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137 results for “Oryza sativa”
Fig. 2 in Mobilization of storage lipid reserve and expression analysis of lipase and lipoxygenase genes in rice (Oryza sativa var. Pusa Basmati 1) bran during germination
Fig. 2. Phylogenetic analysis of rice lipases (Lip). Neighbor-joining (NJ) estimates (with 1000 bootstrap replicates) the phylogenetic relationship between rice and Arabidopsis lipase proteins. AtLip are depicted in green box and six OsLip candidates selected for the study based on the tree are depicted in blue box. Bootstrap values are mentioned in the branches. Branch length is indicated by the scale bar. The Arabidopsis Information Resource (TAIR) and Rice genome annotation project (RGAP) accession numbers are indicated with species names of the lipase proteins. Os, Oryza sativa; At, Arabidopsis thaliana; SDP1, sugar dependent1. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 6 in In silico characterization of the impact of mutation (LEU112PRO) on the structure and function of carotenoid cleavage dioxygenase 8 in Oryza sativa
Fig. 6. Projections of FEL of CCD8 transporter A) Wild-type, (B) Mutant, (C) Complex I (wild-type & auxin complex), (D) Complex II (wild-type & cytokinin complex), (E) Complex III (mutant-auxin complex) and (F) Complex IV (Mutant-cytokinin complex) throughout 100 ns simulation. Several colours in panel suggests motion range. White: highest energy configuration; Dark black: lowest energy configuration. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 7 in In silico characterization of the impact of mutation (LEU112PRO) on the structure and function of carotenoid cleavage dioxygenase 8 in Oryza sativa
Fig. 7. "Three-dimensional" representation of intermolecular interaction in (A) Complex I, (B) Complex II, (C) Complex III and (B) Complex IV after 100 ns simulation. Green, cyan and red color represent wildtype CCD8 protein, mutant CCD8 protein and auxin/ cytokinin, respectively. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 3 in In silico characterization of the impact of mutation (LEU112PRO) on the structure and function of carotenoid cleavage dioxygenase 8 in Oryza sativa
Fig. 3. The "Z-score" plot of modelled CCD8 protein produced from the "ProSA-web" server. (A) Wild-type (Before simulation), (B) Wild-type (After 100 ns simulation) and (C) Mutant (After 100 ns simulation).
Fig. 4. The stability parameters for modelled D10 in In silico characterization of the impact of mutation (LEU112PRO) on the structure and function of carotenoid cleavage dioxygenase 8 in Oryza sativa
Fig. 4. The stability parameters for modelled D10 protein: wild-type (Blue), mutant (Green), Complex I (wild-type & auxin complex) (orange), Complex II (wild-type & cytokinin complex) (purple), Complex III (mutant-auxin complex) (red) and (D) Complex IV (mutant-cytokinin complex) (black) throughout 100 ns simulation: (A) RMSD, (B) RMSF, (C) PCA of C-α movement, and (D) Radius of gyration. The trajectory projected to the two-dimensional space. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in In silico characterization of the impact of mutation (LEU112PRO) on the structure and function of carotenoid cleavage dioxygenase 8 in Oryza sativa
Fig. 2. "Ramachandran plot" of three-dimensional CCD8 protein produced through "PROCHECK". (A) Wild-type (Before simulation), (B) Wild-type (After 100 ns simulation) and (C) Mutant (After 100 ns simulation).
Fig. 1 in In silico characterization of the impact of mutation (LEU112PRO) on the structure and function of carotenoid cleavage dioxygenase 8 in Oryza sativa
Fig. 1. "Three-dimensional" structure of CCD8 protein. (A) "Super-impose" structure of Wild-type CCD8 protein (green) and chain A of 4RSE (Red) (A) Wild-type is made up of 10 α-helix and 25 β-strands. (B) Mutant is made up of 11 α-helix and 24 β- strands. Light grey: loop; red: α-helix and cyan: β- strands. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Effect of Oryza Sativa l Extract to LPS, ZO-1, and Intestinal Microbiota in Obese Individuals
ClinicalTrials.gov study NCT04827628. IPD Sharing: NO. Countries: 1. Publications: 11.
Data from: Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.)
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Data from: A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa
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Data from: Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.)
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Data from: Domestication and geographic origin of Oryza sativa in China: insights from multilocus analyses of nucleotide variation of O. sativa and O. rufipogon
Previous studies have indicated that China is one of the domestication centres of Asian cultivated rice (Oryza sativa), and common wild rice (O. rufipogon) is the progenitor of O. sativa. However, the number of domestication times and the geographic origin of Asian cultivated rice in China are still under debate. In this study, 100 accessions of Asian cultivated rice and 111 accessions of common wild rice in China were selected to examine the relationship between O. sativa and O. rufipogon and thereby infer the domestication and evolution of O. sativa in China through sequence analyses of six gene regions, trnC-ycf6 in chloroplast genomes, cox3 in mitochondrial genomes and ITS, Ehd1, Waxy, Hd1 in nuclear genomes. The results indicated that the two subspecies of O. sativa (indica and japonica) were domesticated independently from different populations of O. rufipogon with gene flow occurring later from japonica to indica; Southern China was the genetic diversity centre of O. rufipogon, and the Pearl River basin near the Tropic of Cancer was the domestication centre of O. sativa in China.
Figure 2 from: Hartati FK, Nafisah W, Sutanto A, Saati EA, Khairoh M, Sjamsiah (2024) Aqueous black rice (Oryza sativa L. indica) extract enhanced the activation of CD4+ and CD8+ T cells in mouse breast cancer model. Pharmacia 71: 1-7. https://doi.org/10.3897/pharmacia.71.e113442
Figure 2 Aqueous black rice (ABR) extract reduced the relative number of CD4+IL17+, CD4+TNFα+, and CD4+IFNγ+ cytokine production. A, C, E. were flow cytometry diagram; B, D, F. were the graph of flow cytometry results. The bar in the graph shows the calculation results as the mean ± SD of the relative number of cytokine production. *P<0.05, indicate significant different. The group in this study were normal group; Cancer, DMBA 15 mg/kg BW; Cis, DMBA 15 mg/kg BW + Cisplatin 5 mg/kg BW; ABR1, DMBA 15 mg/kg BW + aqueous black rice extract 0.2 g/kg BW; ABR2, DMBA 15 mg/kg BW + aqueous black rice extract 0.3 g/kg BW; ABR3, DMBA 15 mg/kg BW + aqueous black rice extract 0.4 g/kg BW; ABR4, DMBA 15 mg/kg BW + aqueous black rice extract 0.5 g/kg BW.
Figure 1 from: Hartati FK, Nafisah W, Sutanto A, Saati EA, Khairoh M, Sjamsiah (2024) Aqueous black rice (Oryza sativa L. indica) extract enhanced the activation of CD4+ and CD8+ T cells in mouse breast cancer model. Pharmacia 71: 1-7. https://doi.org/10.3897/pharmacia.71.e113442
Figure 1 Aqueous black rice (ABR) extract increased the relative number of CD4+CD62L- cells and CD8+CD62L- cells. A, C. Show flow cytometry diagrams, and B, D. Show graphs of the flow cytometry results. The bars in the graphs show the calculated results as the mean ± SD of the relative number of CD4+ and CD8+ cell activations. *P<0.05 indicates a significant difference. The groups in this study included the following groups: Normal; Cancer, DMBA 15 mg/kg BW; Cis, DMBA 15 mg/kg BW + Cisplatin 5 mg/kg BW; ABR1, DMBA 15 mg/kg BW + ABR extract 0.2 g/kg BW; ABR2, DMBA 15 mg/kg BW + ABR extract 0.3 g/kg BW; ABR3, DMBA 15 mg/kg BW + ABR extract 0.4 g/kg BW; and ABR4, DMBA 15 mg/kg BW + ABR extract 0.5 g/kg BW.
Figure 3 from: Hartati FK, Nafisah W, Sutanto A, Saati EA, Khairoh M, Sjamsiah (2024) Aqueous black rice (Oryza sativa L. indica) extract enhanced the activation of CD4+ and CD8+ T cells in mouse breast cancer model. Pharmacia 71: 1-7. https://doi.org/10.3897/pharmacia.71.e113442
Figure 3 Aqueous black rice (ABR) extract effect on mammary mice histology based on Hematoxylin & Eosin staining (M: 400x). D, ductal; AT, adipose tissue; arrow, cancer cell. The group in this study were normal group; Cancer, DMBA 15 mg/kg BW; Cis, DMBA 15 mg/kg BW + Cisplatin 5 mg/kg BW; ABR1, DMBA 15 mg/kg BW + aqueous black rice extract 0.2 g/kg BW; ABR2, DMBA 15 mg/kg BW + aqueous black rice extract 0.3 g/kg BW; ABR3, DMBA 15 mg/kg BW + aqueous black rice extract 0.4 g/kg BW; ABR4, DMBA 15 mg/kg BW + aqueous black rice extract 0.5 g/kg BW.
Effect of planting density on growth characteristics and grain yield increase in successive cultivations of two rice (Oryza sativa L.) cultivars
<p><span>Rice (<i>Oryza sativa</i> L.) re-cultivation plays an important role in increasing land productivity and efficiency in crop rotation. Planting density (PD) is an important agronomic factor to achieving maximum grain yield (GY). The current study aimed to determine the best PD for the first cultivation and re-cultivation of rice. The experiment was conducted as a split plot based on the randomized complete block design with three replications at Ghaemshahr University, Mazandaran (northern Iran) from 2013 to 2014. Treatments consisted of cultivar, i.e. Tarom Hashemi and Koohsar, at two levels as the main factor and PDs at the three levels of 16, 25, and 33.3 hills m<sup>-2</sup> with planting spaces of 25 × 25, 20 × 20, and 30 × 10 cm<sup>2</sup>, respectively, as the sub factor. The results of the current study showed that cultivar for the first cultivation, and year for the re-cultivation had a significant effect on GY. PD had a significant effect on GY in both first cultivation and re-cultivation. The GY of Hashemi in the first cultivation (36.1%) and re-cultivation (18.5%) was higher than that of Koohsar. GY in the first cultivation and re-cultivation had an increasing trend; PD increased up to 33.3 hills m<sup>-2</sup> as 19.9% and 21.4% in the first cultivation and re-cultivation, respectively, due to the increase in number of panicles m<sup>-2</sup> (30.1% and 30.6%, respectively). Hashemi is suitable for the first cultivation. It is noteworthy, also, that a density of 33.3 hills m<sup>-2</sup> is recommended for the first cultivation and re-cultivation.</span></p>
Data from: Hybrid breakdown caused by epistasis-based recessive incompatibility in a cross of rice (Oryza sativa L.)
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Data from: Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines
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Effect of planting density on growth characteristics and grain yield increase in successive cultivations of two rice (Oryza sativa L.) cultivars
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Data from: Domestication and geographic origin of Oryza sativa in China: insights from multilocus analyses of nucleotide variation of O. sativa and O. rufipogon
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