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FIGURE 7 in Comparison between Atlantic salmon Salmo salar post-smolts reared in open sea cages and in the Preline raceway semi-closed containment aquaculture system

FIGURE 7 Mean (S.E.; n = 30) relative gene transcription values for (a) Igf-I () Reference, and () Preline, (b) igf1ra () Reference, and () Preline, and (c) igf1bp1a () Reference, and () Preline using ef1α as standard in Salmo salar muscle, both in fresh water and during rearing in Preline semiclosed containment system (S-CCS;) and reference group (). Significant differences through time are denoted with capital letters within the reference group and lower-case letters within Preline S-CCS. SW, seawater

FIGURE 3 in Comparison between Atlantic salmon Salmo salar post-smolts reared in open sea cages and in the Preline raceway semi-closed containment aquaculture system

FIGURE 3 Mean [S.E.; n = 30; (a), (c), (d)] Salmo salar growth in mass (M) fork length (LF) and Fulton's condition factor (K) measured in freshwater (15 April 2016) and during the post-smolt phase (1–2 June; 1–2 June and 29–30 August 2016) (a) Measured mass () Preline, and () Reference, (b) estimated mean mass (Fishtalk calculations, CEF = 1.1) () Reference, and () Preline, (c) mean fork length () Preline, and () Reference and (d) condition factor (K) () Preline, and () Reference. Estimated mean mass covers both the post-smolt phase 5 May to 30 August, and the growth phase 31 August to 30 November. Changeover is indicated with a dot in the figure. SW, seawater. Significant difference between groups; *p <0.05; ***p <0.001

FIGURE 4 in Comparison between Atlantic salmon Salmo salar post-smolts reared in open sea cages and in the Preline raceway semi-closed containment aquaculture system

FIGURE 4 Accumulated mortality of Salmo salar in the Preline semiclosed containment system (S-CCS) 30 April to 30 August followed by the open pen growth phase (Buholmen) from 1 September to 30 November (;, changeover from S-CCS to open pen). The accumulated mortality in the reference group covers the period 5 May to 30 November ()

FIGURE 5 in Comparison between Atlantic salmon Salmo salar post-smolts reared in open sea cages and in the Preline raceway semi-closed containment aquaculture system

FIGURE 5 Mean (+S.E.) Salmo salar skeletal muscle fibre diameter frequency distribution reared in Preline semi-closed containment system () and reference S. salar () after 4 months in seawater. Significant difference between groups; *p <0.05; ***p <0.001

FIGURE 2 in Comparison between Atlantic salmon Salmo salar post-smolts reared in open sea cages and in the Preline raceway semi-closed containment aquaculture system

FIGURE 2 (a) Alternate day mean water temperature and (b) salinity at the Salmo salar post- smolt Preline semi-closed containment system () and reference group () rearing systems between 5 May and 30 November 2016. Data from Preline S-CCS represents the Buholmen open-pen between 31 August and 30 November 2016

FIGURE 1 in Comparison between Atlantic salmon Salmo salar post-smolts reared in open sea cages and in the Preline raceway semi-closed containment aquaculture system

FIGURE 1 (a) Location of experiment area in Norway and (b) locations of the Preline semi-closed containment system (S-CCS), reference, freshwater and growing phase groups of Salmo salar post-smolts in Hordaland region; (c) schematic of the S-CCS; (d) standard open sea cages for S. salar production in Norway; (e) drawing of an open conical pen used to hold the reference group of fish

FIGURE 6 in Comparison between Atlantic salmon Salmo salar post-smolts reared in open sea cages and in the Preline raceway semi-closed containment aquaculture system

FIGURE 6 Mean (S.E.; n = 30) plasma IGF-I concentration of Salmo salar in both fresh water and during rearing in Preline S- semi-closed containment system (S-CCS;) and reference group (). Significant differences trough time are denoted with capital letters within the reference group, lower-case letters within the Preline S-CCS group and significant differences between rearing systems are shown: **p <0.01; ***p <0.001. SW, seawater

Fig. 4 in Growing, losing or introducing? Cage aquaculture as a vector for the introduction of non-native fish in Furnas Reservoir, Minas Gerais, Brazil

Fig. 4. Main events along the production system (i.e. juvenile stocking, length classification and fish capture) and the moments in which escapes occur (solid arrows: AC = accidental; IN = intentional). S = small-sized fish; M = mediumsized; L = large-sized.

Fig. 2 in Growing, losing or introducing? Cage aquaculture as a vector for the introduction of non-native fish in Furnas Reservoir, Minas Gerais, Brazil

Fig. 2. Frequency of fish farmers (%) operating different number of cages in Furnas Reservoir (n = 19).

Fig. 3 in Growing, losing or introducing? Cage aquaculture as a vector for the introduction of non-native fish in Furnas Reservoir, Minas Gerais, Brazil

Fig. 3. Frequency of fish farmers (%) reporting the occurrence of fish escapes during different events of the production chain (n = 19). Accidental: length classification (LC); fish removal (FR); juvenile stocking (JS); cage damage (CD). Deliberate: intentional releases (IR).

Fig. 1 in Growing, losing or introducing? Cage aquaculture as a vector for the introduction of non-native fish in Furnas Reservoir, Minas Gerais, Brazil

Fig. 1. Furnas Reservoir, Minas Gerais, Brazil. The circle indicates the study area (Carmo do Rio Claro town).

opencc-by-4.0Dec 2021View details →

Age, sex, length (mm), weight (g), and plasma sex steroid concentrations (ng/ml) of greater amberjack Seriola dumerili reared in sea cages during the process of sex differentiation

The dataset contains an excel file with the age, sex, total length (mm), wet weight (g) and plasma concentrations (ng/ml) of the following sex steroids, measured with the use of liquid chromatography/tandem mass spectrometry (LC-MS/MS): adrenosterone (Ad), androstenedione (Δ4), 11-ketotestosterone (11ΚΤ), testosterone (Τ), estradiol (Ε2), progesterone (P4) and 17,20β-dihydroxy-4-pregnen-3-one (17,20βP).

opencc-by-4.0Mar 2022View details →

Data for the paper "Determining the value of preferred goods based on consumer demand in a home-cage based test for mice"

All data related to the paper "Determining the value of preferred goods based on consumer demand in a home-cage based test for mice" will be made available to the scientific public here. The paper will be published soon in Behavioral Research Methods.

Aggregated frequencies of transcription initiations observed in FANTOM5 CAGE data on GRCh38, including alignments with low mapping qualities

Overview Aligned reads of the FANTOM5 CAGE data have been used after filtering (ones with mapping quality less than 20 or percent identity less than 85% were discarded) for general purpose, resulting in the data set consisting of only the reads aligned with confidence. The filtering process made possible to interpret the data without ambiguity, however it also limited interpretation of paralogous or duplicated regions within the genome. Here all of the 5'-ends of the CAGE read alignments, including the ones with low mapping quality, were counted. The counts in the individual profiles were aggregated and summed up.    Special usage note As noted above, this data derived from the alignments with low mapping qualities, as well as the ones with high mapping qualities. The result has to be examined very carefully: observations on the genome does not support transcription initiation with confidence, and even absence of such observation does not support silence of transcription with confidence. For example, file size on the forward strand is substantially larger than the one on the reverse strand, which is likely caused by an arbitrary preference of the alignment process. It does not mean transcription happens more frequently on the forward strand. Interpretation has to be made always in comparison with the standard data (BED files under http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v4/basic/ or bigWig files under http://fantom.gsc.riken.jp/5/datahub/hg38/reads/).   Data files The resulting data files are formatted as bigWig (https://genome.ucsc.edu/FAQ/FAQformat.html#format6.1). '*.fwd.bw' and '*.rev.bw' represent forward and reverse strand on the genome, respectively.    Methods The BAM files under http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v4/basic/ were subjected to 5'-end counting by bedtools v2.27.1 (https://github.com/arq5x/bedtools2), followed by conversion into bigWig with jksrc v357 (http://hgdownload.cse.ucsc.edu/admin/).

opencc-by-4.0Nov 2018View details →

Research raw data supporting "Activatable cell-biomaterial interfacing with photo-caged peptides"

Raw data supporting the publication; Lin Y. et al., Activatable cell-biomaterial interfacing with photo-caged peptides, 2018, Chemical Science, DOI: 10.1039/c8sc04725a.

opencc-by-4.0Apr 2019View details →

AEROARMS - Image Dataset for the Crawler Indirect Detection through its Cage

Dataset containing images and ground-truth position of the crawler's cage used in the AEROARMS project experiments.

Fig. 5 in Parasitic development in intestines and oocyst shedding patterns for infection by Eimeria uekii and Eimeria raichoi in Japanese rock ptarmigans, Lagopus muta japonica, protected by cages in the Southern Japanese Alps

Fig. 5. Eimeria oocysts (E. uekii) isolated from soil inside the cage (cage No. 6) (A) on Mt. Kita (35̊40′N, 138̊14′E), one of their habitats in the southern Japanese Alps and on Mt. Norikura as other habitats on northern Japanese Alps (B). In Fig. A, the sporocysts and sporozoites are clearly formed.

Fig. 4 in Parasitic development in intestines and oocyst shedding patterns for infection by Eimeria uekii and Eimeria raichoi in Japanese rock ptarmigans, Lagopus muta japonica, protected by cages in the Southern Japanese Alps

Fig. 4. Number of oocysts per gram (OPG) as seasonal detection rate for E. raichoi of hens (solid bars) and chicks (open bars) in cage Nos. 4–6 in 2019. Double arrows show the periods during which feces of hens were examined. ND indicates that we could not collect feces and did not determine the OPG.

Fig. 2 in Parasitic development in intestines and oocyst shedding patterns for infection by Eimeria uekii and Eimeria raichoi in Japanese rock ptarmigans, Lagopus muta japonica, protected by cages in the Southern Japanese Alps

Fig. 2. Histopathological photomicrograph of a section of the intestines of dead chicks during cage protection in 2018. Figs. A and B show developmental trophozoites (arrows) and schizonts (arrows) of Eimeria spp. at the epithelial cells of the colon (Chick c) and ileum (Chick a), respectively. Some zoites (arrows) invade into submucosa (ileum of Chick b) (Fig. C). Figs. D, E, and F show the sexual zoites or cavities after releasing oocysts (arrows) of the ileum (Chick a), ceca (Chick d), and ileum (Chick c). Arrowheads in Fig. F indicate hemorrhages in the intestinal mucosa.

Fig. 1 in Parasitic development in intestines and oocyst shedding patterns for infection by Eimeria uekii and Eimeria raichoi in Japanese rock ptarmigans, Lagopus muta japonica, protected by cages in the Southern Japanese Alps

Fig. 1. Shelter used for cage protection of Japanese rock ptarmigan broods on Mt. Kita (35̊40′N, 138̊14′E), Japan in 2019.