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76 results for “Ramalinaceae”
Figure 11 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 11 Species in RamalinaA, BR. krogiae (holotype) C–ER. requienii (France, Corsica). Scale: 1 cm (A–D); scale in E identical to D. Photographs by E. Sérusiaux.
Figure 10 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 10 Ramalina breviuscula aggr A, BR. breviuscula, type locality in France, eastern Pyrenees (photographs taken in the field) C, DRamalina sp. 2 (France, Corsica). Scale: 1 mm (C, D). Photographs by E. Sérusiaux.
Figure 8 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 8 Evolutionary tree for the genera Niebla and Vermilacinia, produced with the 6-locus matrix and using *BEAST (Matrix 2). Values above branches represent posterior probabilities of support. Epithets in colour following insert: green = collected in USA/California; pink = collected in Mexico/Baja California; blue = collected in Mexico/Baja California Sur. Similarity matrix from the STACEY analysis on the right. Each rectangle represents posterior probability (white = 0, black = 1) of pairs of specimens to belong to the same species. Shades of grey represent intermediate values. Rectangles delimited by red lines represent the species delimitation with a 0.3 cut-off.
Supplementary material 8 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Identification of the chemistry of Ramalina rosacea
Figure 12 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 12 Species in RamalinaAR. crispans (holotype: left-hand specimen; other specimen from Morocco: right-hand) BR. lusitanica (Morocco, leg. J. Gattefosse, BC) C, DR. lusitanica (Italy/Sardinia, accession LG DNA 1525). Scale: 1 mm (C). Photographs by E. Sérusiaux.
Figure 3 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 3 A Landscape in Baja California, San Quintín where Ramalina crinita thrives BR. crinita; C Landscape of the Skeleton Coast Park in Namibia where Namibialina "angulosa" and N. melanothrix thrive DN. melanothrixE–FN. "angulosa 1" (E) and N. "angulosa 2" (F). Photographs by E. Sérusiaux.
Supplementary material 7 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Table S7. Data for the Niebla collections studied
Figure 1 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 1 Landscapes of Baja California and Baja California Sur. A Arenicolous species of Niebla in sand dunes at San Quintín BCB saxicolous species of Niebla over dark volcanic rocks at San Quintín BCC twigs of Lycium covered with fruticose Roccella and Vermilacinia at San Quintín BCD Free-living species of Niebla on "red" rocky slopes at Punta Baja BCE landscapes of the peninsula de Vizcaíno F gypsicolous rocks near the sea at Bahia Ascunsion BCS with Niebla lobulataG chaparral near Bahia Tortugas BCS H outcrops subjected to intermittent fog near Bahia Tortugas BCS. Photographs by E. Sérusiaux and R. Spjut.
Supplementary material 2 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Table S2. PCR conditions and primers for each locus
Figure 5 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 5 Several species of Niebla and Vermilacinia. Identifications based on Spjut (1996)ANiebla limicola on sand dunes at Guerrero Negro BCS BN. marinii at Santo Domingo BCCN. podetiaforma at Punta Baja BCDN. siphonoloba at San Antonio BCEVermilacinia cerebra at San Antonio BCFNiebla lobulata at Bahía de Tortugas BCS GVermilacinia leopardina on branches at San Quintín BCHV. procera on rocks at San Quintín BC. Photographs by E. Sérusiaux and R. Spjut.
Supplementary material 3 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Table S3. Table of accessions of the lichen collections studied
Figure 2 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 2 Species of Ramalina on rocky seashores in Italy/Sardinia A general view of species and habitat B from left to right: R. tingitana, R. breviuscula and R. cribrosaCR. implexaD from left to right: R. clementeana and R. requieniiER. tingitanaFR. inaequalis. Photographs by M. Guissard and E. Sérusiaux.
Figure 9 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 9 Evolutionary tree for the genera Namibialina and Ramalina (subset of Matrix 1). The tree is a close-up of Figure 6. Values above branches represent the posterior probabilities of support. Table on right side provides further information for all accessions: column 1-4: ß-depsidones (protocetraric acid, salazinic acid, stictic acid, norstictic acid); column 5-8: depsides (divaricatic acid, sekikaic acid, evernic acid, lecanoric acid); column 9: triterpenes; column 10: bourgeanic acid; column 11: unknown fatty acid; greyish colour through columns 1-11 for two accessions (R. complanata and R. crinita) means that no data are available.
Supplementary material 4 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Table S4. Time calibration
Figure 4 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 4 Several species of RamalinaAR. hoehneliana, hanging down the branches of a large Strombosia scheffleri in Gishwati forest (Rwanda) BR. sinensis (Armenia) CR. azorica (Azores, Pico) DR. huei (Canary Is., Tenerife) ER. nodosa (Canary Is., Tenerife). Photographs by E. Sérusiaux.
Figure 7 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Figure 7 Evolutionary tree for the genera Niebla and Vermilacinia, produced with the 6-locus matrix (Matrix 2) and using RAxML. Support value for branches follow Lemoine et al. (2018). Epithets in colour following insert: green = collected in USA/California; pink = collected in Mexico/Baja California; blue = collected in Mexico/Baja California Sur. Table on right side provides further information for all accessions: column 1-3: ß-depsidones (protocetraric acid, salazinic acid, hypoprotocetraric acid); column 4-5: depsides (divaricatic acid, sekikaic acid); column 6-11: [-]-16α-hydroxykaurane, triterpenes T1, T2, T3, unidentified triterpenes, zeorin; column 12-13: fatty acid, usnic acid; greyish colour through columns 1-13 for one accession (V. cephalota) means that no data are available; column 14–17: results of species delimitation methods: 14 = ABGD; 15 = PTP on 1 locus; 16 = BPP; 17 = STACEY.
Supplementary material 5 from: Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E (2020) The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 73: 1-68. https://doi.org/10.3897/mycokeys.73.47287
Table S5. Comparison of the identification of the Niebla collections
Figure 1 from: Kistenich S, Rikkinen JK, Thüs H, Vairappan CS, Wolseley PA, Timdal E (2018) Three new species of Krogia (Ramalinaceae, lichenised Ascomycota) from the Paleotropics. MycoKeys 40: 69-88. https://doi.org/10.3897/mycokeys.40.26025
Figure 1 Hypothesis of the phylogenetic relationships and placement of the 15 Krogia accessions. It shows the extended majority-rule consensus tree resulting from the Bayesian MCMC analysis with Bayesian PP ≥ 0.7 (above branch) and/or Garli maximum likelihood BS ≥ 50 (below branch) and branch lengths. Strongly supported branches (PP ≥ 0.95 and BS ≥ 95) are marked in bold; branches with PP ≥ 0.95 and BS ≥ 70 are marked in bold grey; branches only supported by PP ≥ 0.7 are marked with an asterisk above the branch. Bacidiarosella, B.rubella and B.sipmanii were used as outgroup. Scale bar indicates 0.05 changes per site.
Figure 4 from: Kistenich S, Rikkinen JK, Thüs H, Vairappan CS, Wolseley PA, Timdal E (2018) Three new species of Krogia (Ramalinaceae, lichenised Ascomycota) from the Paleotropics. MycoKeys 40: 69-88. https://doi.org/10.3897/mycokeys.40.26025
Figure 4 KrogiamacrophyllaA field photograph of JR36047B field photograph of holotype C herbarium photograph of holotype. Scale bar: 1 mm. Photo: J. Rikkinen (A, B), E. Timdal (C).
Figure 3 from: Kistenich S, Rikkinen JK, Thüs H, Vairappan CS, Wolseley PA, Timdal E (2018) Three new species of Krogia (Ramalinaceae, lichenised Ascomycota) from the Paleotropics. MycoKeys 40: 69-88. https://doi.org/10.3897/mycokeys.40.26025
Figure 3 Krogiaisidiata.A field photograph of JR35688B field photograph of JR35034C herbarium photograph of holotype. Scale bar: 1 mm. Photo: J. Rikkinen (A, B), E. Timdal (C).
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