный фрагмент) и Lanceolaria grayana (B, C – увеличенный фрагмент) иЗ Японии, о-в Хонсю. СканируюЩаЯ ЭлектроннаЯ микроскопиЯ. МасШтаб 1 мкм (А, В) и 2 мкм (C, D). Fig. 4. Microsculpture of external surface of glochidia of mussels Nodularia biwae (A, D – fragment) and Lanceolaria grayana (B, C – fragment) from Honshu Is., Japan. Scanning electron microscopy. Scale bar 1µm (А, В) and 2 µm (C, D).
Nanoparticle Size Estimation by Scanning Transmission Electron Microscopy and Generative AI
<p>The "raw" directories contain unaltered simulated and experimental data. The train and val directories contain normalized data used to train the models of the manuscript. The dataframes directory contains all information about the atomic models. Exp info contains info about the raw experimental data (excluding the gas-cell data). </p>
Figures 25–28 in Complements to the morphology of Troglokhammouanus steineri Lourenço, 2007 (Scorpiones: Pseudochactidae) based on scanning electron microscopy
Figures 25–28: Chaerilus celebensis Pocock, female from Indonesia. 25. Left pecten, global view. 26. Microstructure of peg sensillae on teeth. 27–28. Peg sensillae in detail at different magnifications.
Figures 9–16 in Complements to the morphology of Troglokhammouanus steineri Lourenço, 2007 (Scorpiones: Pseudochactidae) based on scanning electron microscopy
Figures 9–16: Troglokhammouanus steineri Lourenço, male paratype. 9–10. Femur, dorsal aspect. 11. Chela hand, dorsoexternal aspect. 12. Fixed and movable fingers of chela, dorso-external aspect. 13. Patella, dorsal aspect. 14. Basitarsi and telotarsi of leg IV, showing spurs. 15. Telotarsi of leg IV with a pair of ventrosubmedian rows of spinules. 16. Tibial spur in detail.
Figures 1–8 in Complements to the morphology of Troglokhammouanus steineri Lourenço, 2007 (Scorpiones: Pseudochactidae) based on scanning electron microscopy
Figures 1–8: Troglokhammouanus steineri Lourenço, male paratype. 1. Carapace and chelicerae, dorsal aspect. 2. Carapace, lateral aspect, showing the small lateral ocelli (arrow). 3. Chelicera, dorsal aspect. 4. Sternum and genital operculum. 5. Sternites IV and V showing spiracles. 6. Spiracle in detail (arrow). 7–8. Metasomal segment V and telson, lateral and ventral aspects.
Figures 17–24 in Complements to the morphology of Troglokhammouanus steineri Lourenço, 2007 (Scorpiones: Pseudochactidae) based on scanning electron microscopy
Figures 17–24: Troglokhammouanus steineri Lourenço, male paratype. 17. Left pecten, global view. 18–19. Microstructure of peg sensillae on teeth. 20–24. Peg sensillae in detail at different magnifications.
◂Fig. 1 Morphology of thecate and coccoid cells, with labelled thecal plates. a–c, i, m Light microscopy, d–h, k–l scanning electron microscopy. a Ventral view of strain GeoM*788; b dorsal view of strain GeoM*793; c apical view of strain GeoK*044; d ventral view of strain GeoK*037; e dorsal view of strain GeoM*788; f apical view of strain GeoK*024, with the dehiscence of epithecal opening indicated by a blue line; g antapical view of strain GeoK*044; h leftlateral view of strain GeoM*866; i motile cell of strain GeoK*037; k–m coccoid cells showing variability in shape and size of strains k GeoM*866, l GeoM*793 and m GeoK*024. Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, Sa: anterior sulcal plate, Sd: right sulcal plate, Sp: posterior sulcal plate. Ss: left sulcal plate. Scale bar: 10 µm. UA: 15 kV in Morphological and molecular variability of Peridinium volzii Lemmerm. (Peridiniaceae, Dinophyceae) and its relevance for infraspecific taxonomy
◂Fig. 1 Morphology of thecate and coccoid cells, with labelled thecal plates. a–c, i, m Light microscopy, d–h, k–l scanning electron microscopy. a Ventral view of strain GeoM*788; b dorsal view of strain GeoM*793; c apical view of strain GeoK*044; d ventral view of strain GeoK*037; e dorsal view of strain GeoM*788; f apical view of strain GeoK*024, with the dehiscence of epithecal opening indicated by a blue line; g antapical view of strain GeoK*044; h leftlateral view of strain GeoM*866; i motile cell of strain GeoK*037; k–m coccoid cells showing variability in shape and size of strains k GeoM*866, l GeoM*793 and m GeoK*024. Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, Sa: anterior sulcal plate, Sd: right sulcal plate, Sp: posterior sulcal plate. Ss: left sulcal plate. Scale bar: 10 µm. UA: 15 kV
Electron microscopy images and morphometric data of SARS-CoV-2 variants in ultrathin plastic sections - Dataset 06 (SARS-CoV-2 Omicron B.1.1.529; BA.2)
<p>Dataset 06 comprises 164 transmission electron microscopy images of extracellular SARS-CoV-2 (isolate Omicron B.1.1.529; BA.2) particles in ultrathin plastic sections (45 nm) through Vero cell cultures. The images were recorded with dimensions of 4112 x 3008 pixels at a pixel size of 0.1641 nm and stored in 16-bit TIF format. It is recommended that an image viewer capable of reading 16-bit images, such as IrfanView, be used to visualize the images. The image files have been size calibrated and can be opened with the correct size calibration using ImageJ or Fiji with the Bioformats importer. A PDF document is provided with the image files, which describes the methods used for the generation of the images. Additionally, an XLSX file is included, offering morphometric particle measurements and the calculated statistical values for their distribution. The dataset was produced as dataset 06 for a comparative morphometric analysis of evolving SARS-CoV-2 variants. Further datasets used for the analysis are available in this repository (see dataset description document).</p>
Electron microscopy images and morphometric data of SARS-CoV-2 variants in ultrathin plastic sections - Dataset 04 (SARS-CoV-2 Beta B.1.351)
<p>Dataset 04 comprises 132 transmission electron microscopy images of extracellular SARS-CoV-2 (isolate Beta B.1.351) particles in ultrathin plastic sections (45 nm) through Vero cell cultures. The images were recorded with dimensions of 4112 x 3008 pixels at a pixel size of 0.1641 nm and stored in 16-bit TIF format. It is recommended that an image viewer capable of reading 16-bit images, such as IrfanView, be used to visualize the images. The image files have been size calibrated and can be opened with the correct size calibration using ImageJ or Fiji with the Bioformats importer. A PDF document is provided with the image files, which describes the methods used for the generation of the images. Additionally, an XLSX file is included, offering morphometric particle measurements and the calculated statistical values for their distribution. The dataset was produced as dataset 04 for a comparative morphometric analysis of evolving SARS-CoV-2 variants. Further datasets used for the analysis are available in this repository (see dataset description document).</p>
Electron microscopy images and morphometric data of SARS-CoV-2 variants in ultrathin plastic sections - Dataset 02 (SARS-CoV-2 Italy-INMI1)
<p>Dataset 02 comprises 154 transmission electron microscopy images of extracellular SARS-CoV-2 (isolate Italy-INMI1) particles in ultrathin plastic sections (45 nm) through Vero cell cultures. The images were recorded with dimensions of 4112 x 3008 pixels at a pixel size of 0.1641 nm and stored in 16-bit TIF format. It is recommended that an image viewer capable of reading 16-bit images, such as IrfanView, be used to visualize the images. The image files have been size calibrated and can be opened with the correct size calibration using ImageJ or Fiji with the Bioformats importer. A PDF document is provided with the image files, which describes the methods used for the generation of the images. Additionally, an XLSX file is included, offering morphometric particle measurements and the calculated statistical values for their distribution. The dataset was produced as dataset 02 for a comparative morphometric analysis of evolving SARS-CoV-2 variants. Further datasets used for the analysis are available in this repository (see dataset description document).</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.