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Fig. 2 in Sequencing and analysis of the complete mitochondrial genome of the giant dobsonfly Acanthacorydalis orientalis (McLachlan) (Insecta: Megaloptera: Corydalidae)

Fig. 2. Inferred secondary structure of 22 tRNAs of the Acanthacorydalis orientalis mt genome. The tRNAs are labeled with the abbreviations of their corresponding amino acids. Dash (-) indicates Watson-Crick bonds and dot (·) indicates GU bonds.

Fig. 5 in Sequencing and analysis of the complete mitochondrial genome of the giant dobsonfly Acanthacorydalis orientalis (McLachlan) (Insecta: Megaloptera: Corydalidae)

Fig. 5. Phylogenetic relationships among the sequenced Megaloptera insects. Numbers at the nodes are Bayesian posterior probabilities (left) and ML bootstrap values (right).

Fig. 6 in Complete mitochondrial genome sequence of Bonasa sewerzowi (Galliformes: Phasianidae) and phylogenetic analysis

Fig. 6. The phylogenetic relationship of Bonasa among Galliformes based on the complete mitogenome. Branch lengths and topologies were obtained from Maximum Likelihood analyses. The numbers were the bootstrap values of MP/ML/BI trees in turn. * indicates that MP or BI tree was inconsistent with ML tree.

Fig. 4 in Complete mitochondrial genome sequence of Bonasa sewerzowi (Galliformes: Phasianidae) and phylogenetic analysis

Fig. 4. The structure of CR in Bonasa sewerzowi mitochondrial genome and comparasion with B. bonasia.

Fig. 5 in Complete mitochondrial genome sequence of Bonasa sewerzowi (Galliformes: Phasianidae) and phylogenetic analysis

Fig. 5. Nucleotide composition of different partitions from two Bonasa mitogenomes. AT-skew, (A-T)/(A+T); GC-skew, (G-C)/(G+C); PCG-1st, the first codon positions of PCGs; PCG-2nd, the second codon positions of PCGs; PCG-3rd, the third codon positions of PCGs.

Fig. 3 in Complete mitochondrial genome sequence of Bonasa sewerzowi (Galliformes: Phasianidae) and phylogenetic analysis

Fig. 3. The srRNA secondary structure of Bonasa sewerzowi mitogenome and comparasion with B. bonasia. The different nucleotides in B. bonasia was pointed out.

Fig. 1 in Complete mitochondrial genome sequence of Bonasa sewerzowi (Galliformes: Phasianidae) and phylogenetic analysis

Fig. 1. Gene map of the B. sewerzowi mitochondrial genome. Transfer RNA genes are designated by single-letter amino acid codes. L1, L2, S1, and S2 denote trnL (uur), trnL (cun), trnS (ucn) and trnS (agy), respectively.

Fig. 2 in Complete mitochondrial genome sequence of Bonasa sewerzowi (Galliformes: Phasianidae) and phylogenetic analysis

Fig. 2. The lrRNA secondary structure of Bonasa sewerzowi mitogenome and comparasion with B. bonasia. The different nucleotides in B.

Figure 4 in Complete mitochondrial genomes from museum specimens clarify millipede evolution in the Eastern Arc Mountains

Figure 4. Maximum likelihood-based phylogeny, with 100 bootstrap replicates and using all the 26 mitochondrial genomes generated in this study. The dataset was supplemented with Thyropygus sp. and Abacion magnum as outgroups, with sequences derived from GenBank. GenBank accession numbers are given in parentheses. Colours represent Tropostreptus sample origins. The upper right inset shows the topology of the Tropostreptus hamatus lineage, enlarged to clarify the branching order. Only support values <100 are shown. *Thyropygus sp. (red font) is very likely to be a species misidentification; for more information, see Discussion text.

Figure 5. Bayesian phylogeny, with species divergence age estimates reconstructed with BEAST using all the 26 in Complete mitochondrial genomes from museum specimens clarify millipede evolution in the Eastern Arc Mountains

Figure 5. Bayesian phylogeny, with species divergence age estimates reconstructed with BEAST using all the 26 mitochondrial genomes generated in this study. The dataset was supplemented with Thyropygus sp. and Abacion magnum as outgroups, derived from GenBank. GenBank accession numbers are provided in parentheses. Blue bars indicate the 95% highest probability density intervals for node ages. Age estimation for lineage divergence was based on a general arthropod mitochondrial DNA substitution rate and should be considered with caution. *Thyropygus sp. (red font) is very likely to be a misidentification; for more information, see the Discussion.

Figure 1 in Complete mitochondrial genomes from museum specimens clarify millipede evolution in the Eastern Arc Mountains

Figure 1. Typical Tropostreptus appearance exemplified by a Tropostreptus hamatus individual from Udzungwa Mountains, Tanzania (photograph credit: Nikolaj Scharff).

Figure 2 in Complete mitochondrial genomes from museum specimens clarify millipede evolution in the Eastern Arc Mountains

Figure 2. Map showing the origin of the millipede specimens used in the study, with the accuracy of location restricted to mountain blocks. Coloured circles all represent Tropostreptus species, whereas grey symbols represent species from other millipede genera. Base map published by permission of the Eastern Arc Mountains Conservation Endowment Fund.

Figure 3 in Complete mitochondrial genomes from museum specimens clarify millipede evolution in the Eastern Arc Mountains

Figure 3. The gene order of mitochondrial coding sequences shared among all analysed millipede species in this study, which include all known species of Tropostreptus (T. droides, T. hamatus, T. kipunji, T. microcephalus, T. severus and T. sigmatospinus), in addition to Archispirostreptus gigas, Chaleponcus netus, Macrolenostreptus orestes, Prionopetalum kraepelini and Pseudotibiozus cerasopus. Colour key: red, ribosomal RNA (rRNA); pink, transfer RNA (tRNA); yellow, protein-coding sequences (CDS). Arrows indicate gene transcription orientation.

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FIGURE 2 in Complete mitochondrial genome of four Scleromystax barbatus (Siluriformes: Callichthyidae) populations

FIGURE 2 | Phylogenetic analysis of 13 Corydoradinae and Hoplosternum littorale (Callichthyinae member) species as the outgroup based on the nucleotide sequences of 13 PCGs from the mitochondrial genome. Bootstrap values are shown next to nodes and the scale bar shows 0.03 changes. Population codes in Tab. 1.

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FIGURE 1 in Complete mitochondrial genome of four Scleromystax barbatus (Siluriformes: Callichthyidae) populations

FIGURE 1 | A. Geographic location of the Scleromystax barbatus populations in coastal Atlantic Rainforest rivers. B. Male of S. barbatus. Photo by Caio Feltrin. C. Complete mitochondrial genome of S. barbatus from the AR population. Population codes in Tab. 1.

Fig. 9 in Description of the female, nymph and larva and mitochondrial genome, and redescription of the male of Ixodes barkeri Barker, 2019 (Acari: Ixodidae), from the short-beaked echidna, Tachyglossus aculeatus, with a consideration of the most suitable subgenus for this tick

Fig. 9 Mitochondrial genomes of Ixodes (Endopalpiger) australiensis, I. (Endo.) barkeri, I. (Endo.) woyliei and I. (Exopalpiger) fecialis. Protein-coding genes are shown in green, tRNAs are in yellow, rRNAs are in red, and the two control regions are in blue. Protein-coding genes are labelled by their four-character abbreviations, tRNAs are labelled by their one-letter amino acid abbreviations, and the two control regions are labelled as CR1 and CR2. Mitochondrial genome size variation is indicated in parentheses. The arrangement of genes in these four species is identical except that the main cluster of tRNA genes has the arrangement ARNSEF in the three species of Endopalpiger [I. (Endo.) australiensis, I. (End.) barkeri and I. (End.) woyliei], whereas in the one species of Exopalpiger [I. (Exo.) fecialis] the arrangement is ARNESF. The arrangement in I. (Exo.) fecialis is the first known arrangement in an Ixodidae tick that is different from ARNSEF.Thus, ARNESF might be a synapomorphy for the subgenus Exopalpiger

Fig. 7 Ixodes barkeri Barker, 2019 in Description of the female, nymph and larva and mitochondrial genome, and redescription of the male of Ixodes barkeri Barker, 2019 (Acari: Ixodidae), from the short-beaked echidna, Tachyglossus aculeatus, with a consideration of the most suitable subgenus for this tick

Fig. 7 Ixodes barkeri Barker, 2019, scanning electron micrographs of larva. A Scutum. B Gnathosoma, dorsal view. C Gnathosoma, ventral view. D Gnathosoma, anteroventral view. E Coxae. Scale bars: A, E 0.1 mm; B–D, 0.05 mm

Fig. 1 in Description of the female, nymph and larva and mitochondrial genome, and redescription of the male of Ixodes barkeri Barker, 2019 (Acari: Ixodidae), from the short-beaked echidna, Tachyglossus aculeatus, with a consideration of the most suitable subgenus for this tick

Fig. 1 The four known localities in Australia, Queensland (Qld), of Ixodes barkeri Barker, 2019, are indicated by white-with-red dots

Fig. 10 in Description of the female, nymph and larva and mitochondrial genome, and redescription of the male of Ixodes barkeri Barker, 2019 (Acari: Ixodidae), from the short-beaked echidna, Tachyglossus aculeatus, with a consideration of the most suitable subgenus for this tick

Fig. 10 Maximum likelihood (ML) phylogenetic tree from entire mt genomes (14,935 bps). The sequence alignment was put though Gblocks to remove regions with alignment gaps.Tip labels indicate NCBI accession numbers and (Barker & Barker Collection reference nos.). Numbers above branches show maximum likelihood bootstrap support, whereas numbers below branches show the Bayesian posterior probability support. Ixodes pavlovskyi Pomerantzev, 1946, one of the species "Other Ixodes" (sensu Barker & Murrell, 2004), for which an entire mitochondrial (mt) genome was available in GenBank, was set as the outgroup. The scale bar indicates 0.06 nucleotide substitutions per nucleotide site for the 14,935 nucleotide sites in our alignment of theses entire mt genomes. So, for example, there were about 896 nucleotide substitutions along the branch that leads to I. (Ceratixodes) uriae plus I. (Sternalixodes) holocyclus plus I. (Exopalpiger) fecialis, which is marked with an asterisk [i.e. 0.06 nucleotide substitutions per nucleotide site × 14,935 nucleotide sites (bps) = 1896 nucleotide substitutions]. Ticks in bold were sequenced in the present study

Fig. 4 Ixodes barkeri Barker, 2019 in Description of the female, nymph and larva and mitochondrial genome, and redescription of the male of Ixodes barkeri Barker, 2019 (Acari: Ixodidae), from the short-beaked echidna, Tachyglossus aculeatus, with a consideration of the most suitable subgenus for this tick

Fig. 4 Ixodes barkeri Barker, 2019, scanning electron micrographs of female. A Idiosoma, dorsal view. B Scutum, dorsal view. C Scutum, dorsolateral view. D Idiosoma showing scutum and alloscutum with punctations and setae, dorsal centrolateral portion. E Idiosoma, ventral view. Scale bars: A, E 0.5 mm; B, C 0.2 mm; D 0.1 mm