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Long-term monitoring of stormwater runoff and water quality in urbanized watersheds of the greater Phoenix metropolitan area, ongoing since 2008
Urbanization alters dramatically watershed ecosystem processes. Land-use change and anthropogenic activities contribute to increased inputs of nutrients and other materials, while changes to land cover alter hydrology and the corresponding movement of materials. These changes have ramifications for both watershed processes and downstream systems. The impacts of urbanization on aquatic systems are well-studied, and frequently encapsulated in the ‘urban stream syndrome’ (Walsh et al. 2005) that describes, among others, increased nutrient loading and stream flashiness. However, there is some evidence that aridland cities behave differently (Grimm et al. 2004, 2005), and the complex dynamics among catchment characteristics, storm attributes, and runoff in highly urbanized settings of the arid Southwest remains poorly understood. To enhance our understanding of stormwater dynamics and watershed functioning in aridland, urban environments, the Central Arizona–Phoenix Long-Term Ecological Research (CAP LTER) program began monitoring stormwater runoff at the outflow of the Indian Bend Wash (IBW) in 2008. The IBW is a tributary to the Salt River in central Arizona, and is a major drainage within the greater Phoenix metropolitan area, encompassing much of the City of Scottsdale. A model of soft engineering, the IBW as it runs through much of the City of Scottsdale is comprised largely of a series of artificial lakes, parks, paths, golf courses, ball fields, and other non-structural elements designed with the dual roles of providing outdoor amenities to the City residents while serving as an effective flood water conveyance feature. A unique biogeochemistry of this novel system is detailed by Roach et al. (2008), and Roach and Grimm (2011). Stormwater sampling is conducted at numerous locations. The longest running sampling location is near the outflow of the IBW ~0.6 km above its confluence with the Salt River. The sampling location coincides with a permanent USGS gauging sta
Long-term monitoring of ground-dwelling arthropods in the McDowell Sonoran Preserve, Scottsdale, Arizona (2012-2025)
*Project overview* Protected lands, such as the McDowell Sonoran Preserve (hereafter referred to as the Preserve) in Scottsdale, Arizona, provide critical refuge for native biota and natural, ecological processes within and near urban environments. At the same time, a key feature that makes urban, open-space preserves so valuable − their proximity to urban areas − places strain on the ecological integrity of these systems through visitation, habitat fragmentation, and the introduction of exotic species among others. Effective management of these systems requires detailed knowledge of the biota within the protected area, and monitoring of ecological indicators through time. Arthropods are well suited to monitoring ecological health. This diverse group of organisms typically reflects overall biological diversity of a system, and includes several trophic levels; their short generation times mean they will likely respond quickly to change; and they are relatively easy to sample. As part of a broad effort by the McDowell Sonoran Conservance Field Institute, an organization that oversees science and research in Preserve, to establish a baseline inventory of biota in the Preserve, investigators with the Central Arizona−Phoenix Long-Term Ecological Research (CAP LTER) program at Arizona State University (ASU) in collaboration with Field Institute Citizen Scientists are monitoring ground-dwelling arthropods at select locations that reflect a diversity of habitat within the Preserve. Investigators employ a sampling design that is intended to provide insight regarding influence of the urban-wildland interface on the arthropod community within the protected area. The simple but effective technique of pitfall trapping is used to sample ground-dwelling arthropods at select locations spanning a wide range of habitat with the Preserve. Additional collections of vegetation-dwelling arthropods have been conducted at the sampling locations at periodic intervals. *Project design and sa
Long-term composited land surface temperature for the greater Phoenix, Arizona, USA, metropolitan area and the surrounding Sonoran desert derived from annual and seasonal Landsat imagery, 1998 to 2023
This data package consists of multiple decades of land surface temperature (LST) raster data across the Central Arizona-Phoenix Long-Term Ecological Research (CAP LTER) study area within metropolitan Phoenix, Arizona (USA), temporally aggregated by year and by four meteorological seasons (Winter, Spring, Summer, Fall). We derived LST values based on the thermal band from annual and seasonal composites of 30-m resolution Landsat 5-9 Level-2 Surface Reflectance imagery. All imagery retrieval and data processing were completed with Google Earth Engine (Gorelick et al. 2017) and program R. A complete description of data processing methods, including the aggregation of imagery by year and season and the calculation of the spectral index, can be found in the data package metadata (see 'Methods and Protocols') and accompanying Javascript code. ### citations: - Gorelick N, Hancher M, Dixon M, et al. (2017) Google Earth Engine: Planetary-scale geospatial analysis for everyone. Remote Sensing of Environment 202:18–27. https://doi.org/10.1016/j.rse.2017.06.031
Long-term seasonally and annually aggregated climatic variables for the greater Phoenix, Arizona, USA, metropolitan area and the surrounding Sonoran desert, derived from single-day NASA Daymet images, 2000 to 2022
This data package consists of multiple decades of bioclimatic raster data across the Central Arizona-Phoenix Long-Term Ecological Research (CAP LTER) study area within metropolitan Phoenix, Arizona, USA, temporally aggregated by year and by four meteorological seasons (winter, spring, summer, fall). We sourced each bioclimatic variable from 1-km resolution gridded estimates of daily climatic data from NASA Daymet V4, including daily mean (ppt) and total precipitation (ppt_sum), daily maximum air temperature (temp_max), daily minimum air temperature (temp_min), incident shortwave radiation flux density (srad), and daily average partial pressure of water vapor (vp). For each of these six variables, we created temporally aggregated raster images by calculating mean pixel-values of each for each season and year, as well as producing a seventh variable of seasonally and annually summed precipitation (ppt_sum). Finally, we exported images as individual GeoTIFF raster files, each with five bands corresponding values summarized annually (band 1) and seasonally (bands 2-5). All imagery retrieval and data processing were completed with Google Earth Engine (Gorelick et al. 2017) and program R. A complete description of data processing methods, including the aggregation of imagery by year and season, can be found in the data package metadata (see 'Methods and Protocols') and accompanying Javascript code. ### citations - Gorelick N, Hancher M, Dixon M, et al. (2017) Google Earth Engine: Planetary-scale geospatial analysis for everyone. Remote Sensing of Environment 202:18–27. https://doi.org/10.1016/j.rse.2017.06.031
Sediment elevation measurements from the GCE LTER Seawater Addition Long-Term Experiment (SALTEx) sampling sites from July 2013 to August 2022
SALTEx (Seawater Addition Long-Term Experiment) is a field experiment designed to simulate saltwater intrusion in a tidal freshwater wetland to predict how chronic (Press) and acute (Pulse) salinization will affect this and other tidal freshwater ecosystems. The SALTEx experiment was initiated in 2012 and consists of 31 field plots, each 2.5 m on a side. There are three treatments (Press, Pulse, and Fresh) and two types of controls (with and without sides), each consisting of six replicates. The Press treatment plots receive regular (4 times each week) additions of a mixture of seawater and fresh river water. Pulse plots receive the same mixture of seawater and river water during September and October, which is historically a time of low flow in the river when natural saltwater intrusion occurs. The Fresh treatment plots receive regular additions of fresh river water. Treatment water is added during low tide to facilitate its infiltration into the soil, and all plots are inundated by astronomical tides at high tide. We are measuring soil surface elevation tables (SETs) in the plots as one of the response variables for the SALTEx project.
Long-term monitoring of seven high marsh plant mixtures on Sapelo Island GA
We set up plots (1x2m) in 1996 in mixtures or on vegetation borders at three sites. We set up 16 plots for each of seven mixtures - Marsh Landing (Juncus-Meadow, Spartina-Meadow, and Spartina-Batis mixtures), Teal Boardwalk (Juncus-Spartina mixture) and Shell Hammock (Juncus-Spartina, Juncus-Meadow, and Spartina-Meadow mixtures). Half were watered with fresh water 3 times per week (W) and half were controls (C). Watering stopped in April 2000. Plots were monitored to document changes in plant community composition (percent cover) over time.
Long-term soil salinity and organic content from the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia
Soil samples were collected in conjunction with annual plant monitoring at half of the permanent vegetation monitoring plots in the creekbank and midmarsh zones at 10 GCE study sites beginning in 2009. Pore-water salinity was determined by analysis of supernatant salinity in dried soil samples hydrated with a measured volume of deionized water. Organic content was measured gravimetrically by comparing ash-free dry weight and total weight of soil samples.
Percent cover measurements of four site-dominant species from the GCE-LTER Seawater Addition Long-Term Experiment (SALTEx) Project
SALTEx (Seawater Addition Long-Term Experiment) is a field experiment designed to simulate saltwater intrusion in a tidal freshwater wetland to predict how chronic (Press) and acute (Pulse) salinization will affect this and other tidal freshwater ecosystems. The SALTEx experiment was initiated in 2012 and consists of 31 field plots, each 2.5 m on a side. There are three treatments (Press, Pulse, and Fresh) and two types of controls (with and without sides), each consisting of six replicates. The Press treatment plots receive regular (4 times each week) additions of a mixture of seawater and fresh river water. Pulse plots receive the same mixture of seawater and river water during September and October, which is historically a time of low flow in the river when natural saltwater intrusion occurs. The Fresh treatment plots receive regular additions of fresh river water. Treatment water is added during low tide to facilitate its infiltration into the soil, and all plots are inundated by astronomical tides at high tide. Percent cover was measured for four site-dominant species (Zizaniopsis miliacea, Pontederia cordata, Persicaria hydropiperoides, and Ludwigia repens) each July from 2013 to 2022.
Photosynthetic available radiation (PAR) measurements from the GCE-LTER Seawater Addition Long-Term Experiment (SALTEx) Project
SALTEx (Seawater Addition Long-Term Experiment) is a field experiment designed to simulate saltwater intrusion in a tidal freshwater wetland to predict how chronic (Press) and acute (Pulse) salinization will affect this and other tidal freshwater ecosystems. The SALTEx experiment was initiated in 2012 and consists of 31 field plots, each 2.5 m on a side. There are three treatments (Press, Pulse, and Fresh) and two types of controls (with and without sides), each consisting of six replicates. The Press treatment plots receive regular (4 times each week) additions of a mixture of seawater and fresh river water. Pulse plots receive the same mixture of seawater and river water during September and October, which is historically a time of low flow in the river when natural saltwater intrusion occurs. The Fresh treatment plots receive regular additions of fresh river water. Treatment water is added during low tide to facilitate its infiltration into the soil, and all plots are inundated by astronomical tides at high tide. Light availability was measured using photosynthetically active radiation (PAR) both above and below the plant canopy.
Belowground biomass measurements from the GCE-LTER Seawater Addition Long-Term Experiment (SALTEx) Project
SALTEx (Seawater Addition Long-Term Experiment) is a field experiment designed to simulate saltwater intrusion in a tidal freshwater wetland to predict how chronic (Press) and acute (Pulse) salinization will affect this and other tidal freshwater ecosystems. The SALTEx experiment was initiated in 2012 and consists of 31 field plots, each 2.5 m on a side. There are three treatments (Press, Pulse, and Fresh) and two types of controls (with and without sides), each consisting of six replicates. The Press treatment plots receive regular (4 times each week) additions of a mixture of seawater and fresh river water. Pulse plots receive the same mixture of seawater and river water during September and October, which is historically a time of low flow in the river when natural saltwater intrusion occurs. The Fresh treatment plots receive regular additions of fresh river water. Treatment water is added during low tide to facilitate its infiltration into the soil, and all plots are inundated by astronomical tides at high tide. Belowground biomass was sampled from in each plot in March 2017 after 3 years of dosing.
Long-Term Impacts of the Hemlock Woolly Adelgid on Forest Carbon at Harvard Forest 2008-2011
The abundance of eastern hemlock (Tsuga canadensis) in eastern US forests has declined since the 1950s owing to the introduction of the non-native insect, hemlock woolly adelgid (HWA, Adelges tsugae). In southern New England, eastern hemlock is being replaced by the deciduous tree species, black birch (Betula lenta). To date there is little understanding of whether hemlock loss will fundamentally alter ecosystem C balance and component fluxes. In this study, we use a comparative approach to study potential changes in C fluxes and storage and N cycling associated with HWA-induced hemlock decline and replacement. The stands include primary- and secondary-growth hemlock forests (230 and 132 years old, respectively), recently disturbed stands (5 and 18 years old) that now have rapidly growing black birch saplings, and a mature black birch stand of age similar to the second-growth hemlock stand. We addressed the question of whether the quantity and distribution of C pools in black birch forests are the same as those found in the hemlock stands they replace and, if so, over what time scales. We found that if HWA did not infest hemlock stands in central MA, C stocks in these secondary stands could still increase by at least 30% over a period of 100 years. Girdling, intended to simulate HWA infestation, resulted in a large transfer of C from live biomass to coarse woody debris five years after treatment, but had little effect on total ecosystem C content. A former hemlock stand killed by HWA and now dominated by black birch saplings also had a large pool of highly decayed CWD and a rapidly aggrading C pool in live biomass. C pools in biomass in a mature, secondary growth black birch stand 135 years since pastureland abandonment were as large as those in a primary-growth hemlock stand 235 years of age. We also found that aboveground net primary production was higher in the aggrading black birch stand and significantly so at 18-years post-HWA compared to the secondary-hemlock
Long-Term Dynamics of Oak and Chestnut in Central Massachusetts from 3500 BP to Present
Despite decades of study we have limited insights into the nature of the pre-European landscape of the northeastern USA and the forces and changes that shaped modern forest patterns. Information on such long-term forest dynamics would provide critical insights into the relationships among environmental change, land-use history and biotic responses and is greatly needed for conservation planning. To address these issues we used modern, historical, and paleoecological approaches to reconstruct the 3500-year history of a New England upland region dominated by oak and (formerly) chestnut forests and to interpret the interactions among climate change, natural and human disturbance, and site factors in controlling vegetation patterns and dynamics at different spatial scales. The results indicate that stand, landscape and regional forest dynamics were most strongly driven by climate, notably an apparent cooling and increase in moisture availability c. 1500 yr BP, and European land-use activities commencing 260 yr BP. However, the abundance of oak and chestnut (fire-tolerant, sprouting species) and the distribution of hemlock (fire-intolerant) at a stand to landscape scale were also influenced by fire, which, in turn, varied with climate and human activity. Despite, or perhaps as a consequence of ongoing disturbance by fire and presumably windstorms in this hurricane-prone region, the pre-European period was marked by two 1000+ year periods of remarkably stable forest composition, separated by an abrupt compositional shift. In contrast, over the past 260 years the vegetation has changed rather continuously in response to human activity, producing stand, landscape and regional patterns that are novel as well as recent in origin. Chestnut was a major component of some pre-European landscapes in New England, in part because of occasional fire, and that cultural and physical factors have interacted over millennia to control vegetation patterns and dynamics. Our analyses also su
North Temperate Lakes LTER Long-term winter chemical limnology and days since ice-on for primary study lakes 1982 - 2014
This data set integrates long-term data sets on winter nutrient chemistry with ice phenology (number of days since ice-on), focusing on the subset of measurements taken during ice cover. Parameters characterizing limnology of 5 primary lakes (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes, are measured at one station in the deepest part of each lake at the surface, middle, and deep (~1 meter above bottom). These parameters include nitrate-N, ammonium-N, total dissolved phosphorus, dissolved inorganic carbon, water temperature, dissolved oxygen, and pH. Water temperature and dissolved oxygen values are the zonal averages from more complete depth profiles. Sampling Frequency: every 6 weeks during ice-covered season for the northern lakes. Number of sites: 5
Long-term fish size data for Wisconsin Lakes Department of Natural Resources and North Temperate Lakes LTER 1944 - 2012 (Reformatted to the ecocomDP Design Pattern)
This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-ntl/357/2. The abstract below was extracted from the Level 0 data package and is included for context: This dataset describes long-term (1944-2012) variations in individual fish total lengths from Wisconsin lakes. The dataset includes information on 1.9 million individual fish, representing 19 species. Data were collected by Wisconsin Department of Natural Resource fisheries biologists as part of routine lake fisheries assessments. Individual survey methodologies varied over space and time and are described in more detail by Rypel, A. et al., 2016. Seventy-Year Retrospective on Size-Structure Changes in the Recreational Fisheries of Wisconsin. Fisheries, 41, pp.230-243. Available at: http://afs.tandfonline.com/doi/abs/10.1080/03632415.2016.1160894
Long-term fish abundance data for Wisconsin Lakes Department of Natural Resources and North Temperate Lakes LTER 1944 - 2012 (Reformatted to the ecocomDP Design Pattern)
This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-ntl/356/3. The abstract below was extracted from the Level 0 data package and is included for context: This dataset describes long-term (1944-2012) variations in the relative abundance of fish populations representing nine species in Wisconsin lakes. Data were collected by Wisconsin Department of Natural Resource fisheries biologists as part of routine lake fisheries assessments. Individual survey methodologies varied over space and time and are described in more detail by Rypel, A. et al., 2016. Seventy-Year Retrospective on Size-Structure Changes in the Recreational Fisheries of Wisconsin. Fisheries, 41, pp.230-243. Available at: http://afs.tandfonline.com/doi/abs/10.1080/03632415.2016.1160894
Long-term fish size data for Wisconsin Lakes Department of Natural Resources and North Temperate Lakes LTER 1944 - 2012 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-ntl/345/4, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-ntl/357/2. The abstract below was extracted from the Level 0 data package and is included for context: This dataset describes long-term (1944-2012) variations in individual fish total lengths from Wisconsin lakes. The dataset includes information on 1.9 million individual fish, representing 19 species. Data were collected by Wisconsin Department of Natural Resource fisheries biologists as part of routine lake fisheries assessments. Individual survey methodologies varied over space and time and are described in more detail by Rypel, A. et al., 2016. Seventy-Year Retrospective on Size-Structure Changes in the Recreational Fisheries of Wisconsin. Fisheries, 41, pp.230-243. Available at: http://afs.tandfonline.com/doi/abs/10.1080/03632415.2016.1160894
Long-term Agricultural Experiments: Data Management Survey
<p>Results of an online survey used to guage views of researchers within the LTE community on data management issues and knowledge. The survey was broken down in to 4 main questions and can be found at the following link - further responses are still welcome: <a href="https://forms.office.com/e/8DmapwLRr8" target="_blank" rel="noopener">https://forms.office.com/e/8DmapwLRr8</a>.</p> <ul> <li>About your role</li> <li>Data management & sharing</li> <li>Describing LTEs and their data</li> <li>Challenges for data management & sharing </li> </ul> <p>At the time of publication, 55 responses had been recieved.</p> <p>The survey was developed in response to an LTE Conference Workshop held at Rothamsted Research, UK in June 2023.</p>
Long-term immunity against yellow fever in children vaccinated during infancy: a longitudinal cohort study
<p>The data represent the concentrations of specific neutralizing antibodies following infant immunization against yellow fever. We used a microneutralization assay to measure protective antibodies against yellow fever virus in 587 Malian and 436 Ghanaian children vaccinated around age 9 months, and followed for 4.5 years (Mali), or 2.5 and 6 years (Ghana). We standardized antibody concentrations with reference to the yellow fever WHO International Standard.</p> <p>The serum samples used in this study, and the sample metadata included in the present dataset originate from trials of the meningococcal group A conjugate vaccine, MenAfriVac, namely the PsATT-004 (phase II) and Pers-004 (phase IV) studies in Ghana, and the PsATT-007 (phase III) and Pers-007 (phase IV) studies in Mali (clinical trial registry numbers ISRCTN82484612, ISRCTN10763234, PACTR201110000328305, and ISRCTN37623829). MenAfriVac was developed by PATH and Serum Institute India Pvt. Ltd. (SIIPL).</p> <p>This dataset consists of three files:</p> <p>1. Ghana group data | Tab-delimited text file: Yellow_fever_nAb_Ghana.csv</p> <p>2. Mali group data | Tab-delimited text file: Yellow_fever_nAb_Mali.csv</p> <p>3. Data dictionary | PDF file: Yellow_fever_nAb_Data_Dictionary.pdf</p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p>
Long-term dynamics of tropical rain forests in permanent inventory plots, La Selva, Costa Rica (1969-1995)
Three permanent plots comprising a total of 12.4 ha were established in 1969 in tropical rain forest at La Selva Biological Station, near Puerto Viejo de Sarapiquí, in the Caribbean lowlands of Costa Rica. The plots were established in old-growth forest on three contrasting landforms: Plot 1 (4.4 ha) on old alluvial terrace; Plot 2 (4.0 ha) in swamp forest and rolling hills; and Plot 3 (4.0 ha) on steeply dissected terrain with residual soils. The data archived here include plot inventories carried out at five census dates over a period of 27 years. The inventory starting dates were 1969; 1982; 1985; 1989; and 1995. All stems 10 cm dbh or greater were tagged with a permanent numbered tag; measured in diameter at breast height and above buttresses to the nearest mm; mapped on the ground to the nearest m; and identified to species. At each census, live trees were re-measured, dead trees were recorded along with information on the manner of death, other details on the condition of the tree were noted, and new recruits were tagged, mapped, measured, and identified. The archived data include these five components: (1) The master data file, including comprehensive data on all tagged individuals in the three plots for the five censuses from 1969-1995. Each line in the data set represents an individual tagged tree or liana. The data array comprises 8689 lines (the number of tagged individuals) x 48 columns of data. The lines in the data set are ordered first by Plot number (1, 2, 3); next by subplot within each plot; and then by tag number within each subplot. (2) A list of column identifiers, describing in detail the information represented in each of the 48 columns within the master data file. The list gives a description of the data in each column, the units of measurement, and a guide to the interpretation of zeroes in the data. (3) A key to codes used in the field to describe the condition of individual trees. (4) A taxonomic reference list, including all species found
MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes, ongoing since 2005 (Reformatted to the ecocomDP Design Pattern)
This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-mcr/6/58. The abstract below was extracted from the Level 0 data package and is included for context: These data describe the species abundance and size distributions of fishes surveyed as part of MCR LTER's annual reef fish monitoring program. This study began in 2005 and the dataset is updated annually. The abundances of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a five by fifty meter transect which extends from the bottom to the surface of the water column are recorded by a diver using SCUBA. The diver then swims back along a one by fifty meter section of the original transect line and records the abundances of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids etc). Surveys are conducted between 0900 and 1600 hours (Moorea time) during late July or early August each year. In 2006, divers also began to estimate the size (length) of each fish observed to the nearest half cm. Four replicate transects are surveyed in each of six locations on the forereef (two on each of Moorea's three sides), six locations on the backreef (two on each of Moorea's three sides) and on six locations on the fringing reef (two on each of Moorea's three sides) for a total of 72 individual transects. Transects are permanently marked using a series of small, stainless steel posts affixed to the reef. Transects on the forereef are located at a depth of approximately 12m, those on the backreef are located at a depth of approximately 1.5m and those on the fringing reef are located at a depth of approximately 10m. In addition to the biotic data collected, divers also record data on the date and time each transect was surveyed,
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.