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75 results for “cultural production”
Data from: Fermentation of the sugar kelp (Saccharina latissima) – exploring the potential of the kelp’s native microbiota as starter culture and the microbiological food safety of fermented products
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Pseudocobalamin production and use in marine Synechococcus cultures and communities
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Data and analysis process for Microbiome processing of organic nitrogen input supports growth and cyanotoxin production of Microcystis aeruginosa cultures
<p>Data and analysis process for manuscript titled "Microbiome processing of organic nitrogen input supports the growth and cyanotoxin production of Microcystis aeruginosa cultures"</p>
Nitrous oxide is the main product during nitrate reduction by a novel lithoautotrophic iron(II)-oxidizing culture from an organic-rich paddy soil
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Fig. 2 in Callus cultures of Harpagophytum procumbens (Burch.) DC. ex Meisn.; production of secondary metabolites and antioxidant activity
Fig. 2. Iridoid (A, B) and phenylethanoid (C,D) glycoside contents estimated by HPLC in cotyledon-derived callus lines of H.procumbens in long-term cultures. The calli were cultured on SH medium with 0.5 or 2 mg L −1 picloram (CP0.5 and CP2 callus lines,respectively) or NAA (0.2 mg L −1) and BAP (1 mg L −1) (CNB callus line).* trace (content <0.01 mg g −1 DW).Results are means ± standard error (SE) from three independent experiments; for each metabolite, values with different letters are significantly different according to the Kruskal–Wallis test (p ≤ 0.05).
Fig. 1. H.procumbens cotyledon-derived callus tissues grown for 4 in Callus cultures of Harpagophytum procumbens (Burch.) DC. ex Meisn.; production of secondary metabolites and antioxidant activity
Fig. 1. H.procumbens cotyledon-derived callus tissues grown for 4 weeks in Erlenmeyer flasks on agar SH medium with 0.5 mg L−1 picloram (CP0.5 callus line) (A), 2 mg L−1 picloram (CP2 callus line) (B), 0.2 mg L −1 NAA and 1 mg L −1 BAP (CNB callus line) (C). Bar 1 cm.
Code and Data to reproduce figures in -> Relationship of bacterial phylotype with specialized metabolite production in the culturable microbiome of two freshwater sponges
<p>To reproduce the figures/analyses from this work, download the entire Zenodo code/data release (warning- this is a few GB large)</p> <p>Due to a requirement of the mass spectrometry conversion software, data was first converted on a Windows machine to an IDBac database using the script `R/convert_from_bruker.R`. ProteoWizard must be installed before running this script.<br> <br> The resulting SQLite database is available within the Zenodo code/data release</p> <p>To reproduce the figures/analyses you will need to download the Zenodo code/data release and have Docker installed</p> <p>To build the Docker image from scratch open a terminal at `sponge_analysis` and run the following command (warning: this is not fast):<br> </p> <pre><code class="language-bash">docker build -f dockerfile --tag chasemc2/sponge_manuscript .</code></pre> <p>The image has also been archived within the Zenodo code/data release as "docker_image.tar.gz"</p> <p>To build the notebooks/create the figures open a terminal at the top directory of the downloaded Zenodo code/data release and run the following three commands :</p> <p><br> </p> <pre><code class="language-bash"> docker run --user `id -u` --rm -ti -v${PWD}:/top -w/top/analyses chasemc2/sponge_manuscript Rscript -e 'rmarkdown::render("analysis.Rmd", params = list(conditions = "all") , output_file = "all_isolates.html")' docker run --user `id -u` --rm -ti -v${PWD}:/top -w/top/analyses chasemc2/sponge_manuscript Rscript -e 'rmarkdown::render("analysis.Rmd", params = list(conditions = "matched"), output_file = "matched_isolates.html")' docker run --user `id -u` --rm -ti -v${PWD}:/top -w/top/analyses chasemc2/sponge_manuscript Rscript -e 'rmarkdown::render("16s_analysis.Rmd")'</code></pre> <p> </p>
Supplementary material 1 from: Enchev P, Zarev Y, Ionkova I (2023) Biotechnological approaches for sustainable production of astragaloside I, II and IV from endemic species of Astracantha aitosensis (Ivan.) and Astragalus membranaceus (fisch.) by in vitro cultures. Pharmacia 70(4): 1449-1453. https://doi.org/10.3897/pharmacia.70.e114989
LC/MS spectra of astragalosides I, II and IV within the different fractions
Supplementary material 1 from: Popova P, Zarev Y, Shkondrov A, Krasteva I, Ionkova I (2022) In vitro production of flavonoids in cultures of Gypsophila glomerata. Pharmacia 69(1): 107-111. https://doi.org/10.3897/pharmacia.69.e77769
Table S1. Growth index of in vitro cultures of Gypsophila glomerata
Figure 1 from: Costa da Silva R, Sufi S, Aragon Camarasa S (2019) Collaborations Workshop 2018 (CW18) Report – Culture Change, Productivity and Sustainability. Research Ideas and Outcomes 5: e30250. https://doi.org/10.3897/rio.5.e30250
Figure 1 "Such collaboration helps the work spread" slide from John Hammerley's presentation during Collaborations Workshop 2018.
Figure 4 from: Costa da Silva R, Sufi S, Aragon Camarasa S (2019) Collaborations Workshop 2018 (CW18) Report – Culture Change, Productivity and Sustainability. Research Ideas and Outcomes 5: e30250. https://doi.org/10.3897/rio.5.e30250
Figure 4 gov.uk report pipeline slide from Matthew Upson's presentation during Collaborations Workshop 2018.
Figure 3 from: Costa da Silva R, Sufi S, Aragon Camarasa S (2019) Collaborations Workshop 2018 (CW18) Report – Culture Change, Productivity and Sustainability. Research Ideas and Outcomes 5: e30250. https://doi.org/10.3897/rio.5.e30250
Figure 3 Data presentation in spreadsheets slide from Naomi Penfold's presentation during Collaborations Workshop 2018.
Figure 2 from: Costa da Silva R, Sufi S, Aragon Camarasa S (2019) Collaborations Workshop 2018 (CW18) Report – Culture Change, Productivity and Sustainability. Research Ideas and Outcomes 5: e30250. https://doi.org/10.3897/rio.5.e30250
Figure 2 WSSSPE5.1 speed blog mapped slide from Daniel S. Katz's presentation during Collaborations Workshop 2018.
Fully defined human PSC-derived microglia and tri-culture system reveals cell type specific potentiation of complement C3 production in a model of Alzheimer’s disease [smarter-seq]
GEO Series GSE139549. Homo sapiens. 23 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic effects of alginate hydrogel applied to the production of bovine embryos: Different uses during in vitro culture
GEO Series GSE249413. Bos taurus. 9 samples. Type: Expression profiling by high throughput sequencing.
Fully defined human PSC-derived microglia and tri-culture system reveals cell type specific potentiation of complement C3 production in a model of Alzheimer’s disease [scRNA-seq]
GEO Series GSE139550. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Harnessing Apple Cell Suspension Cultures in Bioreactors for Triterpene Production: Transcriptomic Insights into Biomass and Triterpene Biosynthesis
GEO Series GSE281877. Malus domestica. 12 samples. Type: Expression profiling by high throughput sequencing.
Meta-transcriptomic Analyses Reveal Improved Gamma-amino butyric acid Production Machinery in Levilactobacillus brevis NPS-QW 145 Co-cultured with Streptococcus thermophilus ASCC1275 during Milk Ferme
GEO Series GSE157976. Levilactobacillus brevis; Streptococcus thermophilus ASCC 1275. 6 samples. Type: Expression profiling by high throughput sequencing.
Mapping of matrsisome production by alveolar epithelial cells cultured in decellularized human lung scaffolds
GEO Series GSE191279. Homo sapiens. 71 samples. Type: Expression profiling by high throughput sequencing.
Effect of the marine natural product-derived compound ZJ-101 on MDA-MB-231 gene expression in 2D culture format
GEO Series GSE227790. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.