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68 results for “capsid”
Data from: The herpes simplex virus pUL16 and pUL21 proteins prevent capsids from docking at nuclear pore complexes
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Data for: Torii et al., Influence of amino acid substitutions in capsid proteins of coxsackievirus B5 on free chlorine and thermal inactivation
<p>This folder contains the experimental data for the figures shown in the main manuscript.</p>
Enhancing gene transfer to renal tubules and podocytes by context-dependent selection of AAV capsids
<p>RawData.zip file provides AAV Barcode-Seq raw read count data used for Figure 1 and Supplementary Figure 1. Each file represents NGS read count data of each barcode (BC) PCR product indicated in the file name. VBC_AAV_capsid_Conversion_Table.csv provides information about the barcodes, CAGBC101 to CAGBC223, used for AAV capsids contained in the library. </p>
T=3 Virus Capsid Model
PICORNAVIRIDAE – Designing Model and Visualization Concepts in Virology Educational T=3 [and T=pseudo3] Virus Structure Model The project was developed during my master's studies in integrated design at the University of the Arts Bremen in cooperation with the Laboratory of Virus Research at the University Bremen. This model combines eight different approaches on the morphology of picornaviruses. Each element [capsomer] can be used as an independent structural model, 12 elements assembled resulting in a closed virus shell [capsid]. The composition of different designs within one structure enable the possibility to compare different morphological aspects side by side. This digital and interactive model can be used for classroom teaching, for digital lectures or for self-paced learning formats. [Assembly unit 02/08] Common schematic representation for visualizing "wedge-shaped" asymmetric units. These are formed by virus protein subunits, five asymmetric units [structural units] combined form a capsomere. Source: Objaverse 1.0 / Sketchfab
Data for manuscript: An all-atom view into the disordered interaction interface of the TRIM5alpha PRYSPRY domain and the HIV capsid
<p>The data is provided as a part of the manuscript "<strong>An all-atom view into the disordered interaction interface of the TRIM5alpha PRYSPRY domain and the HIV capsid</strong>". </p> <p>This repository includes an archive with folders:</p> <div> </div> <div>MDData</div> <div>-- Contains shortened versions of the MD trajectories, and initial structure files used to run simulations</div> <div> </div> <div>FigureData </div> <div>-- Contains comma separated value files for each figure</div>
Initial and final MD simulation coordinates for "Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization"
<p>Initial and final coordinates for all MD simulations performed for the manuscript: "Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization."</p> <p>File uploaded is a ZIP folder, containing sub-folders for each capsid construct (wild type and mutants). Additionally, a README file is given in the top-level folder, which contains a description of the file contents.</p>
T=3 Virus Capsid Model
PICORNAVIRIDAE – Designing Model and Visualization Concepts in Virology Educational T=3 [and T=pseudo3] Virus Structure Model The project was developed during my master's studies in integrated design at the University of the Arts Bremen in cooperation with the Laboratory of Virus Research at the University Bremen. This model combines eight different approaches on the morphology of picornaviruses. Each element [capsomer] can be used as an independent structural model, 12 elements assembled resulting in a closed virus shell [capsid]. The composition of different designs within one structure enable the possibility to compare different morphological aspects side by side. This digital and interactive model can be used for classroom teaching, for digital lectures or for self-paced learning formats. [Assembly unit 03/08] Modified structure to visualize the different sized virus proteins [subunits] by height [VP1/ VP0 > VP2 > VP3]. Source: Objaverse 1.0 / Sketchfab
Safety and Immunogenicity Study of tgAAC09, an HIV Vaccine in an Adeno-associated Virus (AAV) Capsid
ClinicalTrials.gov study NCT00888446. IPD Sharing: Not stated. Countries: 3. Publications: 1.
Effect of Lenacapavir and PF74 on HIV-1 capsid morphology: EM images
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Simulated AFM data for E45A- and E45A/R132T-mutant, and wild type, HIV-1 capsids
<p>Raw data files for simulated AFM experiments; Deshpande, et al. 2024.</p>
Additional data "The early communication stages between serine proteases and enterovirus capsids in the race for viral disintegration" Corre et al.2023
<p>The deposited files contain the SI videos.</p>
Specific binding sites on Rhesus rotavirus capsid protein dictates the method of endocytosis inducing the murine model of biliary atresia
GEO Series GSE267721. Mus musculus. 6 samples. Type: Expression profiling by array.
The hepatitis E virus capsid protein ORF2 counteracts cell-intrinsic antiviral responses to enable persistence in hepatocytes
GEO Series GSE288400. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Selective depletion of HBV-infected hepatocytes by class A capsid assembly modulators require high levels of intrahepatic HBV core protein
GEO Series GSE260966. Homo sapiens; Mus musculus. 76 samples. Type: Expression profiling by high throughput sequencing.
AAV capsid prioritization in machine-perfused normal and steatotic human livers
GEO Series GSE228000. Homo sapiens. 34 samples. Type: Expression profiling by high throughput sequencing.
Cyclophilin A Stabilizes the Capsid Protein p72 to Facilitate African Swine Fever Virus Replication
GEO Series GSE300823. Sus scrofa. 12 samples. Type: Expression profiling by high throughput sequencing.
Comprehensive AAV capsid fitness landscape reveals a viral gene and enables machine-guided design
GEO Series GSE139657. Adeno-associated virus. 169 samples. Type: Other.
The retrotransposon-derived capsid genes PNMA1 and PNMA4 maintain reproductive capacity
GEO Series GSE287603. Mus musculus. 6 samples. Type: Other.
A single amino acid substitution in the capsid protein of Zika virus contributes to the African lineage-specific virulence phenotypes
GEO Series GSE226495. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Cell-mediated Immune Response Signature to AAV Capsid in Cynomolgus Monkeys
GEO Series GSE256418. Macaca fascicularis. 102 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.