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ShareScore release 0.9.0
Dataset results
46 results for “Microbial colonization”
Figure 1 from: Horváthová T, Babik W, Bauchinger U (2016) Biofilm feeding: Microbial colonization of food promotes the growth of a detritivorous arthropod. ZooKeys 577: 25-41. https://doi.org/10.3897/zookeys.577.6149
Figure 1 - The scheme of the experimental design (A). The three primary diets: an artificial diet (AD), an artificial diet with a single faecal pellet of conspecific (ADF), and a single ash leaf (L) were split into two treatments (2d and 8d). With respect to these two treatments the food was renewed every 2 days or every 8 days to obtain food either substantially overgrown by biofilm or with marginal biofilm growth. Individuals were weighed at the beginning and the end of experiment. After final weighing, individuals were killed and the hindgut was dissected for molecular analyses. Part B shows fresh pellets of artificial diet (pictures left), which were renewed either every 2 days or every 8 days (pictures right).
scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations
GEO Series GSE232107. Homo sapiens. 184 samples. Type: Expression profiling by high throughput sequencing.
Microbial RNAseq analysis of cecal and fecal samples collected from mice colonized with the microbiota of human twins discordant for obesity
GEO Series GSE48861. mouse gut metagenome. 59 samples. Type: Expression profiling by high throughput sequencing.
Microbial metabolite ammonia disrupts CEACAM1-TGF-β signaling to promote colon cancer
GEO Series GSE281613. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Determining effects of microbial metabolite, Urolithin A on colon epithelial cells
GEO Series GSE113581. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Code and Rdata for figures in Liu et al. Conserved genetic basis for microbial colonization of the gut. Cell 2025
Open the record for dataset details and reuse information.
Microbial Colonization Distribution and Adaptive Evolution of Lower Respiratory Tract in Bronchiectasis Patients.
ClinicalTrials.gov study NCT04966793. IPD Sharing: Not stated. Countries: 1. Publications: 0.
The Colonic Transit Time: a Modifiable Determinant of Intestinal Production and Uptake of Microbial Metabolites?
ClinicalTrials.gov study NCT01869751. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Microbial Colonization in Three Dimensional (3D) Printed Orthodontic Clear Aligners
ClinicalTrials.gov study NCT07143370. IPD Sharing: NO. Countries: 1. Publications: 0.
Microbial Biomarkers of EArly Pseudomonas Aeruginosa Colonization in CHildren With Cystic Fibrosis
ClinicalTrials.gov study NCT03947957. IPD Sharing: YES. Countries: 1. Publications: 0.
Ellagic Acid, Urolithin and Colonic Microbial Communities Affected by Walnut Consumption
ClinicalTrials.gov study NCT04066816. IPD Sharing: NO. Countries: 1. Publications: 0.
Specific Dietary Fibers May Enhance Colonic Adaptation in Short Bowel Syndrome Through Microbial and Metabolic Mechanisms That Drive Functional Compensation.
ClinicalTrials.gov study NCT07186608. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Microbial Colonization and Change of Chronic Keratinized Hand Eczema After Using Halometasone Triclosan
ClinicalTrials.gov study NCT03246776. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Microbial Epidemiology and Chlorhexidine Suscebtibily of Oropharyngeal and Intestinal Colonization
ClinicalTrials.gov study NCT02839980. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Microbial Epidemiology and Chlorhexidine Suscebtibily of Oropharyngeal and Intestinal Colonization
ClinicalTrials.gov study NCT02840656. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Comparison of Oral Care Solutions on Oral Microbial Colonization in Neurosurgical ICU Patients
ClinicalTrials.gov study NCT07365956. IPD Sharing: NO. Countries: 1. Publications: 0.
Effect of Crown Material on Gingival Microbial Colonization
ClinicalTrials.gov study NCT07083102. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Effect of Topical Active Oxygen Therapy on Surgical Site Wound Healing and Microbial Colonization
ClinicalTrials.gov study NCT06705920. IPD Sharing: YES. Countries: 1. Publications: 0.
Interleukin-4Ra Blockade by Dupilumab Decreases Staphylococcus Colonization and Increases Microbial Diversity in CRSwNP
ClinicalTrials.gov study NCT05094570. IPD Sharing: NO. Countries: 1. Publications: 0.
Rate of Microbial Colonization Over Native Calcified Cardiac Valves
ClinicalTrials.gov study NCT01409525. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.