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opencc-by-4.0May 2017View details →

Fig. 1 in Loss and Gain of Group I Introns in the Mitochondrial Gene of the Scleractinia (Cnidaria; Anthozoa).

Fig. 1. Secondary structures of representative cox1 introns in anthozoans. A: Corallimorpharian (Rhodactis howesii); B: basal and complex corals (Gardeneris hawaiinesis); C: robust corals (Diploastrea heliopora); D: actiniarian (Metridinium senile); E: poriferian (Plakortis angulospiculatus); F: zoantharian (Savalia savaglia). Features of the secondary structure indicate the characteristics of group I introns: 10 helical elements P1~P10; consensus primary structures P, Q, R, and S in hollow letters; internal guide sequence, IGS. Initial and terminal sites of the predicted open reading frame are labeled "ORF start" and "ORF stop", respectively.

Fig. 5 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence

Fig. 5. Distribution and frequency of Prosthenorchis elegans haplotypes (A–F) and haplogroups (I–II) by locality and individual. URRAS: Unidad de Rescate y Rehabilitacíon de Animales Silvestres, Universidad Nacional de Colombia; AMVA: Area Metropolitana del Valle de Aburŕa; WCS: Wildlife Conservation Society-Colombia.

Fig. 4 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence

Fig. 4. Phylogenetic tree obtained using Bayesian Inference (BI) and Maximum Likelihood (ML); node supports are provided for BI\ML. Outgroup taxa: Oncicola sp, AF417000; O. luehe = Oncicola luehe, JN710452; M. ingens = Macracanthorhynchus ingens, AF416997; M. hirudinaceus = Macracanthorhynchus hirudinaceus, FR856886; O. tortuous = Oligacanthorhynchus tortuous, AF416999.

Fig. 3 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence

Fig. 3. Haplotype network of Prosthenorchis elegans. Network shows relationships among P.elegans haplotypes (A–F) recovered from Saguinus leucopus and Cebus albifrons based on 633 bp of COI. All branches are of unit length (one mutational step). Labeled open circles represent observed haplotypes; areas of circles are proportional to the number observed for each haplotype. Filled circles indicate inferred haplotypes not found among sampled individuals. Double lines indicate variable sites (49, 274 and 293) resulting in changes in amino acid. Haplogroups are identified.

Fig. 2 in Mitochondrial DNA diversity in the acanthocephalan Prosthenorchis elegans in Colombia based on cytochrome c oxidase I (COI) gene sequence

Fig. 2. External morphology of Prosthenorchis elegans via scanning electron microscopy (SEM). A. View of entire body of parasite. B. Proboscis armed with hooks.

opencc-by-4.0May 2016View details →

Fig. 2 Maximum likelihood phylogenetic tree constructed using the mitochondrial cox1 gene for 103 in Genetic diversity and population genetics of large lungworms (Dictyocaulus, Nematoda) in wild deer in Hungary

ƒFig. 2 Maximum likelihood phylogenetic tree constructed using the mitochondrial cox1 gene for 103 Dictyocaulus lungworms originating from Hungary and five lungworms from GenBank indicated by their accession numbers (one dictyocaulid worm of red deer in New Zealand and four sequences of D. viviparus). Lungworms were collected from hunted deer (fallow, red and roe deer), indicated by triangle, square and circle, respectively. Geographical collecting regions are indicated for each sample

opencc-by-4.0May 2024View details →

Figure 3 in Analysis of mitochondrial cytochrome b gene sequences of marine leech, Pterobdella arugamensis

Figure 3. Haplotype network of P. arugamensis CYTB gene sequences. Different colours represent different locations. The circle size is proportional to the sample number. Each dash on the line symbolises one mutational event. Tiny white circle indicates median vector.

opencc-by-4.0May 2024View details →

Figure 2 in Analysis of mitochondrial cytochrome b gene sequences of marine leech, Pterobdella arugamensis

Figure 2. Representative maximum-likelihood tree showing nine haplotypes of P. arugamensis based on CYTB gene sequences. Ozobranchus jantseanus and Erpobdella japonica from the GenBank database were used as outgroups. The bootstrap percentages (1000 replicates) for maximum likelihood/maximum parsimony/neighbour joining trees are shown.

opencc-by-4.0May 2024View details →

Figure 1 in Analysis of mitochondrial cytochrome b gene sequences of marine leech, Pterobdella arugamensis

Figure 1. Locations of P. arugamensis used in this study. Sampling locations are shown by blue circles: Brunei (TP: Tanjong Pelumpong, PK: Pulau Kaingaran), Surabaya in Indonesia (EJ), and Lombok in Indonesia (EL). Red circle indicates the GenBank sample from Hainan, China. The map was adapted from the USGS National Map Viewer (open access) at http://viewer.nationalmap.gov/viewer/.

opencc-by-4.0Feb 2015View details →

Figure 2 in Investigation of genetic variation among Turkish populations of Andricus lignicola using mitochondrial cytochrome b gene sequence data

Figure 2. Bayesian analysis tree. Posterior probability values are given on the branches. Outgroup haplotypes: Ac (Andricus caliciformis) and Ak (Andricus kollari).

opencc-by-4.0Oct 2017View details →

Figure 1 in A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes

Figure 1. PCR images of eight Grapsoidea species. "1" is S. sinensis; "2" is C. sinensis; "3" is P. bidens; "4" is H. latimera; "5" is H. tientsinensis; "6" is H. wuana; "7" is H. sanguineus; "8" is V. litterata.

opencc-by-4.0Oct 2020View details →

Figure 1 in Evolutionary analyses of phylum Chaetognatha based on mitochondrial cytochrome oxidase I gene

Figure 1. The Bayesian tree based on the analysis of COI gene sequences. The confidence values are presented on the nodes.

opencc-by-4.0Oct 2020View details →

Figure 2 in Evolutionary analyses of phylum Chaetognatha based on mitochondrial cytochrome oxidase I gene

Figure 2. The maximum likelihood tree based on the analysis of COI gene sequences. The confidence values are presented on the nodes.

opencc-by-4.0Dec 2019View details →

Fig. 3 in Phylogenetic analysis of the Common Krait (Bungarus caeruleus) in Pakistan based on mitochondrial and nuclear protein coding genes

Fig. 3. Mitochondrial and nuclear genes (ND4, Cyt b, COI, 12S rRNA, 16S rRNA, C-mos, RAG-1, and NT3) Bayesian phylogeny for Common Krait (Bungarus caeruleus).

opencc-by-4.0Dec 2019View details →

Fig. 2 in Phylogenetic analysis of the Common Krait (Bungarus caeruleus) in Pakistan based on mitochondrial and nuclear protein coding genes

Fig. 2. Mitochondrial and nuclear genes (ND4, Cyt. b, COI, 12S rRNA, 16S rRNA, C-mos, RAG-1, NT3, and BDNF) based Maximum Likelihood phylogeny for Common Krait (Bungarus caeruleus).

Fig. 5 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 5. Phylogenetic tree Note: (A): Maximum likelihood (ML) phylogenetic tree inferred from the mitochondrial genome based on the 13 PCGs dataset; (B): Bayesian inference (BI) phylogenetic tree inferred from the mitochondrial genome based on the 13 PCGs dataset.

Fig. 4 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 4. Mitochondrial genome organization of Platygaster robiniae and 11 species of Platygastroidea, compared with the ancestral pancrustacean mt genome organization. Note: tRNA genes are indicated by single letter amino acid codes, L1, L2, S1 and S2 denote tRNALeu(CUN), tRNALeu(UUR), tRNASer(AGN) and tRNASer(UCN), respectively. Genes are transcribed from left to right except those indicated by underlining. Gene movements, relative to the ancestral organization, are indicated with arrows.

Fig. 2 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 2. Amino acids (A) and relative synonymous codons (B) of protein-coding genes of the mitochondrial genome of Platygaster robiniae.

Fig. 1 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 1. Genetic map of the complete mitochondrial genome of Platygaster robiniae. Notes: the blue arrow represents the direction of gene transcription; the black peak represents the deviation of GC%; the purple and green peaks represent the deviation in GC skew; green refers to positive skew, and purple indicates negative skew. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)