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SST forcing files and Model Builds for "Inter-basin versus intra-basin sea surface temperature forcing of the Western North Pacific subtropical high's westward extensions"
<p>This repository provides archives of the Community Earth System Model version 2.2.0 (CESM2.2.0) and case directories for the simulations used in the "Inter-basin versus intra-basin sea surface temperature forcing of the Western North Pacific subtropical high's westward extensions" manuscript. The repository includes:</p><ul><li>The original sea surface temperature forcing files used in each experiment (SST_Forcing Files) </li><li>The F2000CLIMO compset model builds forced for each experiment </li></ul>
Empirical data on growth and residency of juvenile Pacific salmon in North America estuaries
<p>Dataset compiling empirical data on estuarine growth and residency of Pacific salmon in North America. We conducted a systematic literature review to create this database, starting with a literature search in <i>Web of Science Core Collection</i> through Simon Fraser University's library proxy on April 24th, 2018, using the search parameters (salmon, Oncorhynchus) AND (estuary*) AND (residen* OR growth OR survival OR mortality), which returned 681 results (these results were presented in Arbeider 2018). We updated the search on March 29th, 2020, which produced 24 additional papers published after April 2018, and again on July 7th, 2022 which yielded another 31 papers published since March 2020. From these results, we extracted papers that research Pacific salmonids and whose study estuary was in North America. From this reduced list of papers, we extracted growth and residency parameters, as well as other relevant data. For complete methods please refer to:</p><p>Arbeider, M. et al. (In press). The estuarine growth and residency of juvenile Pacific salmon in North America: a compilation of empirical data. <i>Canadian Journal of Fisheries and Aquatic Sciences.</i></p>
Figure 3 in Crustaceans Associated with Cold Water Corals: A Comparison of the North Atlantic and North Pacific Octocoral Assemblages
Figure 3. Photos showing some of the amphipod species found associated with deep-sea gorgonians, of which many where undescribed species belonging to the pleustid group. (A, B) the undescribed pleustids, Chromopleustes sp. A_J2099 and sp. B_J2103 respectively; (C) Neopleustes sp. C_J2098, all associated with deep–sea gorgonians occurring below 1000 m depth (e.g., Acanthogorgia). (D) Neopleustes sp. D_J2103 occurred on octocorals of the family Plexauridae at 400 m. (E) Neupleustes eucanthoides Gurjanova, 1972 was also from an unidentified species of Acanthogorgia. (F) the extremely well armoured Uschakoviella echinophora belonging to the family Epimeriidae was observed associated with the coral Plumarella collected at 100 m.
Figure 2 in Crustaceans Associated with Cold Water Corals: A Comparison of the North Atlantic and North Pacific Octocoral Assemblages
Figure 2. ROV dive locations along the Aleutian Ridge, central Aleutian Islands, Alaska, during a cruise in 2004.
Figure 1 in Crustaceans Associated with Cold Water Corals: A Comparison of the North Atlantic and North Pacific Octocoral Assemblages
Figure 1. Remotely operated vehicle (ROV) dive locations in the New England and Corner Rise seamount groups, NW Atlantic, during cruises in 2003–2005.
Figure 2. – A in First record of Carolines parrotfish (Calotomus carolinus) and king angelfish (Holacanthus passer) around the Clipperton Atoll-La Passion Island (North-Eastern Tropical Pacific)
Figure 2. – A: Photograph of the female adult individual of Calotomus carolinus with a close up showing the details of the separated teeth (B), that are specific to this species (Photos E. Clua). C: Photograph of the juvenile individual of Holacanthus passer (Photo S. Planes) along with an adult individual (D) (Photo H. Debelius) in its natural environment, showing the specific vertical white stripe, which is present both in adult and juvenile individuals.
Figure 1. – A in First record of Carolines parrotfish (Calotomus carolinus) and king angelfish (Holacanthus passer) around the Clipperton Atoll-La Passion Island (North-Eastern Tropical Pacific)
Figure 1. – A: Clipperton-La Passion Island (France), Tropical Eastern Pacific Ocean. B: Approximative location of the sighting and capture of the adult female individual of Calotomus carolinus (X) and the sighting of the male individual (X') on the 11 and 13 August 2018, respectively. Approximative location of the sighting and capture of the juvenile individual of Holacanthus passer (Y) (maps modified from "Cartes de l'île de la Passion" by C. Jost, 2015).
Fig. 7 in Out of the Pacific: A second fossil porpoise from the Pliocene of the North Sea Basin
Fig. 7. Skull of the phocoenid cetacean Brabocetus gigaseorum gen. et sp. nov. from the Pliocene of northern Belgium IRSNB M. 2171 (holotype). Fragmentary basicranium in ventral view. Dotted lines indicate poorly visible sutures, the right tympanosquamosal recess, the groove for the mandibular nerve V3, and the presumed area of origin for scalenus medius.
Fig. 3 in Out of the Pacific: A second fossil porpoise from the Pliocene of the North Sea Basin
Fig. 3. Skull of the phocoenid cetacean Brabocetus gigaseorum gen. et sp. nov. from the Pliocene of northern Belgium IRSNB M. 2171 (holotype). A. Anterior view of the facial region. B. Posterior view. C. Ventral view of the right squamosal.
Fig. 2 in Out of the Pacific: A second fossil porpoise from the Pliocene of the North Sea Basin
Fig. 2. Skull of the phocoenid cetacean Brabocetus gigaseorum gen. et sp. nov. from the Pliocene of northern Belgium IRSNB M. 2171 (holotype) in dorsal view. Photo (A) and corresponding line drawing (B). Dotted lines indicate reconstructed parts and poorly visible structures. Dark grey surfaces indicate fracture surfaces. Light grey surface indicates the original position of the lost right nasal.
Fig. 5 in Out of the Pacific: A second fossil porpoise from the Pliocene of the North Sea Basin
Fig. 5. Skull of the phocoenid cetacean Brabocetus gigaseorum gen. et sp. nov. from the Pliocene of northern Belgium IRSNB M. 2171 (holotype). A. Right lateral view, photo (A1) and corresponding line drawing (A2). Dotted lines indicate the dorsal margin of the temporal fossa (A1), the reconstructed right postorbital process, and poorly visible sutures (A2). B. Left lateral view.
Fig. 4 in Out of the Pacific: A second fossil porpoise from the Pliocene of the North Sea Basin
Fig. 4. Anterior view of the facial region of the skull of the extant porpoise Phocoena phocoena (Linnaeus, 1758) with both nasals present (A) and right nasal removed (B), to show the corresponding fossae on the corresponding frontal and maxilla. Dotted lines indicate the outline of the right nasal, both when present and when removed.
Fig. 4 in A New Species and a New Genus of the Family Pennellidae (Copepoda: Siphonostomatoida) Parasitic on North Pacific Lightfish Maurolicus japonicus (Actinopterygii: Stomiiformes: Sternoptychidae) Collected from Suruga Bay, Japan
Fig. 4. Pseudosarcotretes omorii gen. et sp. nov., copepodids, paratypes (3 and 4, NSMT-Cr 31579, 31580), from the egg string of paratype (2, NSMT-Cr 31578). A, Habitus, dorsal view; B, oral cone; C, antenna; D, antennule; E, leg 1; F, leg 2; G, caudal rami; H, leg 3. Arrows showing bearing parts of leg 3. Scale bars: A, 0.2 mm; B, H, 0.02 mm; C–F, 0.05 mm; G, 0.03 mm.
Fig. 5 in A New Species and a New Genus of the Family Pennellidae (Copepoda: Siphonostomatoida) Parasitic on North Pacific Lightfish Maurolicus japonicus (Actinopterygii: Stomiiformes: Sternoptychidae) Collected from Suruga Bay, Japan
Fig. 5. Phylogenetic tree based on 18S rDNA sequences. INSD accession numbers are shown in parentheses. Arabic numbers of nodes indicate bootstrap values for analyses of maximum likelihood (left) and posterior probabilities (right) for Bayesian inference. The asterisks show that the hatching stages are copepodids.
Fig. 3 in A New Species and a New Genus of the Family Pennellidae (Copepoda: Siphonostomatoida) Parasitic on North Pacific Lightfish Maurolicus japonicus (Actinopterygii: Stomiiformes: Sternoptychidae) Collected from Suruga Bay, Japan
Fig. 3. Pseudosarcotretes omorii gen. et sp. nov., ovigerous adult females, holotype (A–F), and paratype (1, NSMT-Cr 31577: G–I). A, Antennule; B, antenna; C, maxillule, basal part; D, maxillule; E, mandible; F, caudal ramus; G, leg 1, anterior surface; H, leg 2, anterior surface; I, leg 3, anterior surface. Scale bars: A, 0.1 mm; B, 0.25 mm; C, D, F, G–I, 0.05 mm; E, 0.01 mm.
Fig. 2 in A New Species and a New Genus of the Family Pennellidae (Copepoda: Siphonostomatoida) Parasitic on North Pacific Lightfish Maurolicus japonicus (Actinopterygii: Stomiiformes: Sternoptychidae) Collected from Suruga Bay, Japan
Fig. 2. Pseudosarcotretes omorii gen. et sp. nov., ovigerous adult females, holotype (A–F), and paratype (1, NSMT-Cr 31577: G). A, Anteri- or part of cephalothorax, dorsal view; B, habitus, dorsal view (trunk twisted); C, pedigers 1–3, dorsal view; D, posterior part of trunk, lateral view; E, oral cone, lateral view; F, anterior part of trunk, dorsal view; G, anterior part of trunk, dorsal view. Abbreviations: oc, oral cone; pb, proboscis; sp, semicircular processes. Scale bars: A, D, F, G, 0.5 mm; B, 1 mm; C, 0.1 mm; E, 0.05 mm.
Fig. 1 in A New Species and a New Genus of the Family Pennellidae (Copepoda: Siphonostomatoida) Parasitic on North Pacific Lightfish Maurolicus japonicus (Actinopterygii: Stomiiformes: Sternoptychidae) Collected from Suruga Bay, Japan
Fig. 1. Pseudosarcotretes omorii gen. et sp. nov., adult females. A, Whole specimen (arrowed), in-situ on host, after fixation [above, paratype 1 (NSMT-Cr 31577); below, holotype]; B, whole specimen, dissected out of host, dorsal view [paratype 2 (NSMT-Cr 31578)]; C, body region of specimen (paratype 2). Abbreviations: ce, cephalothorax; es, egg strings; ne, neck; tr, trunk. Scale bars: A, 1 cm; B, 2 mm; C, 1 mm.
Fig. 3 in Rediscovery of a Deep-sea Fish Parasite Lophoura cornuta (Copepoda: Sphyriidae) in the Western North Pacific off Hokkaido, Northern Japan
Fig. 3. Lophoura cornuta, adult female, NSMT-Cr 31508. A, Habitus, ventrolateral view, ethanol-preserved specimen; B, cephalothorax and part of neck including holdfast organ, ventral view; C, D, anterior part of cephalothorax, ventrolateral and dorsolateral views, respectively. The specimen was fixed in 70% ethanol on 24 March 1983 and photographed on 9 October 2023. Abbreviations: c, cephalothorax; cp, conical protuberance; ho, holdfast organ; n, neck. Scale bars: A, 10 mm; B, 3 mm; C, D, 0.5 mm.
Fig. 2 in Rediscovery of a Deep-sea Fish Parasite Lophoura cornuta (Copepoda: Sphyriidae) in the Western North Pacific off Hokkaido, Northern Japan
Fig. 2. Lophoura cornuta, adult female, NSMT-Cr 31509. A, Habitus, ventral view; B, C, cephalothorax and part of neck including holdfast organ, ventral and dorsal views, respectively; D, cephalothorax, anterior view. The trunks on the holdfast organ are individually numbered as 1, 2, 3, or 4 (B, C). Abbreviations: cp: conical protuberance; mo: mouth opening. Scale bars: A, 10 mm; B, C, 5 mm; D, 1 mm.
Fig. 1 in Rediscovery of a Deep-sea Fish Parasite Lophoura cornuta (Copepoda: Sphyriidae) in the Western North Pacific off Hokkaido, Northern Japan
Fig. 1. Collection localities of Lophoura cornuta in the western North Pacific off the south coast of Hokkaido, northern Japan, in the previous (open circle) and present (closed circles) studies. Localities 1, 2, and 3 are: off Cape Ochiishi (type locality; Wilson 1919), off Cape Shirepa (this paper), and off Shin-Hidaka (this paper), respectively.
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