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350 results for “Guiana Shield”

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zenodo40/100

FIG. 6. — Tovomita saulensis J in The maximum and the minimum: two new species of Tovomita Aubl. (Clusiaceae) from the Guiana Shield with an unusual number of stamens

FIG. 6. — Tovomita saulensis J.Engel & Molino, sp. nov.: A, male inflorescence; B, staminate floral bud dissected: androecium (top left), sepals (top right), petals (bottom); C, detail of pistillode (red circle) and stamens; D, detail of leaf venation; A, Mori et al. 24002; B, C, D, Phillippe et al. 26984. Photographs by Julien Engel. Scale bars: A, D, 5 mm; B, C, 1 mm.

opencc-by-4.0Jun 2022View details →
zenodo40/100

FIG. 2 in The maximum and the minimum: two new species of Tovomita Aubl. (Clusiaceae) from the Guiana Shield with an unusual number of stamens

FIG. 2. — Tovomita maxima Molino & J.Engel, sp. nov.: A, male inflorescence; B, fruit; C, open fruit showing four seeds (one seed missing); D, seeds (two with the red aril removed, one in longitudinal section); A, Sabatier & Fonty 5595; B-D, no voucher. A-D, Photographs by Daniel Sabatier.

opencc-by-4.0Jun 2022View details →
zenodo40/100

FIG. 3 in The maximum and the minimum: two new species of Tovomita Aubl. (Clusiaceae) from the Guiana Shield with an unusual number of stamens

FIG. 3. — Tovomita maxima Molino & J.Engel, sp. nov.: A, gynoecium; B, pistillate flower (perianth missing); C, outer sepals; D, staminate floral buds (note calyptrate bracteoles); E; two inner sepals (top left) and seven petals; F, androecium; C, E, F, from dissected staminate floral bud; A, B, Larpin 1057; C, E, F, Clarke 7145; D, Tostain et al. 2488. Photographs by Julien Engel. Scale bars: A-E, 5 mm; F, 2 mm.

opencc-by-4.0Jun 2022View details →
zenodo40/100

FIG. 4 in The maximum and the minimum: two new species of Tovomita Aubl. (Clusiaceae) from the Guiana Shield with an unusual number of stamens

FIG. 4. — Distribution of Tovomita maxima Molino & J.Engel, sp. nov. (·) and Tovomita saulensis J.Engel & Molino, sp. nov. (*).

opencc-by-4.0Jun 2022View details →
zenodo40/100

FIG. 5. — Tovomita saulensis J in The maximum and the minimum: two new species of Tovomita Aubl. (Clusiaceae) from the Guiana Shield with an unusual number of stamens

FIG. 5. — Tovomita saulensis J.Engel & Molino, sp. nov.: A, leaf adaxial surface (left), abaxial surface (right); B, stem with male inflorescence; C, part of male inflorescence; D, staminate floral bud; E, detail of stamens (left), detail of pistillode and stamens (right); F, immature fruits; G, transverse section of immature fruit apical rostrum (i.e., remaining styles and stigmas); H, sepals (from dissected bud); I, petals (from dissected bud); A, D, E, Phillippe et al. 26984; B, C, H, I, Mori et al. 24002; F, G, Mori & Pipoly 15551. Drawn by Laurence Ramon. Scale bars: A, B, F, 1 cm; C, 5 mm; D, E, G-I, 1 mm.

opencc-by-4.0Jun 2022View details →
zenodo40/100

FIG. 1 in The maximum and the minimum: two new species of Tovomita Aubl. (Clusiaceae) from the Guiana Shield with an unusual number of stamens

FIG. 1. — Tovomita maxima Molino & J.Engel, sp. nov.: A, stem with male inflorescence; B, part of male inflorescence; C, staminate flower; D, detail of stamens; E, staminate floral bud longitudinal section (note the pistillode in the middle); F, pistillate flower (perianth missing); G, petals (from dissected bud); H, gynoecium (left), ovary transverse section (right); I, pistillate flower apical view; J, detail of staminodes; K; staminate floral bud (note calyptrate bracteoles); L, fruit medial section (left), fruit lateral view (right); A, B, Sabatier & Fonty 5595; C-E, K, Tostain et al. 2488; F, H-J, Larpin 1057; G, Sabatier & Molino 5153; L, Granville & Crozier 13646 (left), Henkel 4994 (right). Drawn by Laurence Ramon. Scale bars: A, B, I, 2 cm; C, 1 cm; D-I, K, 5 mm; J, 1 mm.

opencc-by-4.0Jun 2022View details →
zenodo40/100

Exon capture museomics deciphers the nine-banded armadillo species complex and identifies a new species endemic to the Guiana Shield

<h2><strong>Exon capture museomics deciphers the nine-banded armadillo species complex and identifies a new species endemic to the Guiana Shield</strong></h2> <p>Mathilde Barthe*, Lo&iuml;s Rancilhac, Maria C. Arteaga, Anderson Feij&oacute;, Marie-Ka Tilak, Fabienne Justy, W. J. Loughry, Colleen M. McDonough, Benoit de Thoisy, Fran&ccedil;ois Catzeflis, Guillaume Billet, Lionel Hautier, Benoit Nabholz, and Fr&eacute;d&eacute;ric Delsuc*</p> <p>*Corresponding authors: mathilde.barthe.pro@gmail.com; frederic.delsuc@umontpellier.fr</p> <p>&nbsp;</p> <h2><strong>Description of available files.&nbsp;</strong></h2> <p><strong>01_Figures_&amp;_tables_of_the_main_text.zip&nbsp;</strong><br>- &nbsp; &nbsp;Figure 1: Phylogenetic relationships reconstructed by maximum likelihood and maps representing the distribution of individuals according to their lineage.<br>- &nbsp; &nbsp;Figure 2: Assignment of individuals to lineages according to phylogenetic analyses, admixture analysis and phylogenetic delimitation.<br>- &nbsp; &nbsp;Figure 3: Principal Component Analysis of genetic variance.<br>- &nbsp; &nbsp;Figure 4: Distribution map and genetic composition of individuals of the four recognized species.</p> <p><strong>02_Supplementary_tables_&amp;_figures.zip&nbsp;</strong><br>- &nbsp; &nbsp;Figure S1: Distribution of targeted nuclear loci along a chromosome scale assembly.<br>- &nbsp; &nbsp;Figure S2: Mitochondrial genome depth of coverage.<br>- &nbsp; &nbsp;Figure S3: Calculation of mitochondrial lineage support for detecting contamination.<br>- &nbsp; &nbsp;Figure S4: Mitochondrial lineage support for each individual.&nbsp;<br>- &nbsp; &nbsp;Figure S5: a) Inbreeding coefficient and b) heterozygosity estimate for individuals according to cleaning steps.<br>- &nbsp; &nbsp;Figure S6: Percentage of missing data per captured locus.&nbsp;<br>- &nbsp; &nbsp;Figure S7: Summary information of the 837 cleaned nuclear loci (number of sequences, the proportion of variable sites and the percentage of missing data).&nbsp;<br>- &nbsp; &nbsp;Figure S8: &nbsp;Phylogenetic relationships of the 62 Dasypus individuals obtained using Astral on the 832 ML gene trees from the captured nuclear loci reconstructed with IQ-Tree and ModelFinder.<br>- &nbsp; &nbsp;Figure S9: Results of analyses to detect introgression.<br>- &nbsp; &nbsp;Figure S10: Cross validation errors according to the number of clusters (K) investigated.<br>- &nbsp; &nbsp;Figure S11: Detailed analysis of the substructure within the newly recognized D. novemcinctus (Southern lineage).<br>- &nbsp; &nbsp;Figure S12: Species delimitation estimated by bPTP-h.&nbsp;<br>- &nbsp; &nbsp;Figure S13: Comparison of the three best models from the model selection estimated with PHRAPL.<br>- &nbsp; &nbsp;Figure S14: Species delimitation estimated using GMYC.<br>- &nbsp; &nbsp;Figure S15: Heatmaps of pairwise genetic indexes between lineages.&nbsp;<br>- &nbsp; &nbsp;Figure S16: Effect of filters on admixture results.&nbsp;<br>- &nbsp; &nbsp;Figure S17: Updated map from Arteaga et al. (2020).&nbsp;<br>- &nbsp; &nbsp;Figure S18: Maximum likelihood phylogenetic tree of 212 pb of the 16s ribosomal RNA of five individuals analyzed in Abba et al., (2018) and three from this study.<br>- &nbsp; &nbsp;Table S1: List of biological samples with detailed information.<br>- &nbsp; &nbsp;Table S2a: Quality statistics by locus after filtering steps.<br>- &nbsp; &nbsp;Table S2b: Quality statistics by individuals after filtering steps.<br>- &nbsp; &nbsp;Table S3: Species delimitation estimated using PHRAPL for the four combinations.<br>- &nbsp; &nbsp;Table S4: Comparison of the lineage of the nineteen individuals in common with Arteaga et al. (2020) and our study.&nbsp;<br>- &nbsp; &nbsp;Table S5: Adult cranial measurements (in millimeters) of the four Dasypus species recognized in this study following Feij&oacute; &amp; Cordeiro-Estrela (2016).&nbsp;<br>- &nbsp; &nbsp;Table S6: Adult external measurements (in millimeters) of the four Dasypus species recognized in this study.&nbsp;</p> <p><br><strong>03_Mitogenomes.zip</strong><br>- &nbsp; &nbsp;Mitogenome_reference_Dasypus_novemcinctus.fasta: Mitogenome reference used to mapped reads and extract mitochondrial DNA.<br>- &nbsp; &nbsp;Concatenated_mitochondrial_genes.fasta: Concatenated nucleotide sequences of 15 mitochondrial genes (13 protein-coding + 2 rRNAs). Sites with more than 50% missing data were excluded resulting in a total of 13,924 sites. &nbsp;<br>- &nbsp; &nbsp;Concatenated_mitochondrial_genes_partition.txt: Partition file of concatenated sequences of the 15 mitochondrial genes (13 protein-coding + 2 rRNAs).&nbsp;<br>- &nbsp; &nbsp;Concatenated_mitochondrial_genes_TESTNEW.treefile : Maximum likelihood phylogenetic tree inferred from the concatenated sequences of the 15 mitochondrial genes using IQ-TREE under a partitioned model applying ModelFinder on each partition.<br>- &nbsp; &nbsp;Depth_coverage_mitogenomes.csv: Table of mean depth of coverage and proportion of missing data (Ns) of the 72 reconstructed mitochondrial genomes sequenced for this study.&nbsp;</p> <p><br><strong>04_Reanalyses.zip</strong><br>- &nbsp; &nbsp;Dloop_alignment.fasta: Alignment of the D-loop sequences obtained in this study with those from Arteaga et al. (2020).&nbsp;<br>- &nbsp; &nbsp;Dloop_alignment.treefile: Maximum likelihood phylogenetic tree inferred from the D-loop alignment using IQ-TREE (GTR+G model).<br>- &nbsp; &nbsp;Abba_shotgun.fasta: Alignment of the 16S rRNA of individuals from this study and those from Abba et al. (2018).<br>- &nbsp; &nbsp;Abba_shotgun.fasta.treefile: Maximum likelihood phylogenetic tree inferred from the 16S rRNA alignment using IQ-TREE (GTR+G model).</p> <p><br><strong>05_Contamination_exploration.zip</strong><br>- &nbsp; &nbsp;Mitochondrial_diagnostic_positions.csv: Table of the 350 diagnostic mitochondrial positions used to estimate proportion of reads supporting each lineage. Position number refers to the Complete_mitogenome_alignment.fasta file.<br>- &nbsp; &nbsp;Read_support_to_diagnostic_positions.csv: For each individual, this table reports the Diagnostic Rate (proportion of diagnostic positions per lineage supported by at least 3 reads), the Read Proportion (mean read proportion supporting diagnostic positions per lineage), Index (proportion of synapomorphies per lineage normalized by average frequency of reads supporting these synapomorphies) and the type of tissue (museum or fresh tissue).<br>- &nbsp; &nbsp;Contamination_exploration.R: R script used to plot read support to lineages and the effect of tissue type (fresh or museum).</p> <p>&nbsp;</p> <p><strong>06_Nuclear_dataset.zip</strong><br>- &nbsp; &nbsp;TATU_1000exons4baits.fasta: Reference sequences of 1,000 exons and flanking regions used to define the probes for exon capture extracted from the Dasypus novemcinctus genome.<br>- &nbsp; &nbsp;Dasypus_capture_Final_Baits_Set.fas: Sequences of the 16,146 probes used to capture the 997 nuclear loci (exons and flanking regions).<br>- &nbsp; &nbsp;Diploid_837_nuclear_loci.fasta: Diploid sequences of the 837 nuclear loci for the 62 individuals in PopPhyl format (Locus|lineage|individual|Allele).<br>- &nbsp; &nbsp;Mean_coverage_by_individuals.csv: Table of mean depth of coverage, horizontal coverage, and number of loci per individual after filtering.&nbsp;<br>- &nbsp; &nbsp;Mean_coverage_by_loci.csv: Table of mean depth of coverage, horizontal coverage and number of loci per loci after filtering.<br>- &nbsp; &nbsp;Location_loci_targeted.bed : list of the loci targeted by exon capture, with their genomic locations on the chromosome scale assembly of <em>Dasypus novemcinctus</em> (mDasNov1.hap2)</p> <p>&nbsp;</p> <p><strong>07_Disentangling_genotyping_errors.zip</strong><br>- &nbsp; &nbsp;Table_of_heterozygosity_and_inbreeging_coefficient.csv: Table of heterozygosity (He) and inbreeding coefficient (F) estimated for each cleaning steps: initial data, after correction of heterozygous positions (must be supported by a proportion of reads between 0.3 and 0.7), and after exclusion of 159 potentially paralogous loci.<br>- &nbsp; &nbsp;Plot_effect_of_cleaning_on_He&amp;F.R: R script used to plot the effect of cleaning steps on heterozygosity (He) and inbreeding coefficient (F).</p> <p>&nbsp;</p> <p><strong>08_Distribution_maps.zip&nbsp;</strong><br>- &nbsp; &nbsp;Coordinates_according_mito_nuclear_lineages.csv: Table of GPS coordinates of individuals according to their mitochondrial and nuclear lineages.<br>- &nbsp; &nbsp;Plot_mito_nuclear_distribution.R: R script used to plot individuals on the Neotropical map according to their mitochondrial and nuclear lineages in Figure 1.<br>- &nbsp; &nbsp;Mitochondrial_distribution.pdf: Geographical distribution of the 75 individuals according to their mitochondrial lineage.<br>- &nbsp; &nbsp;Nuclear_distribution.pdf: Geographical distribution of the 58 individuals according to their nuclear lineage.</p> <p>&nbsp;</p> <p><strong>09_Phylogenetic_inference.zip</strong><br>● &nbsp; &nbsp;Phylogram_Tree&nbsp;<br>- &nbsp; &nbsp;Concatenated_nuclear_loci.fasta: Concatenated sequences of the 837 nuclear loci &nbsp;representing a total of 506,355 sites.&nbsp;<br>- &nbsp; &nbsp;Concatenated_nuclear_loci_partition.txt: Partition file for the 837 nuclear loci concatenation.<br>- &nbsp; &nbsp;Concatenated_nuclear_loci_TESTNEW.treefile: Maximum likelihood phylogenetic tree inferred from the 837 nuclear loci concatenation using IQ-TREE under a partitioned model applying ModelFinder on each partition.</p> <p>● &nbsp; &nbsp;Ultrametric_Tree<br>- &nbsp; &nbsp;Ultrametric_tree_concatenated_nuclear_loci.treefile: Ultrametric tree inferred from the 837 nuclear loci concatenation (Concatenated_nuclear_loci.fasta in Phylogram_Tree folder) using a partitioned model applying ModelFinder on each partition (Concatenated_nuclear_loci_partition.txt in Phylogram_Tree folder). The ML phylogram (Concatenated_nuclear_loci_TESTNEW.treefile in Phylogram_Tree folder) was used as a guide tree. The root was dated at 6 Mya.</p> <p>● &nbsp; &nbsp;Gene_Tree&nbsp;<br>- &nbsp; &nbsp;Concatenate_gene_tree.treefile: File containing all gene trees reconstructed using IQ-TREE applying ModelFinder to each gene.<br>- &nbsp; &nbsp;Astral_consensus_tree.txt: Summary species tree reconstructed with Astral using Concatenate_gene_tree_TESTNEW.treefile</p> <p>● &nbsp; &nbsp;Introgression analyses:<br>- &nbsp; &nbsp;Concordance_factors_Dasypus.csv &nbsp;<br>- &nbsp; &nbsp;Topology_Weighting_Dasypus_plots.R<br>- &nbsp; &nbsp;SnaQ_results_hmax0.out &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;<br>- &nbsp; &nbsp;SnaQ_results_hmax1.out &nbsp;<br>- &nbsp; &nbsp;SnaQ_results_hmax2.out &nbsp; &nbsp; &nbsp;&nbsp;<br>- &nbsp; &nbsp;SnaQ_results_hmax3.out &nbsp; &nbsp;&nbsp;<br>- &nbsp; &nbsp;twisst_guianensis_spmap.txt &nbsp; &nbsp; &nbsp; &nbsp;<br>- &nbsp; &nbsp;twisst_guianensis_Weights<br>- &nbsp; &nbsp;twisst_mexico_spmap.txt<br>- &nbsp; &nbsp;twisst_mexico_Weights</p> <p>&nbsp;</p> <p><strong>10_Species_delimitation.zip</strong><br>● &nbsp; &nbsp;BPP&nbsp;<br>- &nbsp; &nbsp;input_for_bpp.phy: Sequence alignments of the 837 nuclear loci in phylip format.<br>- &nbsp; &nbsp;lineage_for_BPP: Correspondence file between individuals and lineages.<br>- &nbsp; &nbsp;r1 and r2: folders containing config files (bpp.ctl) and outputs of the BPP analysis.&nbsp;</p> <p>● &nbsp; &nbsp;bPTP&nbsp;<br>- &nbsp; &nbsp;PTPh_Support_Partition.txt: Details of the most supported species partition.&nbsp;<br>- &nbsp; &nbsp;PTPh_tree_partition.png: Tree illustrating the most supported species partition.&nbsp;</p> <p>● &nbsp; &nbsp;GMYC&nbsp;<br>- &nbsp; &nbsp;Script_GMYC.R: R script used to run the GMYC delimitation method on the ultrametric tree (11_Phylogenetic_inference/Ultrametric_Tree/Ultrametric_tree_concatenated_nuclear_loci.treefile).<br>- &nbsp; &nbsp;Figure_GMYC.png: Figure illustrating the results of the GMYC species delimitation analysis.</p> <p>● &nbsp; &nbsp;PHRAPL<br>- &nbsp; &nbsp;Script_PHRAPL.R: R script used to run the PHRAPL delimitation method on the 09_Phylogenetic_inference.zip/Gene_Tree /Concatenate_gene_tree.treefile</p> <p>&nbsp;</p> <p><strong>11_Population_genetic_analyses.zip</strong><br>● &nbsp; &nbsp;PCA<br>- &nbsp; &nbsp;Input_for_PCA.fasta: Diploid sequences of the 57 individuals (DNO-MC21 and DPI-L29 excluded) in PopPhyl format (Locus|species|individual|allele).<br>- &nbsp; &nbsp;PCA_Output: Output of the PopPhyl2PCA analysis using the Input_for_PCA.fasta file.<br>- &nbsp; &nbsp;Script_to_plot_PCA.R: R script used to plot PCA according to the mitochondrial lineage and nuclear composition (Admixture results).</p> <p>● &nbsp; &nbsp;ADMIXTURE<br>- &nbsp; &nbsp;lineage_for_Admixture.list: Correspondence between individuals and lineages file.<br>- &nbsp; &nbsp;Input_Admixture.*: 19,872 SNPs from nuclear data across the Dasypus complex.<br>- &nbsp; &nbsp;Output_Admixture.k.*: Output from the Admixture analysis according to K values (from 1 to 7).<br>- &nbsp; &nbsp;Output_Admixture.cv.error: Summary of the error value according to K.&nbsp;<br>- &nbsp; &nbsp;Plot_Admixture.R: R script used to plot Admixture results reordered by phylogeny.&nbsp;<br>- &nbsp; &nbsp;Plot_map_distribution_admixture.R: R script used to plot Admixture results on the Neotropical map.</p> <p>● &nbsp; &nbsp;Stats_Da_Dxy_GDI<br>- &nbsp; &nbsp;Pairwise_genetic_statistics.csv: Summary statistics computed using ABCstat_global.txt from the DILSmcsnp program for all pairwise combinations of individuals from the different lineages.&nbsp;<br>- &nbsp; &nbsp;Pairwise_GDI.csv: Genetic Differentiation Index estimates for all pairwise combinations of individuals from the different lineages.&nbsp;<br>- &nbsp; &nbsp;Plot_genetic_statistics.R: R script used to plot mean genetic statistics between lineages.</p> <p>● &nbsp; &nbsp;Sublineage_structure&nbsp;<br>○ &nbsp; &nbsp;ADMIXTURE<br>- &nbsp; &nbsp;Plot_map_distribution_sublineage_admixture.R: R script used to plot Admixture results on the Neotropical map.<br>○ &nbsp; &nbsp;PCA<br>- &nbsp; &nbsp;Input_for_PCA_southern_lineage.fasta: &nbsp;Diploid sequences of the 24 individuals of the Southern lineage in PopPhyl format (Locus|species|individual|allele).<br>- &nbsp; &nbsp;PCA_Output_southern_lineage: Output of the PopPhyl2PCA analysis using the Input_for_PCA_southern_lineage.fasta file.<br>- &nbsp; &nbsp;Script_to_plot_PCA_sublineage.R: R script to plot PCA according to the mitochondrial lineage and nuclear composition (Admixture results) focussing on individuals from the Southern lineage.</p> <p><br><strong>12_Morpho_molecular_distribution.zip</strong><br>- &nbsp; &nbsp;Coordinates_according_morphogroup_lineages.csv: GPS coordinates of individuals used in Hautier et al. (2017) according to their morphogroup.<br>- &nbsp; &nbsp;Plot_map_distribution_morpho_admixture.R: R script used to plot Admixture results and the individuals from Hautier et al. (2017) on the Neotropical map in Figure 5.<br>- &nbsp; &nbsp;Skull_lateral_*.png: Illustration of the lateral view of the skull of four individuals representing each species.<br>- &nbsp; &nbsp;Skull_sinuses_*.png: Illustration of the skull and paranasal sinuses of four individuals representing each species.</p> <p>&nbsp;</p>

opencc-by-4.0Jan 2024View details →
dryad40/100

Data from: Exon capture museomics deciphers the nine-banded armadillo species complex and identifies a new species endemic to the Guiana Shield

<p>The nine-banded armadillo (<em>Dasypus novemcinctus</em>) is the most widespread xenarthran species across the Americas. Recent studies have suggested it is composed of four morphologically and genetically distinct lineages of uncertain taxonomic status. To address this issue, we used a museomic approach to sequence 80 complete mitogenomes and capture 997 nuclear loci for 71 <em>Dasypus</em> individuals sampled across the entire distribution. We carefully cleaned up potential genotyping errors and cross contaminations that could blur species boundaries by mimicking gene flow. Our results unambiguously support four distinct lineages within the <em>D. novemcinctus</em> complex. We found cases of mito-nuclear phylogenetic discordance but only limited contemporary gene flow confined to the margins of the lineage distributions. All available evidence including the restricted gene flow, phylogenetic reconstructions based on both mitogenomes and nuclear loci, and phylogenetic delimitation methods consistently supported the four lineages within <em>D. novemcinctus</em> as four distinct species. Comparable genetic differentiation values to other recognized <em>Dasypus</em> species further reinforced their status as valid species. Considering congruent morphological results from previous studies, we provide an integrative taxonomic view to recognise four species within the <em>D. novemcinctus </em>complex: <em>D. novemcinctus</em>, <em>D. fenestratus</em>, <em>D. mexicanus</em>, and <em>D. guianensis </em>sp. nov.<em>, </em>a new species endemic of the Guiana Shield that we describe here. The two available individuals of <em>D. mazzai</em> and <em>D. sabanicola</em> were consistently nested within <em>D. novemcinctus </em>lineage and their status remains to be assessed. The present work offers a case study illustrating the power of museomics to reveal cryptic species diversity within a widely distributed and emblematic species of mammals.</p>

opencc-zeroJun 2024View details →
zenodo40/100

Fig. 1. Tometes camunani, MPEG 23447 in Tometes camunani (Characiformes: Serrasalmidae), a new species of phytophagous fish from the Guiana Shield, rio Trombetas basin, Brazil

Fig. 1. Tometes camunani, MPEG 23447, holotype, mature male, 224.3 mm SL; Brazil, Pará, Oriximiná, Trombetas basin, rio Erepecuru, upstream of Cachoeira do Chuvisco.

opencc-by-4.0Jun 2013View details →
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Fig. 3. Tometes camunani, INPA 3637 in Tometes camunani (Characiformes: Serrasalmidae), a new species of phytophagous fish from the Guiana Shield, rio Trombetas basin, Brazil

Fig. 3. Tometes camunani, INPA 3637, juvenile, 44.7 mm SL; Brazil, Pará, Oriximiná, rio Trombetas, Cachoeira Porteira.

opencc-by-4.0Jun 2013View details →
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Fig. 5 in Tometes camunani (Characiformes: Serrasalmidae), a new species of phytophagous fish from the Guiana Shield, rio Trombetas basin, Brazil

Fig. 5. Typical habitat of Tometes camunani, rapids and waterfalls in rio Trombetas basin, Pará, Brazil. Rocks are covered with Podostemaceae, rheophilic aquatic plants typical of the diet of species of Tometes (Photo by D. Bastos, 2008).

opencc-by-4.0Jun 2013View details →
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Fig. 2. Tometes camunani, MPEG 23448, 382 in Tometes camunani (Characiformes: Serrasalmidae), a new species of phytophagous fish from the Guiana Shield, rio Trombetas basin, Brazil

Fig. 2. Tometes camunani, MPEG 23448, 382 mm SL. a, lingual view of left dentary. b, lateral view of the neurocranium. c-e, ventral, labial and lingual views of the left premaxilla (1-5: teeth in labial row; 1'-2': teeth in lingual row). ap = ascending process of premaxilla; bas = basioccipital; fr = frontal; let = lateral ethmoid wing; lm = lamellae at symphysis; lp = lateral process of premaxilla; mt = mesethmoid; nc = neural complex; oph = orbitosphenoid; pa = parietal; pas = parasphenoid; pro = prootic; ptc = pterotic; su = supraoccipital; so = supraorbital; sph = sphenotic; sy = position of symphyseal tooth; tp = transversal process; tr = replacement teeth trenches. Scale bar: 10 mm.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Fig. 4 in Tometes camunani (Characiformes: Serrasalmidae), a new species of phytophagous fish from the Guiana Shield, rio Trombetas basin, Brazil

Fig. 4. Map of upper rio Trombetas basin and adjoining areas, showing the distribution of Tometes camunani. Star indicates type locality.

opencc-by-4.0Jun 2013View details →
zenodo40/100

Linked collectors and determiners for: New species of Leporinus (Characiformes: Anostomidae) from the highlands of the Guiana Shield in Venezuela.

Natural history specimen data linked to collectors and determiners held within, "New species of Leporinus (Characiformes: Anostomidae) from the highlands of the Guiana Shield in Venezuela". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/437cdaa8-9da8-4db4-8163-7d063db0be9e">https://bionomia.net/dataset/437cdaa8-9da8-4db4-8163-7d063db0be9e</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/437cdaa8-9da8-4db4-8163-7d063db0be9e">https://gbif.org/dataset/437cdaa8-9da8-4db4-8163-7d063db0be9e</a>. Formatted as a Frictionless Data package.

opencc-zeroJan 2024View details →
zenodo40/100

Linked collectors and determiners for: Review of Ancistrus (Siluriformes: Loricariidae) from the northwestern Guiana Shield, Orinoco Andes, and adjacent basins with description of six new species.

Natural history specimen data linked to collectors and determiners held within, "Review of Ancistrus (Siluriformes: Loricariidae) from the northwestern Guiana Shield, Orinoco Andes, and adjacent basins with description of six new species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/537cc788-42c7-46ad-86e1-74e539b0ce74">https://bionomia.net/dataset/537cc788-42c7-46ad-86e1-74e539b0ce74</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/537cc788-42c7-46ad-86e1-74e539b0ce74">https://gbif.org/dataset/537cc788-42c7-46ad-86e1-74e539b0ce74</a>. Formatted as a Frictionless Data package.

opencc-zeroJan 2024View details →
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Linked collectors and determiners for: New species and records of Chasmogenus Sharp, 1882 from the southwestern margin of the Guiana Shield (Coleoptera: Hydrophilidae: Acidocerinae).

Natural history specimen data linked to collectors and determiners held within, "New species and records of Chasmogenus Sharp, 1882 from the southwestern margin of the Guiana Shield (Coleoptera: Hydrophilidae: Acidocerinae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e80cf6ad-d7b3-48a3-9527-5c3e2c4cd83c">https://bionomia.net/dataset/e80cf6ad-d7b3-48a3-9527-5c3e2c4cd83c</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e80cf6ad-d7b3-48a3-9527-5c3e2c4cd83c">https://gbif.org/dataset/e80cf6ad-d7b3-48a3-9527-5c3e2c4cd83c</a>. Formatted as a Frictionless Data package.

opencc-zeroJan 2024View details →
zenodo40/100

Linked collectors and determiners for: Terminalia carinata Sabatier & J. Engel, sp. nov. (Combretaceae), a new large tree species from the Guiana shield revealed by re-examination of material previously identified as T. guyanensis Eichler.

Natural history specimen data linked to collectors and determiners held within, "Terminalia carinata Sabatier &amp; J. Engel, sp. nov. (Combretaceae), a new large tree species from the Guiana shield revealed by re-examination of material previously identified as T. guyanensis Eichler". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/9d5d9cb4-e64f-4402-981a-7844a361f562">https://bionomia.net/dataset/9d5d9cb4-e64f-4402-981a-7844a361f562</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/9d5d9cb4-e64f-4402-981a-7844a361f562">https://gbif.org/dataset/9d5d9cb4-e64f-4402-981a-7844a361f562</a>. Formatted as a Frictionless Data package.

opencc-zeroJan 2024View details →
zenodo40/100

Figs 16–19 in New species of diving beetles in the subgenus Platynectes s. str. from the Guiana Shield (Coleoptera: Dytiscidae: Agabinae)

Figs 16–19. Habitat of Platynectes species. 1 – Collecting Event AS-08-060b, Venezuela, Bolivar State: Rio Aponwao (P. garciai). 2 – Collecting Event SR10-0829-01A, Suriname, Sipaliwini District, along Sipaliwini River (P. decemnotatus). 3 – Collecting Event SR13-0819-05B, Suriname, Sipaliwini District, Tafelberg Tepui summit (P. decemnotatus, P. tafelbergensis). 4 – Collecting Event SR13-0819-02A, Suriname, Sipaliwini District, Tafelberg Tepui summit (P. tafelbergensis).

opencc-by-4.0Jul 2016View details →
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Figs 1–6 in New species of diving beetles in the subgenus Platynectes s. str. from the Guiana Shield (Coleoptera: Dytiscidae: Agabinae)

Figs 1–6. Dorsal habitus of Platynectes species. 1 – P. meru sp. nov. 2 – P. decemnotatus (Aubé, 1838). 3 – P. elaskanaima sp. nov. 4 – P. tafelbergensis sp. nov. 5 – P. submaculatus (Laporte, 1835). 6 – P. garciai sp. nov. Scale bar = 2 mm.

opencc-by-4.0Jul 2016View details →
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Figs 7–13 in New species of diving beetles in the subgenus Platynectes s. str. from the Guiana Shield (Coleoptera: Dytiscidae: Agabinae)

Figs 7–13. Median lobe of aedeagus of Platynectes species, top row left lateral view, bottom row right lateral view. 7 – P. submaculatus (Laporte, 1835). 8 – P. elaskanaima sp. nov. 9 – P. meru sp. nov. 10 – P. decemnotatus (Aubé, 1838). 11 – P. garciai sp. nov. 12 – P. tafelbergensis sp. nov. 13 – P. agallithoplotes sp. nov.

opencc-by-4.0Jul 2016View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record