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Dataset results
49 results for “Serratia”
Transcriptomic responses of Serratia liquefaciens cells grown under simulated Martian conditions of low temperature, low pressure, and CO2-enriched anoxic atmosphere.
GEO Series GSE120390. Serratia liquefaciens. 12 samples. Type: Expression profiling by high throughput sequencing.
Effect of deletion of the ipdc gene, involved in indole-3-acetic acid synthesis, in the biocontrol agent Serratia plymuthica A153
GEO Series GSE226107. Serratia plymuthica. 6 samples. Type: Expression profiling by high throughput sequencing.
Spaceflight and simulated microgravity conditions increase virulence of Serratia marcescens in the Drosophila melanogaster infection model
GEO Series GSE138116. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
Ambigols from the Cyanobacterium Fischerella ambigua increase Prodigiosin Production in Serratia sp.
GEO Series GSE151437. Prodigiosinella confusarubida. 6 samples. Type: Expression profiling by high throughput sequencing.
Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica
GEO Series GSE248473. Serratia plymuthica. 9 samples. Type: Expression profiling by high throughput sequencing.
Competitive behaviours in Serratia marcescens are coordinately regulated by a lifestyle switch frequently inactivated in the clinical environment
GEO Series GSE273522. Serratia marcescens. 20 samples. Type: Expression profiling by high throughput sequencing.
Volatile organic compounds from Bacillus, Serratia and Pseudomonas promote growth and alter the transcriptional landscape of Solanum tuberosum in a passively-ventilated growth system
GEO Series GSE160297. Solanum tuberosum. 12 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacterial Serratia proteamaculans and Serratia plymuthica
GEO Series GSE66652. Rhizoctonia solani AG-3 Rhs1AP. 9 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic Analysis of the Serratia marcescens Response to Batrachochytrium dendrobatidis
GEO Series GSE84057. Serratia marcescens. 6 samples. Type: Expression profiling by high throughput sequencing.
Drosophila melanogaster midgut transcriptome analysis after an oral infection by the entomopathogen bacteria Serratia marcescens
GEO Series GSE60504. Drosophila melanogaster. 6 samples. Type: Expression profiling by high throughput sequencing.
A widely-occurring family of pore-forming effectors broadens the impact of the Serratia Type VI secretion system
GEO Series GSE301252. Pseudomonas simiae. 9 samples. Type: Other.
C. elegans young adults: Exposed to Serratia marcescens versus exposed to E. coli OP50 : 4 hours
GEO Series GSE36499. Caenorhabditis elegans. 4 samples. Type: Expression profiling by array.
The Serratia marcescens siderophore, serratiochelin, is necessary for full virulence during bloodstream infection
GEO Series GSE145587. Serratia marcescens. 4 samples. Type: Expression profiling by high throughput sequencing.
P. pacificus young adults: Exposed to Serratia marcescens versus exposed to E. coli OP50 : 4 hours
GEO Series GSE36521. Pristionchus pacificus. 4 samples. Type: Expression profiling by array.
Spaceflight and simulated microgravity conditions increase virulence of Serratia marcescens in the Drosophila melanogaster infection model
While it has been shown that astronauts suffer immune disorders after spaceflight, the underlying causes are still poorly understood and there are many variables to consider when investigating the immune system in a complex environment. Additionally, there is growing evidence that suggests that not only is the immune system being altered, but the pathogens that infect the host are significantly influenced by spaceflight and ground-based spaceflight conditions. In this study, we demonstrate that Serratia marcescens (strain Db11) was significantly more lethal to Drosophila melanogaster after growth on the International Space Station than ground-based controls, but that the host immune system is not significantly altered amongst known immune genes. High-throughput sequencing of wild-type (w1118) adult hosts infected with either space or ground-reared S. marcescens revealed few changes in gene expression, with 11 genes significantly differentially expressed (q-values less than 0.05) and only one gene related to the immune system. This data supports the main findings of the paper, which state that both spaceflight and low-shear modeled microgravity conditions increase the virulence of this pathogen, independent of the host immune system. This data, which shows that there are no significant immune-related changes to the host when infected with space-grown sample compared to ground-grown sample, provides further evidence that there are likely phenotypic changes to the pathogen itself that is causing increased virulence in spaceflight and in low-shear modeled microgravity. RNA was extracted in triplicate from 2 pooled adult (2-3 day old female) Drosophila melanogaster (w1118) per treatment, with 4 total treatment groups (no injection control, sham injection with PBS, ground bacteria-injected, and space bacteria-injected) with poly(A)+ RNA libraries. Samples were multiplexed and sequenced 100bp paired-end ready were sequenced on one lane of the Illumina HiSeq-4000.
An XRE-superfamily transcriptional regulator XrpA controls low pH tolerance of Serratia marcescens
GEO Series GSE137185. Serratia marcescens WW4. 2 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional impact of eepR mutation in Serratia marcescens
GEO Series GSE155648. Serratia marcescens. 8 samples. Type: Expression profiling by high throughput sequencing.
Response of human corneal epithelial cells to the secretomes of wild-type Serratia marcescens and an eepR mutant strain
GEO Series GSE71320. Homo sapiens. 6 samples. Type: Expression profiling by array.
Transcriptional impact of gumB mutation in Serratia marcescens
GEO Series GSE151031. Serratia marcescens. 6 samples. Type: Expression profiling by high throughput sequencing.
Serratia marcescens gene expression mediated by EepR, Rcs system, and GntR-family regulator
GEO Series GSE152115. Serratia marcescens. 24 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.