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132 results for “Multi-gene”
FIGURES 2–5 in Review of Australian Scirtes Illiger, Ora Clark and Exochomoscirtes Pic (Coleoptera: Scirtidae) including descriptions of new species, new groups and a multi-gene molecular phylogeny of Australian and non-Australian species
FIGURES 2–5. Portion of female reproductive tract: a) bursa, b) prehensor, c) accessory gland, d) bursal sclerite. 2) Scirtes auratus; 3) S. kaytae; 4) S. tindaleensis; 5) S. emmaae.
Supplementary material 1 from: Ge Z-W, Jacobs A, Vellinga EC, Sysouphanthong P, van der Walt R, Lavorato C, An Y-F, Yang ZL (2018) A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification. MycoKeys 32: 65-90. https://doi.org/10.3897/mycokeys.32.23831
Figure S1. Maximum Likelihood tree showing the monophyly of Chlorophyllum inferred from the rpb2 data set : Explanation note: Bootstrap values (>50) are indicated along nodes. The clade where Chlorophyllum species are nested is highlighted in grey.
A complete time-calibrated multi-gene phylogeny of the European butterflies - data
<p>The datasets used for the article on phylogenetic relationships of European butterflies, including the treefile for all European species, as well as the posterior distributions of ages of each node.</p>
Fig. 8 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 8 Phylogenetic tree based on the 18S, 5.8S, and 28S rRNA genes, showing the systematic positions of Metaradiophrya speculorum sp. n. and Maupasella mucronata. The subclass Hymenostomatia was used to a posteriori root the tree. Bootstrap values for maximum likelihood conducted in IQTrees as well as posterior probabilities for Bayesian inferences conducted in Phycas and MrBayes were mapped onto the
Fig. 7 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 7 Phylogenetic tree based on the 18S rRNA gene and the ITS region, showing the systematic positions of Metaradiophrya speculorum sp. n. and Maupasella mucronata within the subclass Astomatia. The tree was a posteriori rooted according to Fig. 6. Bootstrap values for maximum likelihood conducted in IQTrees as well as posterior probabilities for Bayesian inferences conducted in Phycas and MrBayes were mapped
Fig. 5 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 5 Phylogenetic tree based on the 18S rRNA gene, showing the systematic positions of Metaradiophrya speculorum sp. n. and Maupasella mucronata within the class Oligohymenophorea. The subclass Peniculia was used to a posteriori root the tree. Bootstrap values for maximum likelihood conducted in IQTrees as well as posterior probabilities for Bayesian inferences conducted in Phycas and
Fig. 2 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 2 Metaradiophrya speculorum sp. n., holotype specimen in vivo. a Overview, showing the general body organization. Arrow marks the arched skeletal ridge; arrowheads denote the contractile vacuoles. b, d–f Details showing the ciliary pattern, the skeletal system, the nuclear apparatus, and the multiple contractile vacuoles (arrowheads). The skeletal system consists of a fibrillar hook and numerous fibers, which
Fig. 1 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 1 Metaradiophrya speculorum sp. n., holotype specimen in vivo. a, b Semi-schematic diagram of the ventral and the dorsal side, showing the ciliary pattern, the nuclear apparatus, as well as the skeletal system. c Ventral view, showing the general body organization. Arrow marks the arched skeletal ridge; arrowheads denote the contractile vacuoles. d Detail of the skeletal system, which consists of a fibrillar hook and
Fig. 6 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 6 Phylogenetic tree based on the 18S rRNA gene, showing the systematic positions of Metaradiophrya speculorum sp. n. and Maupasella mucronata isolated from endogeic lumbricid earthworms. The phylogenetic tree suggests that the evolution of endosymbiotic astome ciliates has proceeded through specialization to ecological groups of their host earthworms. Haptophrya planariarum and Dexiotricha spp. were used to a posteriori root the tree. Bootstrap
Fig. 4 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 4 Maupasella mucronata, Slovak specimens in vivo. a, b, g Overviews, showing the ciliary pattern, the skeletal system, and the nuclear apparatus. c Detail of the thorn and its supporting fibers. d The supporting fibers of the attachment apparatus of the opisthe are formed at the anterior end of the broken somatic ciliary rows. e Somatic kineties are narrowly arranged and composed of very densely spaced basal bodies. f
Fig. 3 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 3 Maupasella mucronata, Slovak specimens in vivo. a, d Semischematic diagrams of the ventral side, showing the ciliary pattern and the nuclear apparatus of representative specimens. b, c Ventral view, showing the ciliary pattern and the nuclear apparatus of a mid-divider. e, f Semi-schematic diagrams, showing the general body organization. Arrows mark the thorn, which consists of two skeletal fibers arranged in
Fig. 9 in Multi-gene phylogeny of the subclass Astomatia (Protista: Ciliophora) refreshed with two rare astome ciliates from the digestive tube of endogeic earthworms
Fig. 9 Putative secondary structure of ITS2 molecules of Metaradiophrya speculorum sp. n. and Maupasella mucronata as well as comparison of stems of helix III between Metaradiophrya speculorum and Metaradiophrya lumbrici
FIGURE 3 in Morphological and multi-gene phylogenetic analyses of two new species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southwestern China
FIGURE 3. Phyllosticta ovalina (IFRD 9478, holotype). a. Microfungi on leaf litter. b–c. Ascomata on leaf surface. d–e. Vertical section of ascomata. f–i. Asci. j–n. Ascospores (i in cotton blue). Scale bars: b = 500 μm, c = 100 μm, d = 50 μm, f–i = 20 μm, j–n = 10 μm.
FIGURE 1 in Morphological and multi-gene phylogenetic analyses of two new species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southwestern China
FIGURE 1. Phylogram of Phyllosticta resulting from a maximum likelihood analysis based on a combined matrix of ITS, LSU and TEF1 loci. The tree is artificially rooted to B. obtusa (CMW 8232). ML bootstrap values (left, ML-BS ≥ 50%) and Bayesian posterior probabilities (right, BYPP ≥ 0.9) are given at the nodes. New species of this study are indicated using red font and their associated support is bolded.
FIGURE 2 in Morphological and multi-gene phylogenetic analyses of two new species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southwestern China
FIGURE 2. Phyllosticta savannaensis (IFRD 9476, holotype). a. Microfungi on leaf litter. b–c. Ascomata on leaf surface. d–e. Vertical section of ascomata. f–i. Asci (i in cotton blue). j–n. Ascospores (m, n in cotton blue). Scale bars: b = 1000 μm, c= 500 μm, d = 100 μm, e, g–i = 30 μm, f = 50 μm, j–n = 10 μm.
FIGURE 2 in Multi-gene phylogeny of Pithomyces with the sexual morph of P. flavus Berk. & Broome
FIGURE 2. Pithomyces flavus (HCIO 51811, Epitype). a. Anamorph-teleomorph on substratum. b. Enlarged portion of P. flavus. c. Holotype of P. flavus. d. Conidia. e. Section of ascocarp. f. Asci. g. Ascospores. h. Culture on MEA. Scale bars: 10μm.
FIGURE 1 in Multi-gene phylogeny of Pithomyces with the sexual morph of P. flavus Berk. & Broome
FIGURE 1. Maximum likelihood (ML) tree inferred from ITS, SSU, LSU and RPB2 showing the relationship of Pithomyces flavus— Astrosphaeriella vesuvius, other species Astrosphaeriella and families in Pleosporales, Dothideomycetes. Bootstrap values are displayed at important nodes of the tree. Species described in the present paper are in red.
FIGURE 1 in South American Fomitiporia (Hymenochaetaceae, Basidiomycota) 'jump on' exotic living trees revealed by multi-gene phylogenetic analysis
FIGURE 1. One of the five 50% majority-rule consensus trees from Bayesian inference of combined ITS, nLSU and tef1-α sequences. BPP is shown above branches. Brown boxes shows two sister clades: Fomitiporia neotropica and Fomitiporia impercepta, clustered together (BPP=0.77). Exotic trees are noted in red and native trees in green. T=type, ARG=Argentina, GUF=French Guiana, BRA=Brasil.
FIGURE 2 in South American Fomitiporia (Hymenochaetaceae, Basidiomycota) 'jump on' exotic living trees revealed by multi-gene phylogenetic analysis
FIGURE 2. Fomitiporia impercepta (CORDC00005289): a. pore surface; b. tube layers. Fomitiporia neotropica (CORDC00005290): c. pore surface; d. tube layers.
FIGURE 1 in A new species of Coccomyces on Cunninghamia lanceolata and its phylogenetic placement based on multi-gene analysis
FIGURE 1. Phylogenetic tree generated from maximum parsimony analysis of the combined ITS rDNA, LSU rDNA and mtSSU rDNA sequences, using Lophodermium piceae and Lirula microspora as the outgroups. Bootstrap values of maximum parsimony more than 70% are shown above the respective branches. Bayesian posterior probabilities more than 0.95 are marked below the branches.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.