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2,031 results for “Transformer”
"Non facciamo la guerra, combattiamo i rifiuti!"_FishArt.Participatory Art for environmental sustainability and aesthetic transformation of Anzio Fishermen's Harbour
<p>FishArt is a 10-month international project funded by the New European Bahahus Cross-KIC Connect 2024 written by and granted to Chiara Certoma’ (UniTo – now at UniRm1) and led by Laura Corazza (UniTo), in collaboration with Raw-News, Platoon and the fishermen cooperatives of Anzio (Rome, Italy). FishArt promotes a radically participatory art and education process supporting the requalification of the Fishermen’s Harbour in the coastal city of Anzio, Italy.As part of the FishArt project agenda, transect walks and educational training initiatives have been combined in a major event, strongly requested by the local community. The synergy between local institutions and international research aims to stimulate civic participation on the problem of marine pollution and the care of the coastal territory.The event “Let’s not make war, let’s fight waste!” is a civic initiative promoted by the Extraordinary Commission supported by the Environment Area of the Municipality of Anzio which aims to involve all the components of civil society for a collaborative cleaning of the beaches, transforming the celebrations of the Anzio/Nettuno landing into a moment of sharing and to raise awareness against marine pollution.</p>
Research data: Continuity Amid Transformation: An Analysis of Pottery Production from the Late La Tène to Early Roman Periods in Eastern Bohemia
<p>Data used in the research presented in the article titled "Continuity Amid Transformation: An Analysis of Pottery Production from the Late La Tène to Early Roman Periods in Eastern Bohemia".</p> <p><strong>Abstract of the article:</strong></p> <p>At the end of the La Tène period and the beginning of the Roman period in the first century BC, society in Central Europe underwent a significant transformation, which included notable changes in pottery production. This transformation is often attributed to the collapse of the social structures of the La Tène period and the arrival of a new population. Pottery production, in particular, is generally considered to have undergone a complete transformation.</p> <p>However, previous studies on this transition have primarily focused on the stylistic analysis of shapes and decorations, as illustrated by the pottery assemblage from Slepotice (Eastern Bohemia). In order to obtain additional data on the transitional period, this study of pottery from Slepotice incorporates analyses of the materials used and the manufacturing process through macroscopic observation, X-ray fluorescence analysis, and thin-section analysis. These analyses provide new insights into the differences in pottery production and distribution during the first century BC.</p> <p>Our research indicates that while the transformation included the collapse of the La Tène socioeconomic network, it did not result in a complete break in the pottery production process.</p> <p>Link to the article: <a href="https://doi.org/10.1016/j.jasrep.2025.105073">https://doi.org/10.1016/j.jasrep.2025.105073</a></p> <p> </p> <p><strong>List of the files:</strong></p> <p>Supplementary Material 1<br>Settlement structure in the vicinity of Slepotice during the La Tène and Roman periods: 1 – Slepotice, 2 – České Lhotice, 3 – Brčekoly, 4 – Chrudim</p> <p>Supplementary Material 2<br>Values of pottery attributes (Mat, InMn, InVar, In, traces left from the shaping process, Po, Vy, and morphological groups) classified based on macroscopic observation</p> <p>Supplementary material 3<br>Schematic classification of rim attributes, illustrating different variants of rim direction (Op), thickening of the upper part of the rim (Oz), and trimming of the lip (Os)</p> <p>Supplementary material 4<br>Attributes of the 30 samples selected for XRF analysis based on macroscopic observation. These attributes include fabric properties, surface treatment, morphological features, and technological traces</p> <p>Supplementary material 5<br>Figures of ceramic samples (with corresponding IDs) from feature 144/1998 showing preserved rims and bases</p> <p>Supplementary material 6<br>Figures of ceramic samples (with corresponding IDs) from feature 355/2001 showing preserved rims</p> <p>Supplementary Material 7<br>Chemical composition of 30 selected samples according to XRF analysis (main oxides in wt%, and elements in ppm)</p> <p>Supplementary Material 8<br>Principal Component Analysis (PCA) results: The scree plot (top left) visualises the proportion of variance explained by each principal component. The biplots (top right and bottom right) illustrate the distribution of samples, with arrows indicating the contribution of specific elements to the observed variance. The dendrogram (bottom left) shows hierarchical clustering of the samples, aiding in the selection of representative samples for thin-section petrographic analysis</p> <p>Supplementary Material 9<br>Relationships between the dating and other attributes of pottery classified based on macroscopic observation. These attributes include fabric properties, surface treatment, morphological features, and technological traces</p> <p>Supplementary Material 10<br>Relationships between the chemical groups (determined by XRF analysis) and pottery attributes classified based on macroscopic observation. These attributes include fabric properties, surface treatment, morphological features, and technological traces</p> <p>Supplementary Material 11<br>Petrography of fabric groups and subgroups, focusing on their properties. The evaluation begins with a general assessment of each fabric group as a whole, followed by a detailed examination of its subgroups</p> <p>Supplementary Material 12<br>Petrographic characterization of ceramics using a semiquantitative scale, simplified for statistical analysis (0.1 – trace, 0.5 – rare, 1 – occasional, 2 – common, 3 – frequent, 4 – abundant, 5 – dominant)</p> <p>Supplementary Material 13<br>Thin-section samples: Description of the ceramic matrix, natural inclusions, and added tempers</p> <p>Supplementary material 14<br>Variations in chemical composition among different fabric groups</p>
Supporting Data for "Exploring ChatGPT-4 for Transforming Taxonomic Data into OWL: Lessons Learned and Implications for Ontology Development"
<p>Data from the trials with ChatGPT to generate OWL files for taxonomic data from the GBIF Backbone Taxonomy.</p> <p>Updates of version 2: additional prompts from the experiments with Gemini and DeepSeek.</p>
Transforming towards what? A review of futures thinking applied in the quest for navigating sustainability transformations
<p>This is the dataset used for the review article "Transforming towards what? A review of futures thinking applied in the quest for navigating sustainability transformations". The spreadsheet contains the bibliographic records and the data used and organized for its analysis. </p>
S68 | HSDBTPS | Transformation Products Extracted from HSDB Content in PubChem
<p>This is the collection associated with list S68 HSDBTPS Transformation Products Extracted from HSDB Content in PubChem on the NORMAN Suspect List Exchange.</p> <p><a href="https://www.norman-network.com/nds/SLE/">https://www.norman-network.com/nds/SLE/</a></p> <p>HSDBTPS is a list of metabolites / transformation products extracted from the "Metabolites/Metabolism" section from HSDB (Hazardous Substance Data Bank) in PubChem (<a href="https://pubchem.ncbi.nlm.nih.gov/source/11933">https://pubchem.ncbi.nlm.nih.gov/source/11933</a>). Dataset DOI: <a href="https://doi.org/10.5281/zenodo.3827487">10.5281/zenodo.3827487</a>.</p> <p>Entries automatically extracted from HSDB are manually validated to remove mismatching CIDs, and add additional CIDs not captured using the descriptions provided. Files are created with a default to not import any data until this has been checked. Please report any mismatches, despite best efforts it is possible that errors are present, all files are under version control so that entries can be corrected/updated/enhanced over time and recommitted.</p> <p>Recent uploads (2022 and later) are handled with ShinyTPs (<a href="https://gitlab.lcsb.uni.lu/eci/shinytps">code</a> + article from Palm et al 2023 DOI:<a href="https://doi.org/10.1021/acs.estlett.3c00537">10.1021/acs.estlett.3c00537</a>). The original code associated with this deposit is located <a href="https://gitlab.lcsb.uni.lu/eci/pubchem/-/tree/master/annotations/tps/">here</a>. </p> <p>Updates:</p> <p>16 May 2020: Added the source file (extract of all HSDB Metabolites/Metabolism entries as is from JSON file), plus an updated S68_HSDBTPS_StructInfoOnly.csv with one new structure and renamed to include S68, plus the first draft of the Transformations table. 28 May 2020: added InChIKey and DIXSID files. 11 June 2020: added updated Transformations and Structure files to contain new CIDs and resulting reactions from new PubChem registrations. Dec 23, 2022: first dataset from Emma Palm added, using her TP curation app. DTXSID file dropped. 23 Mar 2023: added Biosystem and Enzyme columns, filling in biosystem where appropriate. 24 Mar 2023: new azo dye reactions from Emma Palm added. 1 Apr 2023: more azo dye reactions from Emma Palm. 4 Apr 2023: added new CIDs. 27 June 2023: added many new substances, including new CIDs. 28 June 2023 added transformations, 30 June 2023 added new CIDs. 11 July added missing CIDs to transformations table. 18 Nov 2023: added new reactions from Jolly Komolo (no new CIDs). 1 Dec 2023: new reactions from Marie, incl. two new CIDs. 19 Dec 2023: new reactions from Marie, incl. 1 new CID, updated CIDs from Dec 1. 29 April 2024: new reactions from Marie, CID updated. 16 July 2024: added reactions from Olga. 26 July 2024: added BPA=>MBP. 6 Aug 2024: adjusted many triazine names, added one new reaction. 27 Nov 2024: added Griseofulvin reactions. 8 Feb 2025: added Sertraline TP. 14 Mar 2025: added missing CID for O-Demethyl phosphamidon.</p>
Supplementary material for Targeted gene knock-in reduces variation between transformants in the mushroom-forming fungus Schizophyllum commune
<p>Supplementary data for "Targeted gene knock-in reduces variation between transformants in the mushroom-forming fungus <em>Schizophyllum commune</em>"</p> <p>Dataset consists of fluorescent images of <em>S. commune</em> strains with an ectopic or targeted integration of <em>dTomato </em>under the control of the <em>tubulin </em>promoter and <em>hom2 </em>terminator and the obtained fluorescent intensity of each strain. For thesholding the mean intensity of all pixels above 14 (range 0, 255) was calculated.</p> <p>Files are names according to strain (E1-E12 for ectopic integrations and TI1-TI6 for targeted integrations and WT for wildtype) and replicate.</p>
Educational transformation and network learning dataset – qualitative data from an international collaborative EU-project
<p>We are releasing our dataset of workshop outcomes acquired from the annual consortium conferences organized by the international “NextFood” consortium. The purpose of this project is to develop new ways of educating the future sustainability leaders of the agrifood sector, making sure that the professionals (farmers, advisers, businesses, students) have the right set of skills and competences needed to tackle the sustainability challenges we face ahead. Data gathering started from May 2018 yielding considerable amount of data on achievements, challenges and action plans related to educational transformation. This dataset will be updated by the time of project finalization. This work was funded by the European Union, through the Horizon 2020 project “NextFood”, Grant agreement No. 771738.</p>
Relative abundance of the CHC extracts of each population replicate's of I. uriae ticks from Iceland after log centered ratio transformation
<p>Relative abundance of the CHC extracts of each population replicate’s of I. uriae ticks from Iceland after log centered ratio transformation.</p>
Fourier-transform Infrared (FT-IR) spectroscopy fingerprints subpopulations of extracellular vesicles of different sizes and cellular origin
<p>Atomic Force Microscopy images of Large (LEV), Medium (MEV) and Small (SEV) Extrzcellular vesicles (EVs) from murine cell line B16 (B16-F10, ATCC CRL-647; Mus musculus, mouse; tissue: melanoma skin). Image size 8.3 x 8.3 um. Analysis mode: Tapping mode in air as described in Paolini et al. https://doi.org/10.1080/20013078.2020.1741174</p>
Relocated Seismicity Catalogs on the Discovery Transform Fault, 4S on the East Pacific Rise
<p>Two relocated earthquake catalogs are provided for the Discovery Transform Fault located at 4ºS on the East Pacific Rise. There is a microseismicity catalog representing one year of activity recorded during a 2008 ocean bottom seismometer deployment, which includes 12,635 events with local magnitudes, M<sub>L</sub>, between 0 and 4.1. The second catalog includes 24 years (1 January 1990 - 1 April 2013) of earthquakes obtained from the global Centroid Moment Tensor (CMT) catalog, a total of 15 events, with seismic moment magnitudes, M<sub>W</sub>, between 5.4 and 6.0.</p> <p>Microseismicity was relocated using the HypoDD relocation algorithm (Waldhauser, 2001), while the CMT events were relocated using a teleseismic surface-wave cross-correlation technique (McGuire, 2008). The 15 CMT events all relocated into one of five distinct rupture patches on the Discovery Transform Fault. In general, microseismicity was found to be reduced within these large, repeating rupture patches.</p> <p>A more detailed description of the methodology used to relocate both catalogs, as well as a discussion on the correlation between seismic behavior and fault structure on the Discovery Transform Fault is provided in:</p> <p>Wolfson-Schwehr, M., Boettcher, M. S., McGuire, J. J., & Collins, J. A. (2014). The relationship between seismicity and fault structure on the Discovery transform fault, East Pacific Rise. <em>Geochemistry, Geophysics, Geosystems, </em>15(9), 3698–3712. <a href="https://doi.org/10.1002/2014GC005445">https://doi.org/10.1002/2014GC005445</a></p> <p>Seismic Catalogs:</p> <ul> <li>Discovery_CMT_relocated_seismicity_1990_2013.csv</li> <li>Discovery_relocated_microseismicity_2008.csv</li> </ul> <p>Additional References:</p> <p>1. McGuire, J. J. (2008). Seismic cycles and earthquake predictability on East Pacific Rise transform faults. <em>Bulletin of the Seismological Society of America</em>, 98(3), 1067-1084. <a href="https://www.whoi.edu/cms/files/McGuire_BSSA_2008_48643.pdf">https://www.whoi.edu/cms/files/McGuire_BSSA_2008_48643.pdf</a></p> <p>2. Waldhauser, F. (2001). hypoDD--A program to compute double-difference hypocenter locations. <br> <a href="https://academiccommons.columbia.edu/doi/10.7916/D8SN072H">https://academiccommons.columbia.edu/doi/10.7916/D8SN072H</a></p>
Replication Data for: Geometric Transformers for Protein Interface Contact Prediction
<p>This dataset contains replication data for the paper titled "Geometric Transformers for Protein Interface Contact Prediction". The dataset consists of pickled Python dictionaries containing pairs of DGLGraphs that can be used to train and validate protein interface contact prediction models. It also contains our best model checkpoints saved as PyTorch LightningModules. Our GitHub repository, DeepInteract, linked in the "Additional notes" metadata section below provides more details on how we use these files as examples for cross-validation.</p>
Supplementary Material for "'A Certain Enemy Robbed Me of My Life': Medieval Riddles, Digital Transformations, and Pandemic Pedagogy"
<p>Assignment, games, and illustrations associated with "'A Certain Enemy Robbed Me of My Life': Medieval Riddles, Digital Transformations, and Pandemic Pedagogy"</p>
Nonlinear spectral analysis of ion acoustic solitons arising from a streaming charged object using the numerical inverse scattering transform data
<p>Data files used in the publication: "Nonlinear spectral analysis of ion acoustic solitons arising from a streaming charged object using the numerical inverse scattering transform", submitted to Physics of Plasma August 2022. To be used in conjunction with analysis software KVIST.</p> <p>KVIST can be found at:</p> <ul> <li>https://doi.org/10.5281/zenodo.7017043</li> <li>https://github.com/Planetary-Surfaces-and-Spacecraft-Lab/KVIST</li> </ul> <p>Data files generated with:</p> <p>Truitt, A. (2020). Simulation of Forced Korteweg De Vries Equation as Applied to Small Orbital Debris. Digital Repository at the University of Maryland. https://doi.org/10.13016/FOR0-XJYD</p>
Optical tweezer platform for the characterization of pH-triggered colloidal transformations in the oleic acid/water system
<p>Hypothesis: Soft colloidal particles that respond to their environment have innovative potential for many fields ranging from food and health to biotechnology and oil recovery. The in situ characterisation of colloidal transformations that triggers the functional response remain a challenge.</p> <p>Experiments: This study demonstrates the combination of an optical <a href="https://www.sciencedirect.com/topics/physics-and-astronomy/micromanipulation">micromanipulation</a> platform, polarized optical video microscopy and <a href="https://www.sciencedirect.com/topics/physics-and-astronomy/microfluidics">microfluidics</a> in a comprehensive approach for the analysis of pH-driven structural transformations in emulsions. The new platform, together with <a href="https://www.sciencedirect.com/topics/physics-and-astronomy/synchrotron">synchrotron</a> small angle X-ray scattering, was then applied to research the food-relevant, pH-responsive, <a href="https://www.sciencedirect.com/topics/chemistry/oleic-acid">oleic acid</a> in water system.</p> <p>Findings: The experiments demonstrate structural transformations in individual oleic acid particles from micron-sized onion-type multilamellar oleic acid vesicles at pH 8.6, to nanostructured emulsions at pH < 8.0, and eventually oil droplets at pH < 6.5. The smooth particle-water interface of the onion-type vesicles at pH 8.6 was transformed into a rough particle surface at pH below 7.5. The pH-triggered changes of the interfacial tension at the droplet-water interface together with mass transport owing to structural transformations induced a self-propelled motion of the particle. The results of this study contribute to the fundamental understanding of the structure–property relationship in pH-responsive emulsions for nutrient and drug delivery applications.</p>
A private house in 'Marea'/Philoxenite transformed into a monastic institution and other Christian hybrid buildings in the Mareotis region - additional illustrations
<p>Set of three documents on potsherds (ostraca) has been found in Philoxenite (Egypt). All three of the ostraca, M200249 (= Document A), M200250 (= Document B), and M200251 (= Document C) are preserved in their entirety, in the sense that the sherds, meant to serve as the canvas for the documents, were not broken when they were thrown out into the rubbish pit in the piscina.</p> <p>The photos uploaded here provide supplementary material for an article discussing the content of these ostraca. </p> <p> </p>
Diffuse reflectance spectra of coated plates and corresponding plots transformed Kubelka-Munk function versus the energy of light (eV)
<p>The link contains UV-DRS results of TiO<sub>2</sub>/Fe<sub>2</sub>O<sub>3</sub> layered composites (from commercial nanoparticles) and corresponding bandgap energies</p>
Data supporting "Transformer Model Generated Bacteriophage Genomes are Compositionally Distinct from Natural Sequences"
<p>Sequence and composition data supporting doi: <a href="https://doi.org/10.1101/2024.03.19.585716" target="_blank" rel="noopener">10.1101/2024.03.19.585716</a>. Uncompressed file size is ~5.8GB.</p> <p>Data in zip files is organized by sequence provenance (generRNA, natural, or transformer (megaDNA)). Common file types between folders include:</p> <ul> <li>Multi-record fasta file: Sequence data for all sequences of a given provenance. For generRNA sequences, these are found within the `seq` column of file "MFE_distribution_Fig4a.csv"</li> <li>Composition files: Individual sequence level compositional metrics for sliding 120 bp windows. Only structural metrics were used in this study.</li> <li>Genomad: Results from the genomad pipeline (https://portal.nersc.gov/genomad/)</li> <li>Stats: Aggregate statistics for all sequences of a given provenance.</li> </ul> <p>The natural folder also has a metadata file detailing the taxonomy for all natural sequences.<br><br>Figure datasets are the cleaned (sometimes aggregated) datasets that underly specific figures in the manuscript. The figure designations are based on the order in: https://www.biorxiv.org/content/10.1101/2024.03.19.585716v1.</p>
AdsMT: Multi-modal Transformer for Predicting Global Minimum Adsorption Energy
<p>We built three Global Minimum Adsorption Energy (GMAE) benchmark datasets named OCD-GMAE, Alloy-GMAE and FG-GMAE from OC20-Dense, Catalysis Hub, and `functional groups' (FG)-dataset datasets through strict data cleaning, and each data point represents a unique combination of catalyst surface and adsorbate. These new benchmark datasets can be beneficial for future ML study on GMAE prediction.</p> <p>In addition, a similar data cleaning procedure was employed on the OC20 dataset to create a new dataset named OC20-LMAE, which comprises surface/adsorbate pairings along with their local minimum adsorption energies (LMAE). The OC20-LMAE dataset contains 363,937 data points and serves as an effective resource for model pretraining.</p>
Web-based Editor for Entity-Relationship Modeling with SQL Transformation Algorithm
<p>With the daily growth of data in all kinds of sectors, such as <span>Information Technolo</span><span>gies (IT)</span>, healthcare, education, commerce or telecommunication, it becomes important to use a high-performance system to manage all this data in the best possible way. Indeed, in the absence of good data management, it can be difficult for these sectors to prevent data loss, ensure safe maintenance or guarantee data security. For this reason, an effective data management system is the Entity-Relationship model. Indeed, thanks to this model, all kinds of sectors have the possibility of designing and organizing their data in relational databases, thus improving data security and better internal communication. Furthermore, it is interesting to modernize the classic approach of the Entity-Relationship model and its visual representations of data in the present day. The technologies of Augmented and Virtual Reality respond precisely to this challenge of innovation in the Entity-Relationship model. Therefore, the first objective of this thesis is to implement the Entity-Relationship model in a Meta-Modeling Platform for Augmented and Virtual Reality. The second objective is to implement an algorithm that transforms an Entity-Relationship model into SQL statements to create database tables. The Entity-Relationship model is used to design the logic of a database, and the implementation of the algorithm is used to create the database.</p>
RetroTransformDB - a dataset of transforms (retrosynthetic reactions)
<p>Here we present a dataset of transforms compiled and coded in SMIRKS line notation by us. The collection is comprised of more than 100 records each including id, reactions name, SMIRKS linear notation, target functional group and transform type. All SMIRKS transforms were tested syntactically, semantically and from chemical point of view in different software platforms. SMIRKS notations are written with explicit H atoms, therefore it is expected that the used software will apply the SMIRKS transforms against molecules with explicit H atoms.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.