Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
156
datasets available to search
ShareScore release 0.7.1
Dataset results
156 results for “biotic interactions”
Fig. 5 in Biotic interaction between spionid polychaetes and bouchardiid brachiopods: Paleoecological, taphonomic and evolutionary implications
Fig. 5. Spionid polychaete Polydora sp. found in association with Bouchardia rosea shells, Ubatuba Bight, 10 and 20 m depth. Specimen DZP−18668. A, B. Anterior segments of Polydora showing the characteristic modified chaetae (arrows) in its 5th segment. C. Polydora hooks (arrow) from the median segments. D. Posterior segments of Polydora showing the flanged pygidium (arrow). Scale bars 100 µm.
Fig. 3 in Biotic interaction between spionid polychaetes and bouchardiid brachiopods: Paleoecological, taphonomic and evolutionary implications
Fig. 3. General shell morphology of bouchardiid brachiopods. A–C. Bouchardia rosea (Mawe, 1823) from modern accumulations from the Ubatuba coast, State of São Paulo, Brazil. A. Specimen DZP−18669. B. Specimen DZP−18670. C. Specimen DZP−18671. D–F. Bouchardia transplatina Ihering, 1907 from the Cerro Bautista locality, the Camacho Formation, Late Miocene, Uruguay. D. Specimen FCDP−2305E. E. Specimen FCDP−2305G. F. Specimen FCDP−2305K. G–I. Bouchardia zitteli Ihering, 1897 from the Manantial Salado locality, the San Julian Formation, Late Oligocene, Argentina. G. Specimen IGC−DPE−855D. H. Specimen IGC−DPE−865H. I. Specimen IGC−DPE−865N. Scale bars 5 mm.
Data & R code for: Paquette & Hargreaves 'Biotic interactions are more often important at species' warm vs. cool range edges'
<p>Predicting which ecological factors constrain species distributions is a fundamental ecological question and critical to forecasting geographic responses to global change. Darwin hypothesized that abiotic factors generally impose species' high-latitude and high-elevation (typically cool) range limits, whereas biotic interactions more often impose species' low-latitude/low-elevation (typically warm) limits, but empirical support has been mixed. Here, we clarify three predictions arising from Darwin's hypothesis, and show that previously mixed support is partially due to researchers testing different predictions. Using a comprehensive literature review (885 range limits), we find that biotic interactions, including competition, predation, and parasitism, contributed to >60% of range limits, and influenced species' warm limits more often than cool limits. Abiotic factors contributed more often than biotic interactions to cool range limits, but temperature contributed frequently to both cool and warm limits. Our results suggest that most range limits will be sensitive to climate warming, but warm-limit responses will depend strongly on biotic interactions.</p>
Climate or diet? The importance of biotic interactions in determining species range size
<p><strong>Aim</strong>: Species geographical range sizes play a crucial role in determining species vulnerability to extinction. Although several mechanisms affect range sizes, the number of biotic interactions and species climatic tolerance are often thought to play discernible roles, defining two dimensions of the Hutchinsonian niche. Yet, the relative importance of the trophic and the climatic niche for determining species range sizes is largely unknown.<br><br><strong>Location</strong>: Central and Northern Europe<br><strong>Time period</strong>: Present<br><strong>Major taxa studied</strong>: Gall-inducing sawflies and their parasitoids<br><br><strong>Methods</strong>: We use data documenting the spatial distributions and biotic interactions of 96 herbivore species, and their 125 parasitoids, across Europe and analyse the relationship between species range size and the climatic and trophic dimensions of the niche. We then compare the observed relationships with null expectations based on species occupancy to understand whether the relationships observed are an inevitable consequence of species range size or if they contain information about the importance of each dimension of the niche on species range size.<br><br><strong>Results</strong>: We find that both niche dimensions are positively correlated with species range size, with larger ranges being associated with wider climatic tolerances and larger numbers of interactions. However, diet breadth appears to more strongly limit species range size. Species with larger ranges have more interactions locally and they are also able to interact with a larger diversity of species across sites (i.e. higher beta-diversity), resulting in a larger number of interactions at continental scales.<br><br><strong>Main conclusions</strong>: We show for the first time how different aspects of species diet niche are related to their range size. Our study offers new insight into the importance of biotic interactions in determining species spatial distributions, which is critical for improving understanding and predictions of species vulnerability to extinction under the current rates of global environmental change.</p>
Implementation of biotic interactions in niche analyses unravels the patterns underneath community composition in clownfishes
<p><span>Biotic interactions are key to understanding the ecology of species and communities. As such, integrating biotic interactions into ecological niche modelling methods has been a central topic of research for the last decade. Yet, the role of biotic interactions remains overlooked. Mutualistic systems constitute perfect study cases for analysing the effect of biotic interactions on species niches and</span><span> comm</span><span>unities' </span><span>composition. Using the clownfish-sea anemone interaction, we integrate mutualistic interactions into a niche quantification framework to analyse the effect of biotic interactions in the estimation of species niches, and competition patterns among clownfish communities. Our results show that ignoring biotic interactions can strongly affect species' ecological niche estimations. More importantly, sea anemones seem to mediate competition among clownfishes, structure communities and allow coexistence in competitive environments. These findings strongly support the importance of biotic interactions in shaping communities. Future studies could use the proposed analytical framework, which could also serve multiple conservation purposes.</span></p>
Host-enemy interactions provide limited biotic resistance for a range-expanding species via reduced apparent competition
<p class="MsoNormal"><strong><span>Aim:</span></strong><span> As species' ranges shift poleward in response to anthropogenic change, they may lose antagonistic interactions if they move into less diverse communities, fail to interact with novel populations or species effectively, or if ancestral interacting populations or species fail to shift synchronously. We leveraged a poleward range expansion in a tractable insect host-enemy community to uncover mechanisms by which altered antagonistic interactions between native and recipient communities contributed to "high niche opportunities" (limited biotic resistance) for a range-expanding insect. </span></p> <p class="MsoNormal"><strong><span>Location:</span></strong><span> North America, Pacific Northwest</span></p> <p class="MsoNormal"><strong><span>Methods:</span></strong><span> We created quantitative insect host-enemy interaction networks by sampling oak gall wasps on 400 trees of a dominant oak species in the native and expanded range of a range-expanding gall wasp species. We compared host-enemy network structure between regions. We measured traits (phenology, morphology) of galls and interacting parasitoids, predicting greater trait divergence in the expanded range. We measured function relating to host control and explored if altered interactions and traits contributed to reduced function or biotic resistance.</span></p> <p class="MsoNormal"><strong><span>Results:</span></strong><span> Interaction networks had fewer species in the expanded range and lower complementarity of parasitoid assemblages among host species. While networks were more generalized, interactions with the range-expanding species were more specialized in the expanded range. Specialist enemies effectively tracked the range-expanding host, and there was reduced apparent competition with co-occurring hosts by shared generalist enemies. Phenological divergence of enemy assemblages interacting with the range-expanding and co-occurring hosts was greater in the expanded range, potentially contributing to weak apparent competition. Biotic resistance was lower in the expanded range, where fewer parasitoids emerged from galls of the range-expanding host.</span></p> <p class="MsoNormal"><strong><span>Main conclusions:</span></strong><span> Changes in interactions with generalist enemies created high niche opportunities, and limited biotic resistance, suggesting weak apparent competition may be a mechanism of enemy release for range-expanding insects embedded within generalist enemy networks.</span></p>
Data from: Biodiversity forecasting in natural plankton communities reveals temperature and biotic interactions as key predictors
Open the record for dataset details and reuse information.
Integrating biotic interactions in niche analyses unravels patterns of community composition in clownfishes
Open the record for dataset details and reuse information.
Climate or diet? The importance of biotic interactions in determining species range size
Open the record for dataset details and reuse information.
Zooplankton recovery from a whole‐lake disturbance: Examining roles of abiotic factors, biotic interactions, and traits
Open the record for dataset details and reuse information.
Data from: Biotic interactions help explain variation in elevational range limits of birds among Bornean mountains
Open the record for dataset details and reuse information.
Data from: The importance of biotic interactions in distribution models of wild bees depends on the type of ecological relations, spatial scale and range
Open the record for dataset details and reuse information.
Data & R code for: Paquette & Hargreaves 'Biotic interactions are more often important at species' warm vs. cool range edges'
Open the record for dataset details and reuse information.
Biotic interactions promote local adaptation to soil in plants - Supplementary data
Open the record for dataset details and reuse information.
Host-enemy interactions provide limited biotic resistance for a range-expanding species via reduced apparent competition
Open the record for dataset details and reuse information.
Data for Context-dependent biotic interactions control plant abundance across altitudinal environmental gradients, 2014, 2016, Colorado, USA
Many biotic interactions influence community structure, yet most distribution models for plants have focused on plant competition or used only abiotic variables to predict plant abundance. Furthermore, biotic interactions are commonly context-dependent across abiotic gradients. For example, plant-plant interactions can grade from competition to facilitation over temperature gradients. We used a hierarchical Bayesian framework to predict the abundances of 12 plant species across a mountain landscape and test hypotheses on the context-dependency of biotic interactions over abiotic gradients. We combined field-based estimates of six biotic interactions (foliar herbivory and pathogen damage, fungal root colonization, fossorial mammal disturbance, plant cover, and plant diversity) with abiotic data on climate and soil depth, nutrients, and moisture. All biotic interactions were significantly context-dependent along temperature gradients. Results supported the stress gradient hypothesis: As abiotic stress increased, the strength or direction of the relationship between biotic variables and plant abundance generally switched from negative (suggesting suppressed plant abundance) to positive (suggesting facilitation/mutualism). For half of the species, plant cover was the best predictor of abundance, suggesting that the prior focus on plant-plant interactions is well-justified. Explicitly incorporating the context-dependency of biotic interactions generated novel hypotheses about drivers of plant abundance across abiotic gradients and may improve the accuracy of niche models.
Trade-offs between seed size and biotic interactions contribute to coexistence of co-occurring species that vary in fecundity
<p>Despite theoretical advances, the ecological factors and functional traits that enable species varying in seed size and fecundity to coexist remain unclear. Given inherent fecundity advantages, why don't small-seeded species dominate communities?</p> <p>In perennial grasslands, we evaluated whether small-seeded species are less tolerant of competition from the community dominant bunchgrass than large-seeded species but also less vulnerable to seed predation by mice. We also explored whether trade-offs involving competitive tolerance include two other functional traits, height and leaf mass per area (LMA). We added seeds of 17 forb species to plots where bunchgrass competition and rodent seed predation were manipulated across sites varying in bunchgrass productivity and thus competitive intensity. Seeds were added at densities mimicking interspecific variation in fecundity among target species.</p> <p>Standardizing for differences in fecundity (i.e. seed input; which enabled us to evaluate inherent interspecific differences in susceptibility to biotic interactions), bunchgrass competition more greatly reduced recruitment and establishment of small vs. large-seeded species, whereas rodent seed predation more greatly reduced the recruitment of large- versus small-seeded species. Plant height and LMA were unrelated to the competition effect size.</p> <p>Small-seeded species abundance decreased across sites increasing in bunchgrass productivity, whereas this was not the case for large-seeded species. For adult plants but not seedlings, community weighted functional trait means (CWM) for seed size, height, and LMA increased in plots with versus without bunchgrass competition and the CWM for seed size and height also increased at sites with greater bunchgrass productivity (for adults only). In contrast, rodent seed predation had no significant effects on CWM seed size.</p> <p>At the end of the experiment, adult abundance positively correlated with plant fecundity in plots lacking bunchgrass, indicating the inherent advantages accrued to high fecundity small-seeded species. However, with bunchgrass competition, abundances were equalized across species due to reduced competitive tolerance of high fecundity small-seeded species.</p> <p>Synthesis: Our results suggest that coexistence among subordinate forb species varying in seed size and fecundity is in-part due to a trade-off involving competitive tolerance and fecundity, mediated by seed size and associated functional traits.</p>
Climate change drives spatial mismatch and threatens the biotic interactions of the Brazil nut tree
<p>Aim: Climate change and deforestation will redistribute the biodiversity in the next century. Species-specific differences in the response to such stressors will lead to distribution decoupling of interacting species, yet consequences for ecosystem services are poorly known. Here, we assess the potential effects of future niche mismatch on a key ecosystem service mediated by seed dispersal and pollination interactions in the Amazon: the sustainable exploitation of Brazil nuts.</p> <p>Location: The Amazon. Major taxa studied: Woody plant, medium-sized mammals, and insects.</p> <p>Time period: Present day, end of the 21st Century.</p> <p>Methods: Combining ecological niche models to simulations of tree cover loss and dispersal constraints, we compare the forecasted distribution of the plant to that of its interacting fauna of pollinators and seed dispersers.</p> <p>Results: Our projections indicate that climate change itself could have no or slightly negative effects on the distribution of the Brazil nut tree, expected to increase by 6% by year 2090. However, range contractions of nearly half of all the suitable climate for pollinators may lead up to 80% reduction on co-occurrence potential. In addition, local pollinator richness is expected to reduce by 20%, with likely consequences for pollination redundancy and resilience to subsequent environment changes. Although reductions on the suitable area of some seed dispersers were also forecasted in the future, potential co-occurrence with the plant and local species richness were mostly unabated in most of our projections.</p> <p>Main conclusion: The forecasted declines in pollinator diversity may hamper ecosystem function redundancy and threaten the long-term resilience of the services provided by Brazil nut trees. Such pervasive and indirect effects of climate change, often neglected and unaccounted for in most conservation assessments, may cascade into economies and human well-being worldwide.</p>
The biotic interactions hypothesis partially explains bird species turnover along a lowland Neotropical precipitation gradient
<p><span><span><span><span><span><span><span><span><span><span><span><b>Aim</b></span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span>We evaluated the influence of climate in determining bird communities along precipitation gradients. We argue that mechanisms responsible for community turnover along precipitation gradients are similar to mechanisms operating along temperature and latitudinal gradients. We test the hypothesis that environmental conditions affect community composition in dry forests, whereas biotic interactions affect community composition in wet forests.</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><b>Location</b></span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span>Low-elevation forests along a precipitation gradient in Colombia where precipitation ranges from 700 – 4000 mm annually but neither temperature or elevation change.</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><b>Time period</b></span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span>Present day</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><b>Major Taxa Studied</b></span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span>Tropical Forest Birds.</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><b>Methods</b></span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span>We performed 291 bird counts in nine study areas across the ~3000 mm range of variation in precipitation. In each locality we obtained climatic characteristics, and a phylogenetic, morphological and physiological proxy data set to test predictions about the evolutionary relationships and distribution of traits in each community. </span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><b>Results</b></span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span>Bird communities changed abruptly along the precipitation gradient and could be divided into dry and wet forest communities. Analyses of phylogenetic relationships, trait space, and observations at nests suggested that environmental filtering is more important in dry forest, especially for breeding. In contrast, we found little evidence that competition was more important in wet forest. Nest predation or competition for nest space, however, may be more critical in wetter forests.</span></span></span></span></span></span></span></span></span></span></span></p> <p class="author"><span><span><span><span><span><span><span><span><span><span><span><b>Conclusions</b></span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span>The two distinct bird communities we documented suggest that lowland precipitation gradients, where temperature is constant can be as important as temperature gradients in generating high beta diversity. We conclude that the breeding process in bird communities might be crucial for determining community assembly along environmental gradients. Given that recent population declines in tropical birds have been attributed to changes in precipitation, by understanding the mechanisms underlying community assembly along precipitation gradients our study may improve our ability to understand those declines and predict the effects of climate change on neotropical avifauna.</span></span></span></span></span></span></span></span></span></span></span></p>
Local adaptation to biotic interactions: a meta-analysis across latitudes
<p>Adaptation to local conditions can increase species' geographic distributions and rates of diversification, but which components of the environment commonly drive local adaptation—particularly the importance of biotic interactions—is unclear. Biotic interactions should drive local adaptation when they impose consistent divergent selection; if this is common we expect transplant experiments to detect more frequent and stronger local adaptation when biotic interactions are left intact. We tested this hypothesis using a meta-analysis of transplant experiments from >125 studies (mostly on plants). Overall, local adaptation was common and biotic interactions affected fitness. Nevertheless, local adaptation was neither more common nor stronger when biotic interactions were left intact, either between experimental treatments within studies (control vs. biotic interactions experimentally manipulated) or between studies that used natural vs. biotically-altered transplant environments. However, the effect of ameliorating negative interactions varied with latitude, suggesting that interactions may promote local adaptation more often in tropical vs. temperate ecosystems, though few tropical studies were available to test this. Our results suggest that biotic interactions often fail to drive local adaptation even though they strongly affect fitness, perhaps because temperate biotic environments are unpredictable at the spatiotemporal scales required for local adaptation.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.